ID HQ343289; SV 1; linear; genomic RNA; STD; VRL; 2481 BP. XX AC HQ343289; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate GS-JB16 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2481 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2481 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; 66b7c79d87bf04ed45343b985f647869. XX FH Key Location/Qualifiers FH FT source 1..2481 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="GS-JB16" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:O10387" FT /protein_id="ADY76586.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL" FT gene complement(1421..2389) FT /gene="N" FT CDS complement(1421..2389) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:G4WH19" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:G4WH19" FT /protein_id="ADY76587.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLENETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2481 BP; 764 A; 526 C; 423 G; 768 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ctccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcttatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtcaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaaga cataagtatg 600 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cactagaacc ctcaccaggc agctctccag ctgtgctgta gaaacaaaaa aagaaaaaaa 720 taaaaaagaa aataaaacaa acaatcaaaa aaacacaaaa aaatcttaaa aatgaaaaac 780 acaaaaaaac taaaaaacta aaaaactaag aaacatcatg acctaaaaat ctgcacacca 840 ctggttatct agtgggctct agttggtaga gaaagctatg cttttgccta aagccatgat 900 aggccaatcc ttaaaatgtg ctaagcacat tatccggaga tgtctcggat gttttttttc 960 ctaacctaat tttttttgta tttttatata attttttgat tttttttgta ttttatatac 1020 atatttttga ttttttgatt tttttgtttt ttaatatgtt ttcttctaat tactacatta 1080 atatatttga ttattcatat acttgaaata tatagtatgt attataaaaa tagaacaata 1140 taataaagct agtataacta tattacaaac atatatctaa atatttagat agacttatca 1200 aactaaagac tctactagag agtgaacaat aatattggta atacatcaca cacaaagccc 1260 aaaaccacac agacaaaata acttatggaa tataattaaa aactaaaata tacatattaa 1320 atatacataa taacttacac ctaaagtaac gacacactgt ttgaagacat gcgtcttcca 1380 gggagatata agatccccca caactactga cttgttcagt ctagtcatct gctccttctg 1440 cctcatcctc aaagaactcc ttcaccaacc cgctgacttc agatgctgtc tttgaagtgt 1500 tctcagcaag gatcttcatc agcttgctct gttgagccaa gtacagcctt gtctggttcc 1560 cataagtgct gatcgtattg acagacatac cagccagcgc atcgaagatt gtagtcttca 1620 ctttcccatt ggtgatgaat tcatctaaga ccttctttct accatcttcc ttcttcttgt 1680 cggcaaggtt ctttgacttg catgtgatga ccaggagacc tgttgtgtac ttcatcatgt 1740 ctatgtcttt tgtcagacca cgctccttct tcttaccctc tggcatggtc tttttggtga 1800 tttggaagga gtgaatgatg tgcacaacaa acaaaatgtg acttagggag tgagttgtgc 1860 agtaaggagc tgtttcattc tccagcttga tatactgtgg aacatagtcc cacagtaagt 1920 tgtcacatcc tgttagtccc aggtcagaag agtctacagc catcttaaca ccagaaattt 1980 gtctcacaac ctcatgcgag acatttggga atagctgagc caaccttcca agtgtgatag 2040 cattggcatt tgttcccacc gaggatacta tcccatacct cgacaccaag gtcgaagcct 2100 ctgtgcttcc agccgccact ttcactttct tagtgacatc tctcacaaag ccagtgcctc 2160 tcacatatct catggtgatg cacatagtca tatccttggc cagtgtgtca ccacctttgt 2220 ccttcaatat gccaatcaga gttgcagcat catatcctgc atactctatc tgaccagcaa 2280 aggtcacaac atcagcttta tgagcagtca ggtaagacaa cgcatcttta gagatgtcat 2340 tgattgcctt ctgcaaatca gctagagtgg ctggcttgtt ggtgcccatt gtagcaagag 2400 gtactggagg aatggttgcg gcttagatga aatttggaat gtaaaagcaa aatcgaaaat 2460 tttattaccc agactttgtg t 2481 //