ID HQ339954; SV 1; linear; genomic RNA; STD; VRL; 6688 BP. XX AC HQ339954; XX DT 07-NOV-2010 (Rel. 106, Created) DT 22-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Piscine myocarditis virus AL V-708, complete genome. XX KW . XX OS Piscine myocarditis virus AL V-708 OC Viruses; Riboviria; Totiviridae. XX RN [1] RP 1-6688 RX DOI; 10.1128/JVI.02154-10. RX PUBMED; 21411528. RA Haugland O., Mikalsen A.B., Nilsen P., Lindmo K., Thu B.J., Eliassen T.M., RA Roos N., Rode M., Evensen O.; RT "Cardiomyopathy syndrome of atlantic salmon (Salmo salar L.) is caused by a RT double-stranded RNA virus of the Totiviridae family"; RL J. Virol. 85(11):5275-5286(2011). XX RN [2] RP 1-6688 RA Haugland O., Mikalsen A.B., Nilsen P., Lindmo K., Thu B., Eliassen T.M., RA Rode M., Evensen O.; RT ; RL Submitted (05-OCT-2010) to the INSDC. RL Department of Basic Sciences and Aquatic Medicine, Norwegian School of RL Veterinary Science, Ullevalsveien 72, Oslo, Norway 0454, Norway XX DR MD5; 5a9b1ead0366e2b03a951a98d4b1faad. DR EuropePMC; PMC3094960; 21411528. XX FH Key Location/Qualifiers FH FT source 1..6688 FT /organism="Piscine myocarditis virus AL V-708" FT /host="Salmo salar L. (Atlantic salmon)" FT /isolate="AL V-708" FT /mol_type="genomic RNA" FT /country="Norway" FT /collection_date="2007" FT /db_xref="taxon:912320" FT CDS 445..3030 FT /codon_start=1 FT /product="coat protein" FT /note="structural protein; ORF1" FT /db_xref="GOA:E3W911" FT /db_xref="UniProtKB/TrEMBL:E3W911" FT /protein_id="ADP37186.1" FT /translation="MEPNTSVIATEQQQAAMREVEAEAAARDEVVEKIAFAEGAMMVQT FT RRLPSGKSSVGGFLGELAQNIRAMNRSLHTDTNMLTEGAMVDRARAKVHKIIREGNLDS FT RVFSNTGSNTMLSLWVPAVPGPPAVPEHWDVAPSWFVCRPGKKGGIKITQSASMAALNP FT LFRGADVGPIGTAVRADVNAFSMNAVLGALRAGGFNTEHSLVSFVEPLIRILLMGVQTQ FT DRGTSPWDWVGGMSSRIVNPLVFTTSGNFFPGGPNLRVWGANDTVARIVNVEDYMREAA FT GEGRFDAGWGPEFWGGTGDDAVAVVPIRAVEAGLGEVNAGWTLAHMEYPVKVRLLDVDD FT RTIGPGGSLPLNANREYTAAGATHVPGPYARVLYVVVDQNADRCVGVRVQGQGAVIDVD FT PALNYVIGGADLGMLPLIQWSVGLGAEDMAQGSIAQTQRWVRMYGNEDDWESAWHLVSS FT AYTVYSPAFRRSGVAVEGGFWAQPAAGAAPFPLGGLAGWVRYDNQARAAQVALCRERAD FT MAECPWGGYRERGVRPGSVANWQYVRFDPTVAVGVAAHFWSVVKVMVAPVPDRAAALAD FT MAWGKGKVQAMGEDVINGQMGQPESMMRGVALNENQGLAAATVRRVVGLENESMQTTHW FT STTEVAMNGYYGRAGATAHHAAFPLSEGGTMRKRIPAIEMRENGVEGDLMNDDLYSIGT FT AAGYLAVEGMAGAQGGIWDVVQYQLPGPDDEARGVMNTVGAMGGWTRAVTPVDNVATMR FT DNGVEGEPCGIVMSLPTSGTAVVDRLANFGLPPARAELREVPFGGYQRSVTNTNHRVKV FT SVSGGRAVVQKGNKAEMNPVFVNRTPGQTTLGQPTTDTTGMTTADFLDI" FT CDS 3114..5294 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="nonstructural protein; ORF2" FT /db_xref="GOA:E3W912" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:E3W912" FT /protein_id="ADP37187.1" FT /translation="MITKALAQGREEDWIKITTNTTKIKLKSLRPLDGWEHSGWGLGLR FT LALELVSEPTRETMSGVIRQIRIGKLDPTKVFKSISNQAKVSGCGLCREWKEYVNWELL FT GGYQMITAQQMGEEVAHQVTEKAKSEEAGSDRINRALESILGPLRGTCTVPCSQREFLL FT CRDKWAKNTSGYIGLGQNLGRQKIDVALNSDIKALERMMEGEFENRPFIKSEPGKSRPV FT VNSNISCYLNLEYGWVTIKKTLKKYLGKRTTIFDDASQKVLLWQEMIIGADNHREIKVP FT LDYSRFDSTIGKTQIMKCVRLLLDMVRGNDNWKRSVTERFERQTVYIDGYGKLRWENSV FT LSGWRWTSIITSVINLAILKATGADASGVGIKVQGDDVKISFQTIREAERCVEEINALG FT YEINPGKVFASRKRDEYLRMVAEEGKMAGYVIRCLPKIVFTSPTEEVTTWEERIRGTVS FT KWMRVLSRGGDREVAKYWMKRDLCGLSGENSELIDSWLRTPASVGGGGCAWLLGEGNLW FT TGLVLREQEEAEVVERSNHKMMSDYGGSVPARRWIKSVTKGAKPAFGFKRIERVKPLGN FT WLKDLRPVAESIKSISDLVETSQVPKFRFKEIYDWTPFMVHKRNALIEEKNWDKLCSLY FT HNEGEVRLYKRILPRWMWLSMIKNELTWVSMPPNIANSEVASLAKERVEYKVLSKVLRY FT HRTVSRETLTRFSIGGEYVLSAKLNDRQRILQ" FT CDS 5542..6450 FT /codon_start=1 FT /product="structural protein" FT /note="ORF3" FT /db_xref="GOA:E3W913" FT /db_xref="InterPro:IPR036048" FT /db_xref="UniProtKB/TrEMBL:E3W913" FT /protein_id="ADP37188.1" FT /translation="MSNKMKSFLLVLLCLCVGEGIVPMFRREWCLCTAGNARVPLVGEG FT RAEKIELFNQSATCGKKELIITWKGKRWCYDIESKRGKILVKTLSGGGHLEREGKGYKL FT VRNGFHLASFGGKKEEIQDSSHIEKVNGKDAIVKKGQHVEHLPGGNDLIVTEGGNLCGN FT VGFFDNTQCTYNSVINIGGGSVDNSQEAKNDKSNTIDNLIDMLPLVVGIAGGCLIVIVV FT LYLTIKYCKCKKKRTNPEPAEPEEHEMRDLRRRLEPRPPYQRQMGVEFEINEALEFMGV FT EGSESPDSGCQSDEEGFRVGV" XX SQ Sequence 6688 BP; 2022 A; 1197 C; 2130 G; 1339 T; 0 other; aaaaagacaa cagaaaaacc gagaaaatct ctctttttcc tgaactaaac tggtgcatag 60 ttcagtaaca aaccatccgc tttgcaacag ggaagcgggc cgtaactcca gtggtgacat 120 ggggaacgga cattagctta ctccgctaag ggagtgagga gacctgactg aggaagtagg 180 atgcacctca ggacttagaa ttcggtttag tcatctatgg tagtgacccc aaaacgacta 240 gttcgggaac gggggacccc actgccgcag gggtatcgac gggctactac acccacttca 300 gccttccctc cggggggggt agaaaggtgg gtcgagcggt gaggagaagg gttgtcaaat 360 taaaacaact ctccgactgc gatcttattt cggtagtccc gggccggcgt tgatactcag 420 gtaaggtccg gatgtcaacc aactatggaa ccaaacacat ctgtcattgc aacggagcag 480 cagcaggctg ccatgagaga ggtggaggcc gaggcggcgg ccagagacga agtggtggag 540 aagatcgcat tcgctgaagg agcgatgatg gtacagacga ggaggttacc atcaggaaag 600 tcgtcggtag gaggttttct cggcgaactg gcacagaaca tacgtgccat gaatcggtca 660 ttgcacacag ataccaacat gctgaccgaa ggggcgatgg tggacagagc gagggcaaaa 720 gtacacaaaa tcattaggga agggaatttg gactctaggg tattttcaaa cacggggagc 780 aacactatgt tgtcactgtg ggtaccagca gtaccgggac caccggcagt accggagcat 840 tgggacgttg cgccgtcctg gttcgtatgc agaccgggga aaaagggggg gataaagatc 900 acacaaagcg catcaatggc agcattaaac ccactattta gaggcgcaga cgtggggcca 960 atcgggacag cagtcagggc ggatgtaaac gcattttcaa tgaatgcagt tctgggagca 1020 ctaagagccg ggggatttaa caccgaacat tccctggtgt cattcgttga accactaatt 1080 cggatcttgc taatgggggt acaaacacaa gacaggggga ccagcccatg ggattgggtt 1140 ggagggatga gttcgcgaat agtcaatccc ctagtattca caacaagcgg gaacttcttc 1200 ccagggggac caaatttgag ggtgtgggga gccaacgata cagtggccag gatagtaaac 1260 gttgaggact acatgcgcga ggcggccggg gaggggaggt tcgacgctgg atggggaccg 1320 gaattctggg gtgggacagg ggacgacgca gtggcggtgg taccgataag ggcagtagaa 1380 gcagggctag gagaagtaaa cgcagggtgg acattggcac acatggaata cccagtcaag 1440 gttagactac ttgacgtcga cgaccgaaca attggaccag gggggagcct gcccctaaac 1500 gcaaacagag aatacacggc ggcaggagct acgcatgtac ccgggcccta tgccagggta 1560 ctgtacgtcg tcgtggacca aaacgcagac aggtgtgtgg gggtgagagt gcagggacag 1620 ggtgctgtaa ttgacgtgga tccggcgttg aattacgtga tagggggagc ggatttgggg 1680 atgttgccgt tgatacagtg gagtgtaggg ctgggggccg aggacatggc gcagggatcg 1740 attgcacaga cgcagcgatg ggtgaggatg tatggaaacg aggacgattg ggaatcagcg 1800 tggcatctag tgtctagcgc gtacacagtg tacagcccgg cattcaggag atcgggtgtc 1860 gcagtggagg gaggattctg ggcgcaacca gctgcagggg cagcaccgtt tccactagga 1920 ggattggcag ggtgggtgag gtacgacaat caggcacggg cggcgcaggt tgcactttgc 1980 agagagaggg cggatatggc ggagtgtcct tggggggggt acagggagag aggggtgaga 2040 ccggggagtg tggcaaactg gcagtacgta aggttcgatc ccacagtggc tgtaggagta 2100 gctgctcact tctggtcggt agtgaaggtg atggtggctc ccgtcccaga cagagcggct 2160 gctctggcgg acatggcgtg ggggaagggg aaggtgcaag ccatgggtga ggatgtgatc 2220 aacgggcaga tgggacaacc tgagtccatg atgagagggg tggcgctgaa cgagaaccag 2280 ggactagcgg cggctacagt caggagggtg gttgggctgg agaacgagtc gatgcaaaca 2340 acgcactgga gtacaacgga ggtagcaatg aacgggtact acgggagagc aggagcaaca 2400 gcacaccacg ctgcatttcc gttgtccgag ggggggacaa tgcgaaaacg aataccagct 2460 atagagatga gggagaacgg ggtggagggg gacctgatga acgatgatct ctattcaatt 2520 ggaacggcag cggggtacct ggcggtagag gggatggcag gtgcgcaggg gggtatctgg 2580 gacgtggtcc agtaccagct gcctgggcct gacgatgagg cgaggggggt gatgaacacg 2640 gtgggggcga tggggggatg gacgagggcg gtgacaccag tagacaatgt ggccaccatg 2700 agggacaacg gggttgaggg ggaaccttgt ggaatagtga tgtctctacc aacaagtggg 2760 accgctgtgg tggataggtt agctaatttc ggattaccac cagcgagggc ggaattaaga 2820 gaagtaccat ttggcgggta ccaaagatca gtcacaaaca ccaaccacag agtcaaggtg 2880 agtgtgagtg gggggcgagc agttgttcaa aaagggaaca aagccgagat gaatccagtc 2940 tttgtcaata ggacaccagg acaaacgacc ctaggccaac caacaacaga cactacaggg 3000 atgacaactg cagatttttt agatatatag acccctgggc accaaaaaga agtagaaaga 3060 ggaatgcagt tggagcacta ctacaattag acccaaattt aggacttaag agaatgataa 3120 ccaaagcatt ggcccaggga cgagaagaag attggattaa gataaccacc aatactacaa 3180 agatcaaatt gaaatcacta aggccactgg atggatggga gcattcagga tggggactgg 3240 gactgaggtt agccttagaa ctagtttctg agccaacgag agagacaatg tcaggggtaa 3300 ttagacaaat taggataggg aagctagatc caaccaaggt atttaaatca attagtaacc 3360 aggcgaaagt tagcgggtgc gggctatgta gggagtggaa ggagtacgta aattgggaat 3420 tactaggggg gtaccagatg ataacagccc aacagatggg tgaagaggta gcacaccagg 3480 tgaccgaaaa ggctaaaagc gaggaagcgg gaagcgatag gataaatagg gcattagaat 3540 caattttagg gccactaagg ggtacatgca cggtaccgtg ctcacaaagg gaatttttat 3600 tatgtaggga taaatgggcc aaaaacacgt ccgggtacat agggttaggg caaaatttag 3660 ggcgacagaa gatagacgta gcacttaatt cagacatcaa ggcactggaa aggatgatgg 3720 agggagaatt cgagaacaga ccatttatta aaagtgaacc agggaaaagc aggccggtag 3780 ttaatagtaa tatatcgtgt tacctaaatt tagagtatgg gtgggtaacc attaaaaaga 3840 cactgaaaaa atacttaggc aagaggacaa caattttcga cgacgcaagc caaaaggtac 3900 tgttatggca agaaatgata attggagcag ataaccatag ggagattaaa gtgccactag 3960 actactcgcg gttcgattca acaattggga aaacgcaaat catgaagtgt gttagactgc 4020 tattagacat ggtgcgaggt aacgacaatt ggaaaaggtc agttactgaa agattcgaga 4080 gacaaacggt gtacattgac ggttacggaa aactcaggtg ggaaaacagc gtacttagcg 4140 gatggagatg gacaagtata atcacatctg taataaattt ggccattctt aaggcgaccg 4200 gagccgatgc gagcggagta gggattaaag tccagggaga tgatgttaaa atcagcttcc 4260 aaacaattcg agaagcggaa aggtgtgtcg aagaaattaa cgctttaggg tatgaaatta 4320 acccgggtaa agtatttgcg tcaaggaaaa gggacgagta tctcaggatg gtagcggaag 4380 aggggaaaat ggcaggttat gtaattaggt gtctaccgaa aattgtattt acatcaccaa 4440 cagaagaggt taccacatgg gaagaacgaa ttaggggaac agtgtcaaaa tggatgaggg 4500 tgttatcacg ggggggggat agggaagtag ctaaatattg gatgaaacgc gatttgtgtg 4560 gattgagtgg agagaattcg gaattaatag atagctggtt acgtactcca gcatccgtgg 4620 gggggggtgg ttgtgcatgg ttacttgggg agggaaattt gtggacggga ttagtactta 4680 gggaacagga ggaagcagaa gtggtggagc gttcaaatca caaaatgatg tcggattacg 4740 gggggtcagt tcctgcccgt agatggatca agagtgtgac gaagggcgca aaaccggctt 4800 ttgggttcaa gaggatagag agggtaaagc cactagggaa ctggttaaaa gatctaaggc 4860 cagtggcgga atcaattaaa tcaattagtg acttagtcga aacatcacag gtaccaaaat 4920 tcagatttaa ggaaatttat gattggacac cattcatggt acacaagagg aacgcgctca 4980 tagaagaaaa gaactgggac aaattgtgct cgctttatca taatgaaggg gaagtgagac 5040 tatataaaag gatattaccc aggtggatgt ggctgagtat gataaaaaat gagttaacat 5100 gggtaagtat gccaccaaac attgctaatt cggaagttgc ttcacttgca aaagaaagag 5160 tggagtacaa agtgttgagt aaagtattga ggtatcaccg aaccgtctca agagaaacgc 5220 tcactcgttt ttctattggt ggggagtatg tactgagtgc taaactcaac gacaggcaaa 5280 ggatattaca gtaggacggt ggtagctgaa acaggggcta ctagcacaaa gaagctatct 5340 ggaatagggg atagtgtaac ctgatcacgg aactaatacg caccgtgtac ctattagtaa 5400 ggcgtatatg gtaggtgccg gaggaggcga cgatcccggg acttcactta ccgcagaggc 5460 agctatagta ggttaggcgt ggaattccgg ccattttaga ggacctattc ggaccggcgt 5520 ggttgtcgaa gtaagacccg gatgtcaaac aagatgaaga gttttttact ggtgctttta 5580 tgtttgtgtg taggggaagg gattgttcca atgttcaggc gagaatggtg tttgtgcact 5640 gcagggaatg cgagagtacc cttggtggga gagggaaggg ctgagaagat cgagctattc 5700 aatcagagcg ccacatgtgg gaagaaagag ctaataataa cgtggaaggg aaagaggtgg 5760 tgctacgata ttgagagcaa gcgagggaaa atactagtaa agacactgag cggaggggga 5820 catctggaac gagagggaaa ggggtacaag ttagttagga acgggttcca tcttgcttca 5880 ttcgggggta aaaaagagga aatacaggat tcaagtcaca tagagaaagt aaacgggaaa 5940 gacgcgatag ttaagaaagg gcaacacgta gaacatcttc caggggggaa cgatttaatt 6000 gttacagagg gcgggaacct gtgtgggaac gtggggttct tcgataatac gcagtgtaca 6060 tacaacagtg ttataaatat aggaggggga agtgttgaca attcacaaga agccaagaac 6120 gataaatcaa acacaattga caatttaatt gatatgttac ctttagttgt aggaatagcc 6180 gggggctgtc tcatagtgat agtagtctta tacttaacaa ttaaatactg taaatgcaag 6240 aagaagagga ccaacccaga accagcggaa ccggaggaac acgagatgag ggatctcagg 6300 agaaggttag agccacgccc tccataccaa agacagatgg gtgttgagtt tgaaataaat 6360 gaagctctcg aattcatggg cgtcgaaggg agtgaaagcc cagactcagg atgtcagtca 6420 gatgaagagg gattcagagt aggagtctag atggaacgaa gagataggtc accactatcg 6480 tccgcatata attttacaca attggactag tactattgta caggggtacc atttaccctg 6540 ccagaccgac aaataggtcg ggtgtttagt gagaaagtcg ctagcacctg ggcgaaagat 6600 ggggcaacat actgactctt gggagtgaga ccagggggaa gtatgtaagg catggttagg 6660 cttgaccccg tgggtcaagg ccgtgctg 6688 //