ID HQ342888; SV 1; linear; genomic RNA; STD; VRL; 5837 BP. XX AC HQ342888; XX DT 05-APR-2011 (Rel. 108, Created) DT 05-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate CHN-HN1, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5837 RA Zhang Y.-L., Xiong G.-R., Wang J.-H., Yang W.-J., Zhang S.-Z., Liu Z.-X.; RT "Molecular identification and complete genomic sequence of a sugarcane RT yellow leaf virus isolate from Hainan Island, China"; RL Unpublished. XX RN [2] RP 1-5837 RA Zhang Y.-L., Xiong G.-R., Wang J.-H., Yang W.-J., Zhang S.-Z., Liu Z.-X.; RT ; RL Submitted (06-OCT-2010) to the INSDC. RL Institute of Tropical Bioscience and Biotechnology, Chinese Academy of RL Tropical Agricultural Science, 4 Xueyuan Road, Haikou, Hainan 571101, P.R. RL China XX DR MD5; 269a7d0f4e1c2175cbb7907dddc40611. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5837 FT /organism="Sugarcane yellow leaf virus" FT /host="sugarcane cv. ROC22" FT /isolate="CHN-HN1" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Aug-2010" FT /db_xref="taxon:94290" FT 5'UTR 1..23 FT CDS 24..794 FT /codon_start=1 FT /product="RNA silencing suppressor" FT /note="ORF0 protein" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:F2X6V2" FT /protein_id="AEA49032.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQDYYGPNTPVYNWLEHVRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV FT LLWLARNKLYYRVKGCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDLLERG FT YDTFRSVLGVHLLEHERFVSRILEQPVMEPDQAVRLCLHYHNTLDHDDDDSGLETDFDN FT LSLGCPYINGLPPNEKIIFIHSNLVGHSTYSHDI" FT CDS 199..2151 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:F2X6V3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:F2X6V3" FT /protein_id="AEA49033.1" FT /translation="MAPTLPFTTGWSTFALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEFTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVIAPILMIYRTVTYIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVLDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKSPPPDKPVENATAKEQTPASTVEKAMVADQPTPDQGNEPSGADHLKTP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP FT VSGGPPSAPKPKRQV" FT CDS <1692..3410 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift" FT /db_xref="GOA:F2X6V4" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F2X6V4" FT /protein_id="AEA49034.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVINRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWMLEDDMEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 3605..5635 FT /codon_start=1 FT /transl_except=(pos:4193..4195,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5" FT /db_xref="GOA:F2X6V5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F2X6V5" FT /protein_id="AEA49035.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYIPEAPE FT QPTNEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDIPVVEEVLRE FT SPIYAPPPPPSLVPTHADTLRQADKVRRALMANASRSASPPPTNTEVPVLGATDTASLS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLQALPE FT ATREQRREYERLKNSQGKTVAKAHAKEHGYKPPKSSSSLFG" FT CDS 3605..4195 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AEA49036.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3636..4088 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:F2X6V7" FT /protein_id="AEA49037.1" FT /translation="MSEDVLTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" FT 3'UTR 5636..5837 XX SQ Sequence 5837 BP; 1553 A; 1527 C; 1411 G; 1346 T; 0 other; gcctctgact tgtaaactgc tctatgcttt ttaacgaatt ctctgttgag ggaattaaat 60 tcagagcaca cgagagtact tcacccgtct ttcgtgggga ggtttccagg tgtttgacct 120 actatagagt cttcgcctgc aagtgggttg agttgaccta ccaagatcca ctcacacgcc 180 atctagtaca agattactat ggccccaaca ctcccgttta caactggctg gagcacgttc 240 gccttattgt tgtcactatg gtgcctattc tgctcctgcc agacacaacc attggacggc 300 acatccatat taagagacag tacctccagt ctgtcctttt atggcttgcc cgcaacaaac 360 tctactatag agttaaggga tgccgttcca agcggtttgt actcgagcaa gatcacatcg 420 gccccgaact tttccgaact cagctactcc agtatgctgg gttggatgtt tttcaagatg 480 tggctcgatt gcaagacctt ctcgagagag gctacgacac tttccgatcg gttcttggag 540 ttcaccttct cgaacacgaa aggtttgtta gtcgaattct tgaacaacct gttatggaac 600 ctgatcaagc tgtacgttta tgccttcact atcataacac gcttgatcat gacgatgacg 660 attctggcct ggaaaccgat tttgataatc tgtctcttgg ttgtccttac atcaatggtc 720 taccacctaa tgagaaaatt attttcattc attcaaattt ggtgggtcat agcacctatt 780 ctcatgatat ataggaccgt cacgtacatc cacagaaggt tgttcgcttc acgaggggac 840 gagaaaatgg tccaaggttt caaaagcttt gccgtcccca tgtcaccacc aggacactca 900 gtgcttgaga tagtacaccc cgatgattct cacatgggat atgcatcctg tgttcgattg 960 aaaaacgggg aagaggctct catgacatcc gttcactgca taagcgattc tttcaaggtt 1020 cgctcgttca ggaatggtat caagatccct ctaacggaat tccaagtgct gttgcccgcc 1080 aatgcgatgg acattgttct tcttcgaggc ccacctgagt ggaagtccat ccttggagcc 1140 aaagcagccc atttcactcc agtcaaccag ctcaacaaag gagctgtgtc tttcttcatt 1200 tttgacaagg agtggatgat gcacaacgca aaagtcacag gaactgatgg tttttatgcc 1260 acagttctta gtaacactga gaagggctac agtggcgccc cctactggaa tgggaaatct 1320 atagtagggg tgcataaagg gcacgtgtac ggagacgatt ccaagaatta caatcttatg 1380 tcgccgattc cccctgtcaa ggggttaacg gcgcctaatt ttgtgtatga gtctccgtct 1440 ctgcaaggag atgtctttag cgacgccgac gttttagaca ttgctgatta cgccgaggag 1500 gtgtatgaga aaacccttgc agagcctaaa gtgtggaaac ctgccagcgg taaatactgg 1560 tgggaaatgg ctgaagaaga ggatgatttt gtcgttgagg caaagtcacc tccccctgat 1620 aaacctgttg agaacgctac agcaaaagag cagactccag cttcgactgt cgagaaagct 1680 atggttgctg atcagccgac tccagaccag ggaaacgagc caagtggcgc cgaccactta 1740 aaaacaccgg aatccacccc gctcaagcaa gacgaatcta caaaagagtt gctcaacaac 1800 atcgtctcgc agttgattca aaagatcgac ctgagctcca ttgcaacgag ggtggaggag 1860 aaactgctgc gtcaggccca gaacaaacag cagcagaacg gagggaagaa gtcgcccaga 1920 aaacgcaaga cctcgaacac ttcttccaag ccgcatacaa atgggaagag tccaccagtg 1980 acatcccagg gttcaggaaa tgcggcaaac tccccgcgct ataccatccc ccaaaaccga 2040 agagcacaca atggggagag cgcatcatct cagagcaccc agaaatggcg tccaaagtcg 2100 ccggtttcgg gtggccctcc ttcggcgccc aagccgaaga gacaagtctg agactccaag 2160 cggcacgctg gcttaaacga gctgagtcag cggaaaagcc gacagaaaaa caacgcaagc 2220 tcgtcattaa tcgtgtggtc aaggcatatg aaccgtgtag aaccaatgcc ccacacacca 2280 gctcctctgg cagcctcatc tggtccgact tcttgaaaga tttcaaggag gctgtcaact 2340 cactagaact cgatgcagga ataggtctcc catacaagct tcttcacaaa gacactcatc 2400 gtcagatggt tgaagacccc aaattcctgc cgctcctgac gcgattgacc tggaaccgtt 2460 tacagaagat gtcccaggtt gacttccagg agatgactcc tgaacaacta gtgagagaag 2520 gattgtgcga tccgattcgt ttgttcgtca aaggagaacc gcacaagcag gcaaagcttg 2580 atgaagggcg ctaccgcctc atcatgtcag tctcgctggt agatcaactg gtagcccggg 2640 ttttgtttca ggcacaaaac aaaagagaga tagctttgtg gagagctatc ccttcaaagc 2700 ccggtttcgg cttatccaca gacagggaag cacgcgaatt cattgaatcc ctgtccaaga 2760 cagtagggtg ttccccagca gaagtcattc atggctggag ggacaagatc gtacccaccg 2820 actgttccgg ttttgactgg tcagtcgccg actggatgct cgaagacgac atggaagtga 2880 gaaatcttct cacaatcaac aacaacgagc taacccgccg cctcagggcg tgctggttga 2940 agtgcatcac aaactctgtg atttgtacat ccggcggtgt cttgtacgcc caaactcatc 3000 ctggagtgca aaaatctgga tcttacaaca cgagttcatc caattccagg attcgagtaa 3060 tggccgcttt tcattgcggc gcagattggg cgatagccat gggagacgac gcacttgagt 3120 ctccaaactc caacatcaac gcgtatcaaa agttggggtt caaagtcgag gttgcctcac 3180 agctagaatt ttgctcacac gtctttgagc aggaggacct cgccaggccg ttgaacgtga 3240 acaaaatgct ttatcgtttg atctttggat acaatccggc ctgtggcaac gcggaggtgt 3300 tgtgtaacta cctccaagct gtggcttctg ttctcaacga gcttcgccat gatccacagc 3360 tagttgctac cctccatgag tggctggttc ctggcgccgc cacaaaataa atacggaggg 3420 acatcccgag ccaccatata ggttgcaaga gtggaacggg aagtcctata gacaagccgc 3480 gcgattctgg attacaaact tctagcggga gttctcattg gtgttctcat cgcaatccca 3540 ctagtgatca tagcggctta cctgatattc ctcaaaatca gtgcacacat ccgagcgata 3600 gtgaatgaat acgggcgcta accgctcacg aaggaatgtc agaagacgtg ctaaccgtcg 3660 tagacagact cggccagtgg tcgtggtccg ggctccccca ggacctagac gagtacgacg 3720 acgtagagca cgtgttggag gaaacgctgt gcgaggaccg ggaggaagaa gcaaccggga 3780 tgttctcact ttcacggttg acgatctcaa agccaactca accgggatcc tcaaattcgg 3840 accgaactta tctcagtacg cagcgttcaa caatggctta ctcaaagcct accatgagta 3900 taaaatcaca agtctcacta ttcagtataa ctcatgctcc tccgacgcaa ctccaggtgc 3960 aatcgcactt gaagtggata catcctgctc ccaaacaaca acaggctcca agattactag 4020 cttccccgtc aagaggaacg ccaagaaagt cttcccggcc cccttcatca gggggaaaga 4080 tttcatgact acgtcagctg accagttttg gttgctgtac aaagggaatg gagactcgag 4140 cctagcagga caattcgtct gccgatttga atgccttttc cagaatccca aataggtagg 4200 cgacgctccc ccaacaccca ccccaacacc aaccccaccc gctccgaccc cggcaccggc 4260 tcccaagtat tttggatacc aaggagtgcc gaacaacatc gtgaaaacaa gaggaaactc 4320 tgaatatcta gatgtgggtc cgctcgaaaa tgtgaccatg tatctttgga aagacgaatc 4380 gtggagcatt gagcaactgt cagccggata tcgcgttaac aatcgagaac gtgccatacc 4440 cttcgtcctc tttccagtgg ataaaggcaa gtactccgtg tttatacaat gtgagggctt 4500 taaggcagtt aaagccaaag gaggcacgaa cgacggcaag atgagcgggt ttctttgtga 4560 caatgcaaat ctcgcgggtt ggcgagcata cgcatatagt gggtgtacaa tctctaatta 4620 tagaacatcg gactctaatg ttcctggtca tccggacatg aaagtcaatg gtggatcttt 4680 taccgaccaa ttggtcgaga gagatttttc ttgttcattt caccttgagg tgcctcaaca 4740 aggctatttt ggcctagagg ccccacccat tgaaaagagt gatcatttca attttgtggt 4800 gtcttacgct aacttcactg ataaaatcct ggaatggggt tcaatctccg tagcgataga 4860 cgaggtgaat gacggagcgt atagtagatc aaaatgggat aagactactg caatgagtgc 4920 tcgtttgccg actcaggtga gcgccccctc tgaggtttac atcccggagg cacctgagca 4980 accgactaac gaagggacgg agagtatgcc tccagccccg aacccggcac tgggaccgga 5040 caacccagca accaaagaac ccacgcccaa aatcgtggat aatccggacc cgaaggtgct 5100 caactggctc aacaaccagc gagatatacc tgtggtggaa gaagttttgc gtgaatctcc 5160 gatttatgct cctccacccc ccccgtctct agttccgact catgccgaca ctttaagaca 5220 ggcggataag gtccggagag ctctcatggc taacgcttca cgttcagcct cacctccccc 5280 cacgaacacc gaagttcctg ttcttggagc cactgacacc gcttctctta gtggatcatt 5340 acgcggtggc tccctcaggg gtaatttggg ttctcgcccc tctcttccga gggtcgctga 5400 cagccctccc cgttctgtaa gtccggctcg ttccgagacc agcactttac agggcggttc 5460 cctgagcggt ggttctttga gaggtggtaa cctccaggct ttgcctgagg ccacaagaga 5520 gcaaaggagg gaatatgaac gtctcaagaa ttcacaaggg aagacggtag caaaagccca 5580 tgctaaagaa cacggttaca agccaccgaa atcttcctcc tccttgtttg gttgagtgtc 5640 gagccactat aacgctcccc gccccgggac acgggactcc aatcatgagt ttaaactgag 5700 ctctttccac gagcctaaac tggagaactc cgcaaagttc taaaactatg cagatgggct 5760 agcgacccag ctcttccatt gattttcagg atctttggaa gcccaagcta aaggggtgga 5820 atacagggag gcactgc 5837 //