ID   HQ343234; SV 2; linear; genomic DNA; STD; VRL; 1396 BP.
XX
AC   HQ343234;
XX
DT   07-MAR-2011 (Rel. 108, Created)
DT   25-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cotton leaf curl virus associated DNA 1 isolate Lucknow replicase (rep)
DE   gene, complete cds.
XX
KW   .
XX
OS   Cotton leaf curl Lucknow alphasatellite
OC   Viruses; Alphasatellitidae; Geminialphasatellitinae; Colecusatellite.
XX
RN   [1]
RP   1-1396
RA   Kumar A., Snehi S.K., Raj S.K.;
RT   "Symptomless alphasatellite rep gene associated with cotton leaf curl
RT   disease";
RL   Unpublished.
XX
RN   [2]
RP   1-1396
RA   Kumar A., Snehi S.K., Raj S.K.;
RT   ;
RL   Submitted (06-OCT-2010) to the INSDC.
RL   Plant Molecular Virology, National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U. P. 226001, India
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1396
RA   Kumar A., Snehi S.K., Raj S.K.;
RT   ;
RL   Submitted (24-MAR-2011) to the INSDC.
RL   Plant Molecular Virology, National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U. P. 226001, India
XX
DR   MD5; be138d2793198b4a79942bfeda963c08.
XX
CC   On Mar 24, 2011 this sequence version replaced gi:325071286.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1396
FT                   /organism="Cotton leaf curl Lucknow alphasatellite"
FT                   /host="cotton"
FT                   /isolate="Lucknow"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /isolation_source="leaf"
FT                   /collection_date="Jul-2010"
FT                   /db_xref="taxon:2169841"
FT   gene            78..1025
FT                   /gene="rep"
FT   CDS             78..1025
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replicase"
FT                   /db_xref="GOA:F1CKK1"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:F1CKK1"
FT                   /protein_id="ADY75748.1"
FT                   /translation="MPALKAQWWCFTVFFLSATAPDLVPLFENTHVSYACWQEEESPTT
FT                   RRRHLQGYLQLKGQRTLNQVKALFGDLNPHLEKQRACKTDEARDYCMKEETRVSGPYEF
FT                   GDYCPGGSHKRRQRELVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAHEIQIPNLKSW
FT                   QSRLKTLLDRDPDDRTIFWVYGPTGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIG
FT                   CLGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDF
FT                   EKISFDRVHVIPCIPCGACLKHHVGEIKCDEYLE"
XX
SQ   Sequence 1396 BP; 393 A; 268 C; 333 G; 402 T; 0 other;
     accccgcctc gagaccccga gctagagacc tgtccgtaca attctctctc ttctctcatt        60
     cttctctctt agtaaatatg cctgccctca aagctcaatg gtggtgtttc acggtcttct       120
     tcttatctgc tactgcacct gacctggtgc ctttgttcga aaacactcac gtgagttacg       180
     cctgctggca agaggaagag tctcccacga ctcgacgacg ccatctgcaa ggctacctgc       240
     aattgaaggg tcagaggacc ctaaaccagg tgaaggctct ctttggggac ttgaatcccc       300
     atcttgagaa gcaacgagct tgtaagactg acgaagctcg agactattgt atgaaagagg       360
     aaactagggt ttccggtcct tacgaatttg gggattattg ccctggtggt tcgcacaaac       420
     gccggcaacg ggaacttgta attagaagtc cggttagaat ggccgaggaa aatccgtccg       480
     tattccgacg agtcaaggca aagattgcgg aggaagaatt ccagaagacc gcccatgaga       540
     ttcaaattcc aaatttgaaa tcttggcagt cgcgcctgaa gacgctcctc gacagggacc       600
     cagatgaccg cactatcttc tgggtttatg gtcccactgg tggggaagga aaatccacct       660
     ttgccagaga cttgtacaga agtgggtcct ggttctatac acgtggagga tctgcagaca       720
     acgtcagcta tcagtatata ggatgtttag ggaataatat tgtatttgat atccctcgtg       780
     ataagaagga ttatctacag tatagtttaa tagagatgtt taaggataga ttaatagtta       840
     gtaataagta tgagcctctt atggcccctc taattaattg tattcatgta gtagttatgt       900
     ctaattttct ccctgatttt gagaagatta gttttgatag ggttcatgta atcccttgta       960
     ttccttgtgg tgcttgtctt aagcatcatg ttggtgaaat aaaatgtgat gagtatttgg      1020
     agtaattctg ttaatgtttg ccgctaataa ttaacataat aatatgaatt tgagaagaac      1080
     caggccgcgc agcggctaca cttagaaaaa ttttgcttct tgaagacaag aaggaaggat      1140
     atgaaagaag gaactaactg tttgatgctg taaatgtggg tcccacaatc atagattagg      1200
     agaaaaaaga attatgaaaa ggacattcat cttgggccta tgaatgggcc gtaactggtt      1260
     tgatgaataa tggtctttga ttgttcaata tagagttgag gtcattgtgt aaatattaaa      1320
     agtcttcaag ggtatgcgtg caattatgtg aggtctctct gctataaata acacgtcacg      1380
     aggcgggtgt agtatt                                                      1396
//