ID HQ333140; SV 1; circular; genomic DNA; STD; VRL; 2827 BP. XX AC HQ333140; XX DT 30-MAR-2011 (Rel. 108, Created) DT 01-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Sweet potato leaf curl virus isolate US:MS:4B-14, complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2827 RX DOI; 10.1007/s00705-011-0930-2. RX PUBMED; 21302123. RA Zhang S.C., Ling K.S.; RT "Genetic diversity of sweet potato begomoviruses in the United States and RT identification of a natural recombinant between sweet potato leaf curl RT virus and sweet potato leaf curl Georgia virus"; RL Arch. Virol. 156(6):955-968(2011). XX RN [2] RP 1-2827 RA Zhang S., Ling K.-S.; RT ; RL Submitted (30-SEP-2010) to the INSDC. RL U.S. Vegetable Laboratory, United States Department of Agriculture, RL Agricultural Research Service, 2700 Savannah Highway, Charleston, SC 29414, RL USA XX DR MD5; 53f582a4432ea9d07f7b4d5cca12cc56. XX FH Key Location/Qualifiers FH FT source 1..2827 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea batatas" FT /isolate="US:MS:4B-14" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="2007" FT /db_xref="taxon:100755" FT gene 101..469 FT /gene="V2" FT CDS 101..469 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:F2X5G8" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:F2X5G8" FT /protein_id="AEA08471.1" FT /translation="MFRPWRPSMAELWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEP FT GTLGFELCSELIRIFRVRQYDRANSRFAEISSVWGETGKTEAELRDSYRALHWECCPNC FT CPKLCPGFKRRPDEEKEG" FT gene 294..1058 FT /gene="V1" FT CDS 294..1058 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:F2X5G9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F2X5G9" FT /protein_id="AEA08470.1" FT /translation="MTGRIRVSPRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQVFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1074..1508) FT /gene="Ren" FT CDS complement(1074..1508) FT /codon_start=1 FT /gene="Ren" FT /product="replication enhancer protein" FT /note="C3" FT /db_xref="GOA:F2X5G4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F2X5G4" FT /protein_id="AEA08466.1" FT /translation="MDSRTGESLSHAQTTRAVEFDTNPMSVGRTAPFHLRMMYVHESTQ FT GRTILKFQLRVNYKERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELAN FT IGFFSLVNLVFVIKYLPRVCSWIDEVDTVDCNDDVKVLLY" FT gene complement(1225..1671) FT /gene="Trap" FT CDS complement(1225..1671) FT /codon_start=1 FT /gene="Trap" FT /product="trans-activating protein" FT /note="TrAP; C2" FT /db_xref="GOA:F2X5G5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F2X5G5" FT /protein_id="AEA08468.1" FT /translation="MSNLPSGIKRKCPIQEPLHAEAKKSKRKVPETRTRIVWKGCGCSA FT FITQTCKYQHGFTHRGITKSCSDYESSRIRHQPHVCGSDCTVPSQNDVCPREHTGENHP FT QIPVEGQLQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP" FT gene complement(1580..2674) FT /gene="Rep" FT CDS complement(1580..2674) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /note="C1" FT /db_xref="GOA:F2X5G6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F2X5G6" FT /protein_id="AEA08467.1" FT /translation="MAPPKRFRISSKNYFITYPRCSLSKEDCLSQLLNIQTPTNKKYIH FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFH FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKSWATANAIFCDVQSPF FT WNQEEVSHSGTTARGGEEEQEESS" FT gene complement(2260..2517) FT /gene="C4" FT CDS complement(2260..2517) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3Y554" FT /protein_id="AEA08469.1" FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFTPTSRELNPR FT PMSSPTLTRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL" XX SQ Sequence 2827 BP; 737 A; 597 C; 686 G; 807 T; 0 other; accggtgccc gccgcgccct ttaaaagtgg gccccacaag gggaccacgc gtcttttccg 60 tactctcttt aatgatgaca ttgctttata aggaccaatc atgtttcgcc cttggcgccc 120 aagtatggct gaattgtggg accctttgca gaacccactc ccagatactt tatacggttt 180 taggtgtatg ctatccgtaa aatacttgca aagtattttg aagaaatacg agccaggaac 240 cttagggttc gagctctgtt cggagttaat ccgtatattc agagtcaggc agtatgacag 300 ggcgaattcg cgtttcgccg agatttcatc cgtatggggg gagaccggta agacggaggc 360 tgaacttcga gacagctatc gtgccctaca ctgggaatgc tgtcccaatt gctgcccgaa 420 gctatgtccc ggtttcaaga ggcgtccgga tgaagagaag gaggggtgac cgcatcccga 480 agggatgtgt gggtccctgt aaggtccagg actatgagtt caagatggac gttccccaca 540 cgggaacgtt tgtctgtgtc tcggatttta caaggggtac tgggcttacc catcgcctgg 600 gtaagcgtgt ttgtgtgaag tccatgggta tagatgggaa ggtctggatg gatgataatg 660 tggccaagag agatcacacc aatatcatca cgtattggtt gattcgtgac agaaggccca 720 ataaggatcc gctgaacttt ggccaagtct tcactatgta tgacaatgag cccactactg 780 ctaagatccg aatggatctg agggatagaa tgcaggtctt gaagaagttt tctgttacag 840 tttcaggagg cccatacagt cacaaggagc aggctttggt tagaaagttt tttaagggtt 900 tgtataacca tgttacttac aatcacaagg aggaagctaa gtacgagaat catttagaaa 960 atgctttgat gctgtattct gctagtagtc atgctagtaa tcctgtatat cagaccctgc 1020 gttgcagggc ttatttctat gattcgcaca ataattaata aaattatatt ttattaatag 1080 agtaatacct ttacatcatc attacaatct accgtatcta cttcatctat ccaagaacaa 1140 actcttggaa gatatttaat aacaaaaact aaattaacta aactaaaaaa ccctatgtta 1200 gctaattcat tacatatgcg ccatttaagg cgttccaaaa taccagtcca actgtgaata 1260 gcaccagtta gacgggtcgt caagatccgg aattggagga agatcttgtg gaatcccagt 1320 tgcctccttt ccttgtagtt gaccctcaac tggaatttga ggatggttct cccctgtgtg 1380 ctctcgtgga catacatcat tctgagatgg aacggtgcag tccgacccac agacatgggg 1440 ttggtgtcga attcgactgc tctcgtagtc tgagcatgac ttagtgattc ccctgtgcgt 1500 gaatccatgc tggtacttgc aggtttgggt gatgaaggct gaacagccgc agcccttcca 1560 cactatcctt gtccttgttt caggaacttt cctcttgctc ttcttcgcct ccgcgtgcag 1620 tggttcctga atgggacact tcctcttgat tccagaaggg agattggaca tcgcagaata 1680 tagcgtttgc tgttgcccaa ctcttgagtg ctccttgctc tggtttatct aaccagagtt 1740 taaatgaaga gccctctcct ggattgcaga ggaagatagt gggaattcca cctttaattt 1800 gaactggctt tccgtatttg cagttggact gccagtcctt ctgggccccc atgaattcct 1860 taaagtgctt taggtattgg gggttgacgt catcaatgac gttataccaa gcactgttgc 1920 tgtacacttt agggcttaga tctaaatgcc cacacaaata attgtgaggg cccaaagacc 1980 tggcccatac tgttttgcct attctgcttg ggccttcaat aacaatggat atgggtctat 2040 ccggccgcgc agcggaatcc atgacatttt cagcggccca gtcgctgata atgtcaggaa 2100 cggcattgaa agaagatgaa gaaaaaggtg aagaatatac agaaggtgga ggagaaaaaa 2160 tcctatctaa attagaaact aaattatgaa attgaaataa atatttttca gggagtttct 2220 ccctgattat ttgcaacgca gcttctttag aacctgcgtt tagagcctct gcggctgcgt 2280 cgttagcagt ctgctgacct cctctagcag atctgccgtc gacctggaat tcaccccagg 2340 tgagggtatc cccgtccttg tcaacgtagg acttgacatc ggacgaggat ttagctccct 2400 ggatgttggg gtgaaagtga ttcgaccttg tgggtgagac aaggtcgaag aatctgctat 2460 ttgtgcagac gaatttacct tcgaactgca ccagcacatg gaggtgaggt tccccatcct 2520 cgtgcagttc tttggcgatg tgtatatatt ttttgtttgt tggggtttgg atgttaagta 2580 gttgggagag gcagtcctct ttagagagag aacagcgtgg atacgtaata aaatagtttt 2640 ttgaagaaat tctaaaacgt ttgggcggag ccatttggtg acactcagac tttcaaatga 2700 attggtgact ggtgacaatt tatactatgt caccaaatgg cattttggta atttagaaga 2760 tccttttagc tttaattcaa attccgacaa atctgggacc acaaaaggcg ggcaccgtat 2820 taatatt 2827 //