ID HQ333143; SV 1; circular; genomic DNA; STD; VRL; 2824 BP. XX AC HQ333143; XX DT 30-MAR-2011 (Rel. 108, Created) DT 01-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Sweet potato golden vein associated virus isolate US:MS:1B-3, complete DE genome. XX KW . XX OS Sweet potato golden vein associated virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2824 RX DOI; 10.1007/s00705-011-0930-2. RX PUBMED; 21302123. RA Zhang S.C., Ling K.S.; RT "Genetic diversity of sweet potato begomoviruses in the United States and RT identification of a natural recombinant between sweet potato leaf curl RT virus and sweet potato leaf curl Georgia virus"; RL Arch. Virol. 156(6):955-968(2011). XX RN [2] RP 1-2824 RA Zhang S., Ling K.-S.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL U.S. Vegetable Laboratory, United States Department of Agriculture, RL Agricultural Research Service, 2700 Savannah Highway, Charleston, SC 29414, RL USA XX DR MD5; 408720879a1f138248f09f3aa8ead92f. DR EuropePMC; PMC3485178; 23082767. XX FH Key Location/Qualifiers FH FT source 1..2824 FT /organism="Sweet potato golden vein associated virus" FT /host="Ipomoea batatas" FT /isolate="US:MS:1B-3" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="2007" FT /db_xref="taxon:688540" FT gene 72..470 FT /gene="V2" FT CDS 72..470 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:F2X5I6" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:F2X5I6" FT /protein_id="AEA08489.1" FT /translation="MMTFLYKDQSGFHPWRPSMAELWDPLQNPLPDTLYGFRCMLSVKY FT LQSILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAEISSIWGETGKTEAELRDSYR FT ALHWECCPNCCPKLCPGFKRRPDEEKEG" FT gene 295..1059 FT /gene="V1" FT CDS 295..1059 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:F2X5I7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F2X5I7" FT /protein_id="AEA08488.1" FT /translation="MTGRIRVSPRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1075..1509) FT /gene="Ren" FT CDS complement(1075..1509) FT /codon_start=1 FT /gene="Ren" FT /product="replication enhancer protein" FT /note="C3" FT /db_xref="GOA:F2X5I8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F2X5I8" FT /protein_id="AEA08486.1" FT /translation="MDSRTGESLNHAQTTRAVEFDTNPMSVGRTAPFHLRIMYVHENTQ FT GRTILKFQLRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELAN FT LGFFSLVNLVFVIRYLPRVCSWIDELDTVDCNDDVKVLLY" FT gene complement(1226..1672) FT /gene="Trap" FT CDS complement(1226..1672) FT /codon_start=1 FT /gene="Trap" FT /product="trans-activating protein" FT /note="TrAP; C2" FT /db_xref="GOA:F2X5I9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F2X5I9" FT /protein_id="AEA08485.1" FT /translation="MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA FT FITTTCKYQHGFTHRGITKSCSDYESSRIRHQPHVCGSDCTIPPQNNVCPREHTGENHP FT QIPAEGELQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP" FT gene complement(1581..2675) FT /gene="Rep" FT CDS complement(1581..2675) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /note="C1" FT /db_xref="GOA:F2X5J0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F2X5J0" FT /protein_id="AEA08484.1" FT /translation="MPRQPGFRVSAKNVFLTYPKCSLSKETALELLKAVNCPSDKLFIR FT VSQEKHQDGSLHLHALIQFKGKAQFKNPRHFDLQHPNSSTQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGTFQVDGRSARGGQQTANDAAAEALNAGSAEAALQIIREKLPIDFIFQYH FT NLRSNLDRIFSPPPSVYSSPFLSSSFNNVPDIISDWAAENVMDAAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWATANAIFCDVQSPF FT WIQEEVSHSGATAHRGEEGQEESS" FT gene complement(2261..2518) FT /gene="C4" FT CDS complement(2261..2518) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F2X5J1" FT /protein_id="AEA08487.1" FT /translation="MGLCTSMLSSNSRVKPSLKIPDISTCNTPTAPPNSIQISRELNHH FT PMSNPTSRRTVITSTGVLFKSTEDLLEEVSRQLMMQQQRP" XX SQ Sequence 2824 BP; 744 A; 593 C; 672 G; 815 T; 0 other; accggtgccc gccgcgccct ttaaaagtgg gccccacaag gggaccacgc gtcttttccg 60 tactctcttt aatgatgacc ttcctttata aggaccaatc aggtttccac ccttggcgcc 120 caagtatggc tgaattgtgg gaccctctgc agaacccact cccagatact ttatacggtt 180 ttaggtgtat gctatccgtg aaatacttgc aaagtatttt gaagaaatac gagccaggaa 240 ccttagggtt cgagctctgt tcggagttaa tccgtatatt cagagtcagg cagtatgaca 300 gggcgaattc gcgtttcgcc gagatttcat ccatatgggg ggagaccggt aagacggagg 360 ctgaacttcg agacagctat cgtgccctac actgggaatg ctgtcccaat tgctgcccga 420 agctatgtcc cggtttcaag aggcgtccgg atgaagagaa ggaggggtga ccgcatcccg 480 aagggatgtg tgggtccctg taaggtccag gactatgagt tcaagatgga cgttccccac 540 acgggaacgt ttgtctgtgt ctcggatttt acaaggggta ctgggcttac ccatcgtctg 600 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggga aggtctggat ggatgataat 660 gtggccaaga gagatcacac caatatcatc acgtattggt tgattcgtga cagaaggccc 720 aataaggatc cgctgaactt tggccagatc ttcactatgt acgacaatga gcccactact 780 gctaagatcc gaatggatct gagggataga atgcaggtct tgaagaagtt ttctgttaca 840 gtttcaggag gtccatacag ccacaaggag caggcattaa ttaggaagtt ttttaagggt 900 ttgtataatc atgttactta caatcacaag gaagaagcta agtatgagaa tcaattagag 960 aatgcactta tgctgtatag tgctagcagt catgctagta atcctgtgta tcagaccctg 1020 cgttgcaggg cttatttcta tgattcgcat aataattaat aaaatgctat tttattaata 1080 gagtaaaacc tttacatcat cattacaatc tacagtatct aattcatcta tccaagaaca 1140 tactcttgga agatatctaa taacaaaaac taaattaact aaactaaaaa accctaaatt 1200 agctaattca ttacatatgc gccatttaag gcgttccaaa ataccagtcc agctgtgaat 1260 agcaccagtt agacgggtcg tcaagatccg gaattggagg aagatcttgt ggaatcccag 1320 ttgcctcctt tccctgtagt tcaccctcag ctggaatttg aggatggttc tcccctgtgt 1380 gttctcgtgg acatacatta ttctgaggtg gaatggtgca gtccgaccca cagacatggg 1440 gttggtgtcg aattcgactg ctctcgtagt ctgagcatga tttagtgatt cccctgtgcg 1500 tgaatccatg ctggtacttg caggttgtgg tgatgaaggc tgaacagccg caacccttcc 1560 acactatcct cgtcctctgt tcaggaactt tcctcttggc cttcttcgcc tctgtgtgca 1620 gtggctcctg aatgggacac ttcctcttgt atccagaaag gggattggac atcgcagaat 1680 atagcgtttg ctgttgccca gttcttgagt gcttcttgct ctggcttgtc cagccagagt 1740 ttaaatgaag atccctctcc tggattgcag aggaagatag tgggaattcc gcctttaatt 1800 tgaactggct ttccgtattt acagttggat tgccagtcct tctgggcccc catgaattcc 1860 ttgaagtgct ttaggtattg ggggttgacg tcatcaatga cgttatacca agcactgtta 1920 ctatatactt ttgggcttag atctaaatgc ccacacaaat aattgtgagg gcccaaagac 1980 ctggcccata ctgttttgcc tattctgctt gggccttcaa taacaatgga tatgggtcta 2040 tccggccgcg cagcggcatc catgacattt tcagcggccc agtcgctgat aatgtcaggt 2100 acattattga aagaagaaga taaaaaagga gaagaatata cagaaggagg aggagaaaaa 2160 attctatcta aattactacg taaattatga tattgaaaaa taaaatctat aggaagtttc 2220 tccctaatta tttgtaatgc tgcttcagca gagcctgcgt ttaaggcctc tgctgctgca 2280 tcattagctg tctgctgacc tcctctagca gatcttccgt cgacttgaaa agtaccccag 2340 tcgatgtaat caccgtcctt ctcgatgtag gatttgacat cggatgatga tttagctccc 2400 tggaaatttg gatggaattg ggtggagctg ttggggtgtt gcaggtcgaa atgtctggga 2460 tttttaaact gggctttacc cttgaattgg atgagagcat ggaggtgcaa agacccatct 2520 tggtgttttt cctggctaac tctgataaac aatttatcag atgggcagtt tactgccttt 2580 aatagctcaa gagctgtttc tttagagaga gaacatttgg gataagtaag aaagacattt 2640 ttggctgaga ctctaaaacc tggttgacga ggcatattgg tgtccctcta aactctacgg 2700 aattggtgtc tttggtgtcc catttatacc tgggacacca atggcatttt ggtaaataaa 2760 acaactttaa tttgaattca gcaatcctat tggtccgtca taaagcgggc accgtattaa 2820 tatt 2824 //