ID HQ343291; SV 1; linear; genomic RNA; STD; VRL; 2480 BP. XX AC HQ343291; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate JD-JN6 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2480 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2480 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; a616af6cc8af094e50ec04c89806572d. XX FH Key Location/Qualifiers FH FT source 1..2480 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="JD-JN6" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:O10387" FT /protein_id="ADY76590.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL" FT gene complement(1420..2388) FT /gene="N" FT CDS complement(1420..2388) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:G4WH23" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:G4WH23" FT /protein_id="ADY76591.1" FT /translation="MGTNKPATLADLQKAISDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2480 BP; 762 A; 528 C; 430 G; 760 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggttccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtcaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc cgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cactagaacc ctcaccaggc agctctccag ctgtgctgta gaaataagaa gaataaagaa 720 aaaagaaaat aaaacaaata atcaaaaaaa acacaaaaaa atcttaaaaa tgaaaaacac 780 aaaaaaacca aaaaactaaa aaaaactaaa aaaacatcat gacctaagaa actgcacacc 840 actggttgtc tagtgggctc tagttggtag agaaagctat gcttttgcct aaagccatga 900 ttggccaatc cttaaaatgt gctaagcaca ttatccgaag atgtctcgga tgttttttta 960 cctaacctaa tttttttgta tttttatata attttttgat ttttttgtat tttatataca 1020 tatttttgtt ttttgatttt tttgtttttt aatatttttc cttctaagta ctacattaat 1080 atatttgatt attcatatac ttaaaacata tagtatgtat tataaaaata gagcaatata 1140 ataaagctag tataactaca ttacaaacat atatctaaat atttagatag acttatcaaa 1200 ctaaagactc tactagagag tgagtaataa taatggcaat acatcacaca caaagcccaa 1260 aaccacacag acaaaataac ctatggaata taattaaaaa ctaaaatata cacatataaa 1320 tatacatatt aacttacacc taaagaaaca acacactgtt tggagacatg catcttccat 1380 ggagatatga gatcccccac aactactgac ttgttcagtc tagtcatctg caccttctgc 1440 ctcgtcctcg aagaactcct tcaccaaccc gctaacttca gatgctgtct ttgaagtgtt 1500 ctcagcaagg atcttcatca gtttgctctg ttgagccaag tacagccttg tctgattccc 1560 ataagtgctg atcgtattga cagacatacc agccagcgca tcgaagattg tggtcttcac 1620 tttcccattg gtgatgaatt catctaagac cttctttctg ccatcttcct tcttcttgtc 1680 agccaggttc tttgacttgc atgtgatgac caggagacca gttgtgtact tcatcatgtc 1740 tatgtctttt gtcagaccac gctccttctt cttaccctct ggcatggtct ttttggttat 1800 ttggaaggag tgaatgatgt gcacaacaaa caaaatgtga cttagggagt gagttgtgca 1860 gtaaggagct gtttcactct ccagtttgat atattgtgga acatagtccc acagtaagtt 1920 atcacatcct gttagtccta ggtcagagga gtccacagcc atcttaacac cagaaatttg 1980 tctcacaact tcatgtgaga catttgggaa tagctgagcc agccttccaa gtgtgatggc 2040 attggcattt gtccccacag aggacactat cccatacctc gacaccaagg tcgaagcctc 2100 tgtgcttcca gccgccactt tcactttctt agtgacatct ctcacaaagc cagtgcctct 2160 cacatatctc atggtgatgc acatagtcat atccttggcc agtgtgtcac cacctttgtc 2220 cttcaatatg ccaatcagag ttgcagcatc atagcctgca tactctatct gaccagcaaa 2280 ggtcacaaca tcagctttat gagcagtcag gtaagacaac gcatctttgg agatgtcact 2340 gattgccttc tgcaaatcag ctagagtggc tggcttgttg gtgcccattg tagcaagagg 2400 tactggagga atggttgcgg cttagatgaa atttggaatg taaaagcaaa atcgaaaatt 2460 ttattaccca gactttgtgt 2480 //