ID HQ333141; SV 1; circular; genomic DNA; STD; VRL; 2829 BP. XX AC HQ333141; XX DT 30-MAR-2011 (Rel. 108, Created) DT 01-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Sweet potato leaf curl virus isolate US:MS:WS1-4, complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2829 RX DOI; 10.1007/s00705-011-0930-2. RX PUBMED; 21302123. RA Zhang S.C., Ling K.S.; RT "Genetic diversity of sweet potato begomoviruses in the United States and RT identification of a natural recombinant between sweet potato leaf curl RT virus and sweet potato leaf curl Georgia virus"; RL Arch. Virol. 156(6):955-968(2011). XX RN [2] RP 1-2829 RA Zhang S., Ling K.-S.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL U.S. Vegetable Laboratory, United States Department of Agriculture, RL Agricultural Research Service, 2700 Savannah Highway, Charleston, SC 29414, RL USA XX DR MD5; 5b0a1de99d15ab64d8b2a4dc4d1f948f. XX FH Key Location/Qualifiers FH FT source 1..2829 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea setosa" FT /isolate="US:MS:WS1-4" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="2007" FT /db_xref="taxon:100755" FT gene 72..470 FT /gene="V2" FT CDS 72..470 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:E5G5V3" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:E5G5V3" FT /protein_id="AEA08477.1" FT /translation="MITLLYKDQSGFRAWAPRMEQLWDPLQNPLPDTLYGFRCMLSVKY FT LQSILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAEISSIWGETGKTEAELRDSYR FT ALHWECCPNCCPKLCPGFKRRPDEEKEG" FT gene 295..1059 FT /gene="V1" FT CDS 295..1059 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B3Y556" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B3Y556" FT /protein_id="AEA08476.1" FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1075..1509) FT /gene="Ren" FT CDS complement(1075..1509) FT /codon_start=1 FT /gene="Ren" FT /product="replication enhancer protein" FT /note="C3" FT /db_xref="GOA:F2X5H6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F2X5H6" FT /protein_id="AEA08474.1" FT /translation="MDSRTGESLNHAQTTRAVEFDTNPMSVGRTAPFHLRIMYVHENTQ FT GRTILKFQLRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELAN FT LGFLSLVNLVFVIRYLPRVCSWIDELDTVDCNDDVKVLLY" FT gene complement(1226..1672) FT /gene="Trap" FT CDS complement(1226..1672) FT /codon_start=1 FT /gene="Trap" FT /product="trans-activating protein" FT /note="TrAP; C2" FT /db_xref="GOA:F2X5H7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F2X5H7" FT /protein_id="AEA08473.1" FT /translation="MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA FT FITTTCKYQHGFTHRGITKSCSDYESSRIRHQPHVCGSDCTIPPQNNVCPREHTGENHP FT QIPAEGELQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP" FT gene complement(1581..2675) FT /gene="Rep" FT CDS complement(1581..2675) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /note="C1" FT /db_xref="GOA:F2X5H8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F2X5H8" FT /protein_id="AEA08472.1" FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLSQLLNIQTPTNKKYIH FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPSRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNADSKEAALQIIREKLPEKYLFQYH FT NLVANLDRIFSPQPSVYSSPFSSSSFNAVPDIISDWAAENVMDAAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF FT WIQEEVSHSGATAHRGEEGQEESS" FT gene complement(2261..2518) FT /gene="C4" FT CDS complement(2261..2518) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3Y554" FT /protein_id="AEA08475.1" FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFTPTSRELNPR FT PMSSPTLTRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL" XX SQ Sequence 2829 BP; 732 A; 591 C; 697 G; 809 T; 0 other; accggtgccc gccgcgccct ttaaaagtgg gccccacaag gggaccacgc gtcttttccg 60 tactgtcttt aatgattact ttgctttata aggaccaatc aggtttccgt gcttgggcgc 120 caagaatgga gcagttgtgg gaccctttgc agaacccact cccggatact ttatacggtt 180 ttaggtgtat gctatccgta aaatacttgc agagtatttt gaagaaatac gagccaggaa 240 ccttagggtt cgagctctgt tcggagttaa tccgtatatt cagggtcagg cagtatgaca 300 gggcgaattc ccgtttcgcg gagatttcat ccatatgggg ggagaccggt aagacggagg 360 ctgaacttcg agacagctat cgtgccctac actgggaatg ctgtcccaat tgctgcccga 420 agctatgtcc cggtttcaag aggcgtccgg atgaagagaa ggaggggtga ccgcatcccg 480 aagggatgtg tgggtccctg taaggtccag gactatgagt tcaagatgga cgttccccac 540 acgggaacgt ttgtctgtgt ctcggatttt acaaggggta ctgggcttac ccatcgtctg 600 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggga aggtctggat ggatgataat 660 gtggccaaga gagatcacac caatatcatc acgtattggt tgattcgtga cagaaggccc 720 aataaggatc cgctgaactt tggccagatc ttcactatgt acgacaatga gcccactact 780 gctaagatcc gaatggatct gagggataga atgcaggtct tgaagaagtt ttctgttaca 840 gtttcaggag gtccatacag ccacaaggag caggcattaa ttaggaagtt ttttaagggt 900 ttgtataatc atgttactta caatcacaag gaagaagcta agtatgagaa tcaattagag 960 aatgcactta tgctgtatag tgctagcagt catgctagta atcctgtgta tcagaccctg 1020 cgttgcaggg cttatttcta tgattcgcat aataattaat aaaatgatat tttattaata 1080 gagtaaaacc tttacatcat cattacaatc tacagtatct aattcatcta tccaagaaca 1140 tactcttgga agatatctaa taacaaaaac taaattaact aaactcaaaa accctaaatt 1200 agctaattca ttacatatgc gccatttaag gcgttccaaa ataccagtcc agctgtgaat 1260 agcaccagtt agacgggtcg tcaagatccg gaattggagg aagatcttgt ggaatcccag 1320 ttgcctcctt tccctgtagt tcaccctcag ctggaatttg aggatggttc tcccctgtgt 1380 gttctcgtgg acatacatta ttctgaggtg gaatggtgca gtccgaccca cagacatggg 1440 gttggtgtcg aattcgactg ctctcgtagt ctgagcatga tttagtgatt cccctgtgcg 1500 tgaatccatg ctggtacttg caggttgtgg tgatgaaggc tgaacagccg caacccttcc 1560 acactatcct cgtcctctgt tcaggaactt tcctcttggc cttcttcgcc tctgtgtgca 1620 gtggctcctg aatgggacac ttcctcttgt atccagaaag gggattggac atcgcagaat 1680 atagcgtttg ctgttgccca attcttgagt gctccttgct ctggtttgtc caaccagagt 1740 ttaaatgagg atccctctcc tggattgcag aggaagatag tgggaattcc gcctttaatt 1800 tgaactggct ttccgtattt acagttggat tgccagtcct tctgggcccc catgaattcc 1860 ttaaagtgct ttaggtattg ggggttgacg tcatcaatga cgttatacca agcactgtta 1920 ctgtatactt ttgggctcag gtccaaatgc ccacacaggt aattatgtgg gcctaatgat 1980 ctggcccaaa ctgttttacc tatcctactt gggccttcta ttacaatact aatgggccta 2040 tccggccgcg cagcggcatc catgacattt tcagcggccc agtcgctgat aatgtcaggt 2100 acagcattga aagaagaaga agaaaatggg gaagaatata cagaaggctg aggagaaaaa 2160 attctatcta aattagcaac taaattatga tattgaaata aatatttttc agggagtttt 2220 tccctgatta tttgcaacgc agcttcttta gaatctgcgt ttagagcctc tgcggctgcg 2280 tcgttagcag tctgctgacc tcctctagca gatctgccgt cgacctggaa ttcaccccag 2340 gtgagggtat ccccgtcctt gtcaacgtag gacttgacat cggacgagga tttagctccc 2400 tggatgttgg ggtgaaagtg attcgacctt gagggtgaga caaggtcgaa gaatctgcta 2460 tttgtgcaga cgaatttacc ttcgaactgc accagcacat ggaggtgagg ttccccatcc 2520 tcgtgcagtt ctttggcgat gtgtatgtat tttttgttgg ttggggtttg gatatttagg 2580 agttgggaga ggcagtcctc ttttgagaga gaacagcgtg ggtaagtaat aaaatagttt 2640 ttggcctgaa ttttaaaacg tttgggagga gccatttgga gacacgcata agttcaaatg 2700 aattggagac tggagacaat atatagtatg tctccaaatg gcatttcggt aatttagaag 2760 atccttttag ctttaattca aattccgaca tttctgggac caccaaaagg cgggcaccgt 2820 attaatatt 2829 //