ID HQ333144; SV 1; circular; genomic DNA; STD; VRL; 2782 BP. XX AC HQ333144; XX DT 30-MAR-2011 (Rel. 108, Created) DT 01-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Sweet potato leaf curl South Carolina virus isolate US:SC:648B-9, complete DE genome. XX KW . XX OS Sweet potato leaf curl South Carolina virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2782 RX DOI; 10.1007/s00705-011-0930-2. RX PUBMED; 21302123. RA Zhang S.C., Ling K.S.; RT "Genetic diversity of sweet potato begomoviruses in the United States and RT identification of a natural recombinant between sweet potato leaf curl RT virus and sweet potato leaf curl Georgia virus"; RL Arch. Virol. 156(6):955-968(2011). XX RN [2] RP 1-2782 RA Zhang S., Ling K.-S.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL U.S. Vegetable Laboratory, United States Department of Agriculture, RL Agricultural Research Service, 2700 Savannah Highway, Charleston, SC 29414, RL USA XX DR MD5; 717ed526bb725f8294081750c50c4bbc. XX FH Key Location/Qualifiers FH FT source 1..2782 FT /organism="Sweet potato leaf curl South Carolina virus" FT /host="Ipomoea batatas" FT /isolate="US:SC:648B-9" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="2006" FT /db_xref="taxon:999288" FT gene 90..431 FT /gene="V2" FT CDS 90..431 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:F2X5J2" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:F2X5J2" FT /protein_id="AEA08495.1" FT /translation="MDMWDPLQNPLPDTLYGFRCMLSVKYLQGILKKYEPGTLGFELCS FT ELIRILRVKQYGRANSRFAEISSLWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFS FT KRPDEEKEG" FT gene 256..1020 FT /gene="V1" FT CDS 256..1020 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:F2X5J3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F2X5J3" FT /protein_id="AEA08494.1" FT /translation="MVGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRSVQMKRRKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLVRDRRPNKDPLTFVQAFAMCDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALIRKFFKGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1017..1454) FT /gene="Ren" FT CDS complement(1017..1454) FT /codon_start=1 FT /gene="Ren" FT /product="replication enhancer protein" FT /note="C3" FT /db_xref="GOA:F2X5J4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F2X5J4" FT /protein_id="AEA08492.1" FT /translation="MDSRTGESLSHAQITRAAEFFNNPMSVGQTAPFHLRLIYVHTNNI FT NTKKVIKLQLQVNHRNRREIGFQKIFLQFRIVTTQLTGVIPSWTGILQRLKWHICNSLA FT SLGFFSLINLVYVIRHLPESVRWIEEVDVIDCKDDIKILLY" FT gene complement(1168..1617) FT /gene="Trap" FT CDS complement(1168..1617) FT /codon_start=1 FT /gene="Trap" FT /product="trans-activating protein" FT /note="TrAP; C2" FT /db_xref="UniProtKB/TrEMBL:F2X5J5" FT /protein_id="AEA08491.1" FT /translation="MSNLPSGYKRKCPIQEPLHTAAKKAKRKAPEQRTRIVWKGCGCSA FT FITNACKFQHGFTHRGVTKSCTDYESSRILQQSHVCGSDCSIPSTTDICPYQQHQHKEG FT HQVAASSQPQEQEGNWIPEDLPPIPNSNNPADWCYSQLDWYFATP" FT gene complement(1526..2620) FT /gene="Rep" FT CDS complement(1526..2620) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /note="C1" FT /db_xref="GOA:F2X5J6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F2X5J6" FT /protein_id="AEA08490.1" FT /translation="MPRAGRFNIKAKNYFLTYPQCSLTKEEALDQLRNLNTPTNKKFIK FT ICRELHENGEPHLHVLLQFEGNYQCTNQRFFDLVSPSRSAHFHPNIQRAKSSSDVKSYV FT DKDGDTIEWGEFQVDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYH FT NLCGNLDRIFSPPPSVYSSPFLSSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNIIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF FT WIQEEVSHSGTSAHSGEEGQEEGS" FT gene complement(2206..2469) FT /gene="C4" FT CDS complement(2206..2463) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F2X5J7" FT /protein_id="AEA08493.1" FT /translation="MGNLISTCYCSSKGTTNARIRDSSTLYHHQGRLTFTPISRELNPA FT PMSSPMSIRTVTQLNGVNSRSTADLLEEASRRLMTQQQRP" XX SQ Sequence 2782 BP; 724 A; 562 C; 662 G; 834 T; 0 other; accggtgccc gcgcgacttt tattgtggga cccacgcgct ttgctttaat tatttaaagg 60 cgttcttggt gcagactttg tcgccaagaa tggatatgtg ggacccactt cagaacccac 120 tcccagatac tttatacggt ttccgttgta tgctttctgt aaaatacctg caaggtattt 180 tgaagaaata cgaaccagga accctagggt tcgaactttg ttccgaactc atccgcatac 240 tgcgtgtcaa gcaatatggt agggcgaatt cccgtttcgc ggagatttca tccctatggg 300 gggagaccgg taagacggag gctgaacttc gagacagcta tcgtgcccta cactgggaat 360 gctgtcccaa ttgctgcccg aagctatgtc ccggtttctc gaagcgtcca gatgaagaga 420 aggaagggtg atcgcatccc gaagggatgt gttggtccct gtaaggtaca ggactatgag 480 ttcaagatgg atgtcccaca tagtgggacc tttgtttgtg tttctgattt tactagaggt 540 actgggctta cccatcgttt gggtaagagg gtgtgtatta agtccatggg tattgacggt 600 aaggtctgga tggacgacaa cgtcgccaag agggaccata ccaacattat tacttactgg 660 ttggtccgag atcggaggcc caataaggat cctttgacat ttgtacaggc gtttgcaatg 720 tgtgataacg agcccactac tgctaagatc cgtatggatc tgagagatag aatgcaggtg 780 ttgaagaagt tctctgttac agtttcagga ggcccttata accacaaaga gcaggctttg 840 attaggaagt tttttaaggg attgtataat catgttactt ataatcataa ggaggaggcc 900 aaatatgaga atcatttaga aaatgcgtta atgttgtatt ctgctagcag tcatgctagt 960 aatcctgtgt atcagaccct gcgttgcagg gcttattttt atgattcgca caacaattaa 1020 taaagaagta tttttatatc atctttacaa tctattacat cgacttcttc aatccatcta 1080 actgattcag gcagatgcct gattacataa actaaattga taagagaaaa aaaacctaaa 1140 ctagctaagc tattacatat atgccattta aggcgttgca aaataccagt ccaactggga 1200 ataacaccag tcagctgggt tgttactatt cggaattgga ggaagatctt ctggaatcca 1260 atttccctcc tgttcctgtg gttgacttga agctgcaact tgatgacctt ctttgtgttg 1320 atgttgttgg tatggacata tatcagtcgt agatggaatg gagcagtctg acccacagac 1380 atgggattgt tgaagaattc tgctgctctc gtaatctgtg catgacttag tgactccccg 1440 gtgcgtgaat ccatgttgga acttgcaggc gttggtgatg aaggctgaac aaccacagcc 1500 cttccacact atccttgtcc tttgctcagg agccttcctc ttggccttct tcgccgctgt 1560 gtgcagaggt tcctgaatgg gacacttcct cttgtatcca gaagggagat tggacatcgc 1620 agaatatagc gtttgctgtt gcccaattct tgagtgctcc ttgctctggt ttgtctagcc 1680 agagtttaaa tgaggaaccc tctcctggat tgcagaggaa gatagtggga attccgcctt 1740 taatttgaac tggctttccg tatttacagt tggattgcca gtccttctgg gcccccatga 1800 attctttaaa gtgctttagg tattgggggt tgacgtcatc aatgatgtta taccaagcac 1860 tgttgctata cacttttgga ctcagatcta aatgaccaca cagataatta tgtggaccta 1920 aagacctagc ccaaactgtt ttacctatcc tacttgggcc ttctattaca atacttatgg 1980 gcctatctgg ccgcgcagcg gaatccatga cattttcagc agcccaatcg ctgataatgt 2040 caggaacatt attgaaagaa gaagataaaa aaggtgaaga atatacagaa ggaggaggag 2100 aaaaaatcct atctaaatta ccacataaat tgtggtattg aaaaataaat ttctcaggga 2160 gtttttccct gataatttgt aaggcagctt ctttacttcc tgagtttaag gcctctgctg 2220 ctgcgtcatt agccgtctgc tggcctcctc gagcagatct gccgtcgacc tggaattcac 2280 cccattcaat tgtgtcaccg tccttatcga cataggactt gacatcggag ctggatttag 2340 ctctctggat attggggtga aagtgagccg accttgatgg tgatacaagg tcgaagaatc 2400 tctgattcgt gcattggtag ttcccttcga actgcaatag cacgtggaga tgaggttccc 2460 cattttcatg cagctctctg catattttta tgaatttttt gttggttggg gtgttgaggt 2520 tacgaagctg gtcgagagct tcttctttgg tgagagagca ttggggatat gtgaggaaat 2580 agttttttgc ttttatatta aaacgcccgg ctctaggcat gttgaaaaag caaatggtgg 2640 aacacaaact tgctgtatga attggtggaa cggtggacaa tttatatgtg tccaccaaat 2700 ggcattttgg taatttgaac aactttaatt tgaattctga aagcctattg gtcctccgta 2760 aagcgggcac cgtattaata tt 2782 //