ID   HQ328803; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   HQ328803;
XX
DT   16-DEC-2010 (Rel. 107, Created)
DT   18-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Papaya ringspot virus isolate HC_ProCOLVC29 helper-component protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RX   DOI; 10.1016/j.virusres.2011.04.011.
RX   PUBMED; 21549774.
RA   Olarte Castillo X.A., Fermin G., Tabima J., Rojas Y., Tennant P.F.,
RA   Fuchs M., Sierra R., Bernal A.J., Restrepo S.;
RT   "Phylogeography and molecular epidemiology of Papaya ringspot virus";
RL   Virus Res. 159(2):132-140(2011).
XX
RN   [2]
RP   1-1371
RA   Olarte X.A., Rojas Y., Tennant P., Fuchs M., Sierra R., Bernal A.J.,
RA   Fermin G., Restrepo S.;
RT   ;
RL   Submitted (27-AUG-2010) to the INSDC.
RL   Biological Sciences, Universidad de los Andes, Carrera 1a No 18A 10,
RL   Bogota, Bogota 4976, Colombia
XX
DR   MD5; 8d9d11e644644be9bffae4bb1186b251.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="HC_ProCOLVC29"
FT                   /mol_type="genomic RNA"
FT                   /country="Colombia:Valle del Cauca"
FT                   /collection_date="Apr-2009"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /product="helper-component protein"
FT                   /note="HC-Pro"
FT                   /db_xref="GOA:E7DSL8"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:E7DSL8"
FT                   /protein_id="ADR83564.1"
FT                   /translation="NDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALVTII
FT                   LFPCHKITCNTCMSKVKGRVIDEVGEDLNCELERLRETLSSYGGSFGHVSTLLDQVNRV
FT                   LNARNTNDGAFKEIAKKIDAKKESPWTHMTAINNTLIKGSQATGYEFERASDSLLEIVR
FT                   WHLKRTESIKAGSIESFRNKRSGKAHFNLALACDNQLDRNGNFLWGERQYHAKRFFANY
FT                   FEKIDHSKGYEYYSQRQNPNGVRKIAIGNLVFSTNLERFRQQMVEHYIDQGPITRECIA
FT                   LRNNNYVHVCSCVTLDDGTPATSELKTPTKNHIVLGNSGDPKYVDLPTLESESMYIAKK
FT                   GYCYMNIFLAMLINIPENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLIIFHPDAA
FT                   NAELPRILVDHRQKTMHVIDSFGSVDSGYHILKANTVNQLIQFAREPLDSEMKHYIVG"
XX
SQ   Sequence 1371 BP; 437 A; 255 C; 310 G; 369 T; 0 other;
     aatgacgtgg ctgaaaaatt ctggctcggt tttaataggg cttttctacg acatagaaaa        60
     ccaacggatc acacttgcac gtctgacatg gatgttacaa tgtgtgggga ggtagcagct       120
     cttgtaacta taatcctgtt tccgtgccac aaaataactt gcaacacttg catgagcaaa       180
     gtaaagggaa gagtgattga cgaagttggt gaggatttga attgtgagct tgaacgtcta       240
     cgtgaaactc tttcatcata tggagggtca ttcggacatg tctcaacatt acttgaccaa       300
     gtaaatagag ttttaaatgc gcggaacacg aacgatggag cttttaaaga gattgctaag       360
     aagattgatg caaagaaaga gagtccttgg actcacatga cagccatcaa caacacgctc       420
     atcaagggtt cgcaagcaac tggctatgaa tttgaaagag cgtctgatag tcttctagaa       480
     atcgtgagat ggcatctcaa aagaacagaa tcaataaaag ctggtagcat tgaaagtttc       540
     agaaataagc gttctggtaa agctcacttc aacttagctc ttgcgtgtga taatcagttg       600
     gacagaaatg gtaatttctt atggggtgaa aggcaatatc acgctaaaag attctttgcc       660
     aactattttg agaagattga tcatagtaag ggttatgagt actatagcca acgccaaaac       720
     ccaaatggcg tcaggaaaat tgccattggc aatttagtgt tttcaacaaa tttagagaga       780
     tttcggcagc aaatggttga acactacatt gatcaaggac caattactcg tgagtgcatc       840
     gcattgcgca ataacaatta tgtccacgta tgcagctgcg taactttaga tgatggaact       900
     ccagcaacaa gtgagttaaa gactcctacc aagaatcaca tcgttcttgg taattctggt       960
     gatcctaagt acgttgacct gccgactctt gagtctgaat cgatgtacat agccaagaag      1020
     ggttattgct acatgaacat ctttttagcg atgctcataa atatacctga gaatgaagca      1080
     aaggacttca cgaagagggt tcgtgacctt gtgggttcaa aacttggaga atggccaacg      1140
     atgttagatg ttgcgacatg cgcaaatcag ttgataatct ttcatcctga tgcagccaac      1200
     gcagaattgc cacgaattct agtggaccac cgacagaaaa caatgcatgt cattgattct      1260
     tttgggtccg ttgattctgg atatcatata ttgaaggcaa acacagttaa tcagttgatc      1320
     caattcgcta gggaaccact tgatagtgaa atgaagcact acattgtcgg c               1371
//