Dbfetch
ID HQ343290; SV 1; linear; genomic RNA; STD; VRL; 2477 BP. XX AC HQ343290; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate JD-JN4 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2477 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2477 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 11c3ba073ec5b2f04a684ba435522b94. XX FH Key Location/Qualifiers FH FT source 1..2477 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="JD-JN4" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:O10387" FT /protein_id="ADY76588.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL" FT gene complement(1417..2385) FT /gene="N" FT CDS complement(1417..2385) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:G4WH21" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:G4WH21" FT /protein_id="ADY76589.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLTDKKKEDGRRKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2477 BP; 758 A; 525 C; 430 G; 764 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtag gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtcaagg 480 gatttccccc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cactagaacc ctcaccaggc agctctccag ctgtgctgta gaaataaaaa gaaaaaagga 720 aaaagaaaat aagacaaata atcaaaaaaa cacaaaaaaa tcttaaaaat gaaaaacaag 780 aaaactaaaa aactaaaaaa actaaaaaac atcatgacct aagaaactgc acaccactgg 840 ttgtctagtg ggctctagtt ggtagagaaa gctatgcttt tgcctaaagc catgattggc 900 caatccttaa aatgtgctaa gcacattatc cgaagatgtc tcggatgttt ttttacctaa 960 cctaattttt ttgtattttt atataatttt tttgattttt ttgcatttta tatacatatt 1020 tttgtttttt gatttttttg tttttttaat attttttctt ataattacta cattattata 1080 tttgattatt catatactta aaatatatag tatgtattat aaaaatagag caatataata 1140 aatctagtat aactacatta cgaacatata tctaaatatt tagatagact tatcaaacta 1200 aagactctac taaagagtga gtaataataa tggcaataca tcacacacaa agcccaaaac 1260 cacacagaca aaataactta tggaatataa ttaaaaacta aaatatacac atataaatat 1320 acatattaac ttacacctaa agaaacaaca cactgtttga agacatgcat cttccaggga 1380 gatatgagat cccccacaac tactgacttg ttcagtctag tcatctgcac cttctgcctc 1440 gtcctcgaag aactccttca ccaacccgct gacttcagat gctgtctttg aagtgttctc 1500 agcaaggatc ttcatcagtt tgctctgttg agccaagtac agccttgtct gattcccata 1560 agtgctgatc gtattgacag acataccagc cagcgcatcg aagattgtgg tcttcacttt 1620 cccattggtg atgaattcat ctaagacctt ccttctgcca tcttccttct tcttgtcagt 1680 caggttcttt gacttgcatg tgatgaccag gagaccagtt gtgtacttca tcatgtctat 1740 gtcttttgta agaccacgct ccttcttctt accctctggc atggtctttt tggttatttg 1800 gaaggagtga attatgtgca caacaaacaa aatgtgactt agggagtgag ttgtgcagta 1860 aggagctgtt tcactctcca gtttgatata ttgtggaaca tagtcccaca gtaagttgtc 1920 acatcctgtc agtcccaggt cagaggagtc cacagccatc ttaacaccag aaatttgtct 1980 cacaacttcg tgtgagacat ttgggaatag ctgagccagc cttccaagtg tgatagcatt 2040 ggcatttgtc cccaccgagg acactatccc atacctcgac accaaggtcg aagcctctgt 2100 gcttccagcc gccactttca ctttcttagt gacatctctc acaaagccag tgcctctcac 2160 atatctcatg gtgatgcaca tagtcatatc cttggccagt gtgtcaccac ctttgtcctt 2220 caatatgcca atcagagttg cagcatcata gccagcatac tctatctgac cagcaaaggt 2280 cacaacatca gctttatgag cagtcaggta agacaacgca tctttggaga tgtcattgat 2340 tgccttctgc aaatcagcta gagtggctgg cttgttggtg cccattgtag caagaggtac 2400 tggaggaatg gttgcggctt agatgaaatt tggaatgtaa aagcaaaatc gaaaatttta 2460 ttacccagac tttgtgt 2477 //