ID HQ343287; SV 1; linear; genomic RNA; STD; VRL; 2473 BP. XX AC HQ343287; XX DT 02-OCT-2011 (Rel. 110, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate BA-JB6 segment RNA3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2473 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT "Development of a RT-PCR restriction analysis-based method for detecting RT natural genetic reassortment of Rice stripe virus RNA segments"; RL Unpublished. XX RN [2] RP 1-2473 RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.; RT ; RL Submitted (04-OCT-2010) to the INSDC. RL Department of Agricultural Biotechnology and Plant Genomics and Breeding RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong, RL Gwanak-gu, Seoul 151-921, South Korea XX DR MD5; a5b563d29543766c3e65a85ad60d6d33. XX FH Key Location/Qualifiers FH FT source 1..2473 FT /organism="Tenuivirus oryzaclavatae" FT /segment="RNA3" FT /host="Oryza sativa japonica" FT /isolate="BA-JB6" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052763" FT gene 66..701 FT /gene="NS3" FT CDS 66..701 FT /codon_start=1 FT /gene="NS3" FT /product="NS3" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:G4WH14" FT /protein_id="ADY76582.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAML" FT gene complement(1413..2381) FT /gene="N" FT CDS complement(1413..2381) FT /codon_start=1 FT /gene="N" FT /product="N" FT /db_xref="GOA:G4WH15" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:G4WH15" FT /protein_id="ADY76583.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKREDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2473 BP; 754 A; 526 C; 430 G; 763 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagttaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtcaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc tgataaaccg cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cactagaacc ctcaccaggt agctctccag ctatgctgta gaaataaaaa ggaaaaagaa 720 aaaagaaaat aaaacaaata atcaaaaaaa caaaaaaatc ttaaaaatga aaaccacgaa 780 agaaccaaaa aactaaagaa actaaaaaac atcatgacct aaaaaactgc acaccactag 840 ttgtctagtg ggctctagtt ggtagagaaa gctatgcttt tgcctaaagc catgattggc 900 caatccttaa aatgtgctaa gcacattatc cgaagatgtc tcggatgttt tttacctaac 960 ctaatttttt tgtattttta tataattttt tgattttttt gtattttata tacatatttt 1020 tgttttttga tttttttgtt tttaatattt tttcttctag ttactacact aatatatttg 1080 attattcata tacttaaaat atttagtatg tattataaaa atagagcaat atattaaagc 1140 tagtataact acattacaaa catatatcta aatatttaga tagacttatc aaactaaaga 1200 ctctactaga gagtgagtaa taataatggc aatacatcac acacaaagcc caaaaccaca 1260 cagacaaaat aacttatgga atataattta aaactaaaat atacacatat aaatatacat 1320 attaacttac acctaaagaa acaacacact gtttgaagac atgcatcttc cagggagata 1380 tgagatcccc cacaactact gacttgctca gtctagtcat ctgcaccttc tgcctcgtcc 1440 tcgaagaact ccttcaccaa cccgctgact tcagatgctg tctttgaagt gttctcagca 1500 aggatcttca tcagtttgct ctgttgagcc aagtacagcc ttgtctgatt cccataagtg 1560 ctgatcgtat tgacagacat accagccagc gcatcgaaga ttgtggtctt cactttccca 1620 ttggtgatga attcatctaa gaccttcttt ctgccatctt ccctcttctt gtcagccagg 1680 ttctttgact tgcatgtgat gaccaggaga ccagttgtgt acttcatcat gtctatgtct 1740 tttgtcagac cacgctcctt cttcttaccc tctggcatgg tctttttggt tatttggaag 1800 gagtgaatga tgtgcacaac aaacaaaatg tgacttaggg aatgagttgt gcagtaagga 1860 gctgtttcac tctccagttt gatatattgt ggaacatagt cccacagtaa gttgtcacat 1920 cctgttagtc ccaggtcaga ggagtccaca gccatcttaa caccagaaat ttgtctcaca 1980 acttcatgtg agacatttgg gaatagctga gccagccttc caagtgtgat agcattggca 2040 tttgtcccca ccgaggacac tatcccatac ctcgacacca aggtcgaagc ctctgtgctt 2100 ccagctgcca ctttcacttt cttagtgaca tctctcacaa agccagtgcc tctcacatat 2160 ctcatggtga tgcacatagt catatccttg gccagtgtgt caccaccttt gtccttcaat 2220 atgccaatca gagttgcagc atcatagcct gcatactcta tctgaccagc aaaggtcaca 2280 acatcagctt tatgagcagt aaggtaagac aacgcatctt tggagatgtc attgattgcc 2340 ttctgcaaat cagctagagt ggctggcttg ttggtgccca ttgtagcaag aggtactgga 2400 ggaatggttg cggcttagat gaaatttgga atgtaaaagc aaaatcgaaa attttattac 2460 ccagactttg tgt 2473 //