Dbfetch
ID HQ333142; SV 1; circular; genomic DNA; STD; VRL; 2828 BP. XX AC HQ333142; XX DT 30-MAR-2011 (Rel. 108, Created) DT 01-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Sweet potato leaf curl virus isolate US:MS:WS3-8, complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2828 RX DOI; 10.1007/s00705-011-0930-2. RX PUBMED; 21302123. RA Zhang S.C., Ling K.S.; RT "Genetic diversity of sweet potato begomoviruses in the United States and RT identification of a natural recombinant between sweet potato leaf curl RT virus and sweet potato leaf curl Georgia virus"; RL Arch. Virol. 156(6):955-968(2011). XX RN [2] RP 1-2828 RA Zhang S., Ling K.-S.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL U.S. Vegetable Laboratory, United States Department of Agriculture, RL Agricultural Research Service, 2700 Savannah Highway, Charleston, SC 29414, RL USA XX DR MD5; c6893a59bc3c768831d0988b31a68517. XX FH Key Location/Qualifiers FH FT source 1..2828 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea setosa" FT /isolate="US:MS:WS3-8" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="2007" FT /db_xref="taxon:100755" FT gene 27..470 FT /gene="V2" FT CDS 27..470 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:F2X5I0" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:F2X5I0" FT /protein_id="AEA08483.1" FT /translation="MGPTRGPRVFSVLSLMMTFLYKDQSGFHPWRPSMAELWDPLQNPL FT PDTLYGFRCMLSVKYLQSILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAEISSIW FT GETGKTEAELRDSYRALHWECCPNCCPKLCPGFKRRPDEEKEG" FT gene 295..1059 FT /gene="V1" FT CDS 295..1059 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:F2X5G9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F2X5G9" FT /protein_id="AEA08482.1" FT /translation="MTGRIRVSPRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQVFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1075..1509) FT /gene="Ren" FT CDS complement(1075..1509) FT /codon_start=1 FT /gene="Ren" FT /product="replication enhancer protein" FT /note="C3" FT /db_xref="GOA:F2X5G4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F2X5G4" FT /protein_id="AEA08480.1" FT /translation="MDSRTGESLSHAQTTRAVEFDTNPMSVGRTAPFHLRMMYVHESTQ FT GRTILKFQLRVNYKERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELAN FT IGFFSLVNLVFVIKYLPRVCSWIDEVDTVDCNDDVKVLLY" FT gene complement(1226..1672) FT /gene="Trap" FT CDS complement(1226..1672) FT /codon_start=1 FT /gene="Trap" FT /product="trans-activating protein" FT /note="TrAP; C2" FT /db_xref="GOA:F2X5G5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F2X5G5" FT /protein_id="AEA08479.1" FT /translation="MSNLPSGIKRKCPIQEPLHAEAKKSKRKVPETRTRIVWKGCGCSA FT FITQTCKYQHGFTHRGITKSCSDYESSRIRHQPHVCGSDCTVPSQNDVCPREHTGENHP FT QIPVEGQLQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP" FT gene complement(1581..2675) FT /gene="Rep" FT CDS complement(1581..2675) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /note="C1" FT /db_xref="GOA:F2X5G6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F2X5G6" FT /protein_id="AEA08478.1" FT /translation="MAPPKRFRISSKNYFITYPRCSLSKEDCLSQLLNIQTPTNKKYIH FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFH FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKSWATANAIFCDVQSPF FT WNQEEVSHSGTTARGGEEEQEESS" FT gene complement(2261..2518) FT /gene="C4" FT CDS complement(2261..2518) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F2X5I5" FT /protein_id="AEA08481.1" FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFIPTSRELNPR FT PMSSPTLTRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL" XX SQ Sequence 2828 BP; 741 A; 600 C; 682 G; 805 T; 0 other; accggtgccc gccgcgccct ttaaaaatgg gccccacaag gggaccacgc gtcttttccg 60 tactatcttt aatgatgacc ttcctttata aggaccaatc aggtttccac ccttggcgcc 120 caagtatggc tgaattgtgg gaccctctgc agaacccact cccagatact ttatacggtt 180 ttaggtgtat gctatccgta aaatacttgc aaagtatttt gaagaaatac gagccaggaa 240 ccttagggtt cgagctctgt tcggagttaa tccgtatatt cagagtcagg cagtatgaca 300 gggcgaattc gcgtttcgcc gagatttcat ccatatgggg ggagaccggt aagacggagg 360 ctgaacttcg agacagctat cgtgccctac actgggaatg ctgtcccaat tgctgcccga 420 agctatgtcc cggtttcaag aggcgtccgg atgaagagaa ggaggggtga ccgcatcccg 480 aagggatgtg tgggtccctg taaggtccag gactatgagt tcaagatgga cgttccccac 540 acgggaacgt ttgtctgtgt ctcggatttt acaaggggta ctgggcttac ccatcgcctg 600 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggga aggtctggat ggatgataat 660 gtggccaaga gagatcacac caatatcatc acgtattggt tgattcgtga cagaaggccc 720 aataaggatc cgctgaactt tggccaagtc ttcactatgt atgacaatga gcccactact 780 gctaagatcc gaatggatct gagggataga atgcaggtct tgaagaagtt ttctgttaca 840 gtttcaggag gcccatacag tcacaaggag caggctttgg ttagaaagtt ttttaagggt 900 ttgtataacc atgttactta caatcacaag gaggaagcta agtacgagaa tcatttagaa 960 aatgctttga tgctgtattc tgctagtagt catgctagta atcctgtata tcagaccctg 1020 cgttgcaggg cttatttcta tgattcgcac aataattaat aaaattatat tttattaata 1080 gagtaatacc tttacatcat cattacaatc taccgtatct acttcatcta tccaagaaca 1140 aactcttgga agatatttaa taacaaaaac taaattaact aaactaaaaa accctatgtt 1200 agctaattca ttacatatgc gccatttaag gcgttccaaa ataccagtcc aactgtgaat 1260 agcaccagtt agacgggtcg tcaagatccg gaattggagg aagatcttgt ggaatcccag 1320 ttgcctcctt tccttgtagt tgaccctcaa ctggaatttg aggatggttc tcccctgtgt 1380 gctctcgtgg acatacatca ttctgagatg gaacggtgca gtccgaccca cagacatggg 1440 gttggtgtcg aattcgactg ctctcgtagt ctgagcatga cttagtgatt cccctgtgcg 1500 tgaatccatg ctggtacttg caggtttggg tgatgaaggc tgaacagccg cagcccttcc 1560 acactatcct tgtccttgtt tcaggaactt tcctcttgct cttcttcgcc tccgcgtgca 1620 gtggttcctg aatgggacac ttcctcttga ttccagaagg gagattggac atcgcagaat 1680 atagcgtttg ctgttgccca actcttgagt gctccttgct ctggtttatc taaccagagt 1740 ttaaatgaag agccctctcc tggattgcag aggaagatag tgggaattcc acctttaatt 1800 tgaactggct ttccgtattt gcagttggac tgccagtcct tctgggcccc catgaattcc 1860 ttaaagtgct ttaggtattg ggggttgacg tcatcaatga cgttatacca agcactgttg 1920 ctgtacactt tagggcttag atctaaatgc ccacacaaat aattgtgagg gcccaaagac 1980 ctggcccata ctgttttgcc tattctgctt gggccttcaa taacaatgga tatgggtcta 2040 tccggccgcg cagcggaatc catgacattt tcagcggccc agtcgctgat aatgtcagga 2100 acggcattga aagaagatga agaaaaaggt gaagaatata cagaaggtgg aggagaaaaa 2160 atcctatcta aattagaaac taaattatga aattgaaata aatatttttc agggagtttc 2220 tccctgatta tttgcaacgc agcttcttta gaacctgcgt ttagagcctc tgcggctgcg 2280 tcgttagcag tctgctgacc tcctctagca gatctgccgt cgacctggaa ttcaccccag 2340 gtgagggtat ccccgtcctt gtcaacgtag gacttgacat cggacgagga tttagctccc 2400 tggatgttgg gatgaaagtg attcgacctt gtgggtgaga caaggtcgaa gaatctgcta 2460 tttgtgcaga cgaatttacc ttcgaactgc accagcacat ggaggtgagg ttccccatcc 2520 tcgtgcagtt ctttggcgat gtgtatatat tttttgtttg ttggggtttg gatgttaagt 2580 agttgggaga ggcagtcctc tttagagaga gaacagcgtg gatacgtaat aaaatagttt 2640 tttgaagaaa ttctaaaacg tttgggcgga gccatttggt gacactcaga ctttcaaatg 2700 aattggtgac tggtgacaat ttatactatg tcaccaaatg gcattttggt aatttagaag 2760 atccttttag ctttaattca aattccgaca aatctgggac cacaaaaggc gggcaccgta 2820 ttaatatt 2828 //