ID HQ324250; SV 1; linear; genomic RNA; STD; VRL; 7560 BP. XX AC HQ324250; XX DT 19-AUG-2012 (Rel. 113, Created) DT 19-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Indian citrus ringspot virus isolate Pune, complete genome. XX KW . XX OS Indian citrus ringspot virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Mandarivirus. XX RN [1] RP 1-7560 RA Prabha K, Baranwal V.K.; RT "Genome sequencing and computational analysis of an isolate of Indian RT citrus ringspot virus infecting sweet orange in India"; RL Unpublished. XX RN [2] RP 1-7560 RA Prabha K, Baranwal V.K.; RT ; RL Submitted (05-AUG-2010) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa, New Delhi, RL Delhi 110012, India XX DR MD5; 63b673a16539e8a22ecf3f1cc58975da. XX FH Key Location/Qualifiers FH FT source 1..7560 FT /organism="Indian citrus ringspot virus" FT /host="sweet orange" FT /isolate="Pune" FT /mol_type="genomic RNA" FT /country="India" FT /db_xref="taxon:104664" FT CDS 79..5055 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; encodes methyltransferase, helicase and GDD FT domains typical of replicases of several RNA viruses" FT /db_xref="GOA:J7EPC0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:J7EPC0" FT /protein_id="AEK87110.1" FT /translation="MATIRGAIDRITDTTVRTTLQEEACRQIRTELKNVEHVNRYAIPP FT DAADALEHLGIGTNPFSVKLHTHGACKAIENQLLYVVGTLLPKERVTMLFLKKSKLNFM FT KRCPKFQDIFLNQHIEPRDVSRYCDFNVQSTSTSIPTHTAYISDTLHFMDRKDLVRLFI FT NSPNLDTLYATIVLPVEAAYRQPSRYPDLYQINYDFDGFQYIPGGHGGGAYHHEFNHLE FT WLDVGHIHWRGPDNKDVQLTITAQMIESLGANHLFCFRRGNLRTPRVRTFGRDTQVLLP FT KIFRPVDKNFNRAIPLTLANKMLLYAKSINTVTFRDVVAKTRQLMKDKELETYTGADLL FT HMANYFFVVGALSGVNSYDQMLGLSAWEACTMALKNTVTNLWERITGKREFGKLLEALE FT WETFTYSRQVTRKYVGGTPARLPLPDIADQEEIFAQQEALDALTSGATKITTHHLMSAA FT ARRSTEGPTMPTPSTRVPPTQSPKHAIDEVASRALVTKLQKNKRVYIQDDGPEYIMGHM FT AEVPAWYLEQDETTTRPRNRCAWFFGPPTYRYGHNDIEYHTTEYYPWVERIGNIFGKFD FT TCLAQTYDQGARIGYHADDEDCYDKDVTVATVNLTGNATFSLKTATGTRTWKLKPGDFI FT VLKSGAQGCTKHAISDCTTNRTSLTFRWQARPCPSQLRRVVNLGNVNNPKGKSKVQQWT FT PKTGNSDSPRLTQTPNNPTPKDVPVVSPKLADATAPTIRAVPENGAHTNMACVELTDLP FT ETTTTHRPGKEPINDLTDSEPETESEQTENLVLNRFIQDLPTTSTRAWASETDSICSFQ FT AEALGPSSVEALPWHEHLELINSLGFTGLERQHGPDNNLIWPITHYRTLPKSKSIEAPT FT DLVELLDTIDRHPTDVPYSKTRASAFGSDVKNLRIGALVKNQDKQWRASLALLCVENEH FT VLPTTVIHGAGGSGKSHLLQQWVSSTERGNVVVILPTIELLRDWLNKCPTAPKDSFKTF FT EKALVQNSAPVVIMDDYSKLPPGYIEAYVALKGQCKLLVLTGDPRQSHYHEENPEALIS FT TLDPATDYFSKYCTYNINATHRNATTFANALGVYSERKLPVSVTCSSYQKSGWPTLVPS FT ILKKTALNDMGQRSLTYAGCQGLTTPKVQIVLDNATPLCSEQVMYTALSRVVDQIHFFN FT TGPNHSDYWEKMNATPFLKTFIDHTREENLKEHQPAEPTVREHTPATHFPPANEALALE FT PWVEPLTDKHSRELHHKALGHSNCVQTDNPVVQLFPHQQAKDETLFWKTIDARIKITTP FT EENVRNFNMASDIGDILFLNYKEAMCLPADPIPFQQSLWDSCQAEVQQTYLNKPLAALA FT NAAQRQDPDFDSNKIQLFLKSQWVKKVEKLGCLKIKPGQTIASFMQQTVMLYGTMARYM FT RRIRTSLSPSHIMINCETNPTQISSWVRENWDFSGQSHENDFEAFDQSQDANMLQFELI FT KAKFHSIPEEIVAGYKHLKCHAHIFLGTIAIMRLSGEGPTFDANTECSIAYNHTRYFVP FT KGCAQLYAGDDAACAAPLSEKPSFQHISPELSLKSKAKIRSQTKGDYATFCGWLITPKG FT FIKNPTQLYASWLLAKHNKDLQDVARNYALDLRIAYQLKDELYELLSPEELDHHQLLVR FT EMVKHKMGHLLNLPEGFKQT" FT CDS 5063..5740 FT /codon_start=1 FT /product="25 kDa triple gene block protein" FT /db_xref="GOA:J7EQA9" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:J7EQA9" FT /protein_id="AEK87111.1" FT /translation="MDFAELLESKAFTRTRLPLSKPIVVHAVAGAGKTLLLENYARINP FT AARIYTPIAQQSNSLLLSPFTQSLEQAEIVDEYPLCTIHPGVEYVLADPIQYLGSKDLL FT KPHYICPTTHRFGHSTAEFLTSLGIETYAHKPDRLTIANIFKTEPHGQVIACDLDTQQL FT AARHSLDYLRPCQSIGKTFKDTTILISHELNRDTLTKEIYIALTRHTNSVTILMPDAPS FT TSS" FT CDS 5718..6047 FT /codon_start=1 FT /product="12 kDa triple gene block protein" FT /db_xref="GOA:J7EPZ7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:J7EPZ7" FT /protein_id="AEK87112.1" FT /translation="MPLQPPPDHTWAVRIIALGLAVTALIFTSTRDTSRHVGDPSHSLP FT FGGNYRDGSKVVHYNSPRSSKPPNHTPYLLFAPIGIILLIHALHRLGNSAHICRCTHCI FT PHSQT" FT CDS 5974..6156 FT /codon_start=1 FT /product="6.4 kDa triple gene block protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:J7ENW2" FT /protein_id="AEK87113.1" FT /translation="MHYIDWVILLTFAAALIVYLTPKPEPCIITVSGASATVSNCPNPE FT LLTDLVKALKPAKPV" FT CDS 6179..7156 FT /codon_start=1 FT /product="capsid protein" FT /note="CP" FT /db_xref="GOA:J7EQ95" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:J7EQ95" FT /protein_id="AEK87114.1" FT /translation="MSFDYTDPTFRNYPFPHYCDFDRHQHCDHDLHTNPPPTELPSRKS FT KFMATSENKGKQPLHPPPTEDFPKPPPPPSSTQATPTPPDQTKALEPIEKRIIHAFHAE FT PKTHTNGEAPPAFNPNNMNAVPLNLLNINLKYSPVTNSIANPKQTEAIGKAWVRILQID FT PANVFLYAIDLARACADAGSSPEADIIGANEDLNPVVERNALAGVVRDFCPLRAFCAYY FT SRVVWNLMIKADQPPANWMKSGIDEGAKFAAFDFFHGVLSPASLYVPLERHPTAAERIA FT NQAMFAVKIANAPGNGSELTMDHVAFTKGRITADSKPRPTPFNT" FT CDS 6856..7524 FT /codon_start=1 FT /product="23 kDa nucleic acid binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:J7EPC2" FT /protein_id="AEK87115.1" FT /translation="MEPHDQSGSTTGQLDEIRDRRGSQIRSVRLLPWRPFARFPVCSSG FT TSPYSRGTHSQPSHVRCQNCERARQWFRAHDGPRCLHQRPDYSRLQAPPDPFQHLNSFE FT PILLAALSVLRPLPRDIQITIISCACDYFHSVRCASSRYLGSSRSAVKRRAARLNYCYK FT CGHPLYLNKPHTCRPGRLCSASIFERLALLRAGPIRSLTENPINARAAHFLAHELLDPR FT " XX SQ Sequence 7560 BP; 2115 A; 2428 C; 1488 G; 1529 T; 0 other; gaaaagcaaa cataaccata cacactcaaa atattgacta ttctctccgc atcaacagca 60 cagctaagaa ccggggacat ggccactatt aggggtgcca tcgatcgtat cacagacacc 120 accgtacgca cgacactaca ggaggaggct tgcagacaaa tccgtaccga acttaagaac 180 gtagaacatg ttaataggta cgccatcccg ccagatgccg cagacgccct agaacatctt 240 ggcattggca ccaacccctt ctcggtcaaa ttgcatacac acggtgcctg taaagcgatc 300 gaaaaccagc tactctacgt agttggtact ttgctaccaa aagaaagagt taccatgctc 360 tttcttaaga aatctaagct caacttcatg aagagatgcc cgaagttcca agacatcttc 420 ctaaatcagc acatagaacc tagggacgtc tcaagatact gcgatttcaa cgtgcaatcc 480 acatccacta gcattcctac ccatacggca tacatcagcg acacactaca ttttatggat 540 aggaaggact tagtaaggct cttcatcaac agtcctaact tagacaccct ctatgccact 600 atcgtactac ccgtggaggc cgcataccgc caaccgagtc ggtatcccga cctatatcaa 660 atcaactatg acttcgatgg tttccagtac attcctggtg gccatggagg tggtgcctac 720 caccacgaat tcaaccacct cgagtggctg gacgtaggcc acatacactg gcgcggacca 780 gacaataagg acgttcaact tacaataacc gcgcagatga ttgaaagcct tggagcaaac 840 cacctgtttt gcttccggag aggcaactta cgcacaccca gagttaggac ctttggccga 900 gacacacaag ttctgctccc taaaatattc cgcccggtcg ataaaaactt caacagggcc 960 ataccactca ctctggctaa taaaatgcta ctctacgcca aatcaatcaa cacggtcaca 1020 ttccgtgatg ttgtagcaaa aacccgccag ctcatgaaag acaaggagct ggagacatac 1080 accggcgccg acctacttca tatggccaac tacttcttcg tcgtcggcgc cctatctgga 1140 gtcaactctt acgaccaaat gctggggctc tcagcatggg aagcatgcac catggccctc 1200 aaaaacacag ttaccaacct ctgggagcgc atcactggaa aaagagagtt cggaaagctt 1260 ctcgaggcac tcgagtggga gaccttcacc tactctcgcc aagtaacccg gaaatacgta 1320 ggcggcacgc ccgcacgact tccactgccc gacatcgctg atcaagaaga gattttcgct 1380 caacaggagg ccctagacgc actcacgtca ggcgcgacta agatcaccac acaccacttg 1440 atgagtgcgg cagcccgacg cagcaccgag ggccccacaa tgcccacccc atccacccga 1500 gttcccccta ctcaaagtcc aaaacacgcc atcgatgagg tggcatcacg cgctctcgta 1560 acaaaactac aaaagaacaa gcgcgtctac atacaagatg acggtccaga atatatcatg 1620 ggccacatgg ctgaagtacc tgcctggtac ctagaacaag atgaaaccac tacgagacca 1680 cgcaaccgtt gcgcctggtt cttcggacca cccacctacc ggtatggaca taatgacatc 1740 gagtaccaca caacagaata ttacccgtgg gtggaacgca tcggcaacat atttggaaag 1800 ttcgacacat gccttgcgca aacttatgac cagggcgccc ggataggcta ccacgctgac 1860 gacgaagact gctatgacaa agacgtaacc gtggccacgg tgaaccttac aggtaatgcc 1920 accttttctc tcaagacagc tacgggcacc cgtacatgga aattgaagcc gggcgatttc 1980 atcgttctca aatccggcgc tcaagggtgc accaaacatg ccatcagtga ctgcacaacc 2040 aaccgcactt ccttaacatt tagatggcag gctcgaccat gtccgagcca gctacgcaga 2100 gtggtcaacc ttggaaacgt caacaacccc aagggcaaat ctaaagtgca acaatggacc 2160 ccaaaaaccg gcaactcaga tagcccaaga ctgacccaga ccccaaataa cccaacaccc 2220 aaggatgtgc cggtcgtaag cccaaaactc gctgacgcta ccgcaccgac gattagggcc 2280 gtgcccgaaa acggtgccca caccaacatg gcgtgtgtag agcttacgga cctgcccgaa 2340 accaccacta cccatcgccc gggcaaagag ccaattaacg acctcacaga ctcagaacct 2400 gagactgagt ccgaacaaac tgaaaacctt gtactcaacc gcttcataca ggacttgccc 2460 accacctcta ctcgcgcgtg ggcctctgaa accgactcca tctgcagctt ccaggccgag 2520 gctcttggtc catcttctgt cgaagcccta ccatggcatg aacatctcga gttaataaac 2580 tctctaggct tcactggtct tgaacgccaa cacggcccag acaacaatct catctggccc 2640 attacccact accgcacact cccaaaatcc aaaagcatcg aggcgcccac tgacctggtt 2700 gaactcctcg acaccattga ccgacatccc accgacgtcc cttactccaa gacgcgagcg 2760 tcagccttcg gctctgacgt taagaacctt cgtatcggag cgttggtcaa gaaccaggat 2820 aaacaatgga gggcgtctct cgcactcctt tgtgtggaaa acgaacacgt cctgcccacc 2880 actgtcatac acggcgcagg tggttctgga aaatcccacc tcctccaaca atgggtctcc 2940 tctactgaac gcggcaacgt cgtcgtcatt cttccgacga ttgaactgct tcgagattgg 3000 ctcaacaagt gccccactgc accgaaagac agctttaaga ccttcgaaaa agctcttgtg 3060 caaaacagcg cccccgtagt cataatggac gactactcca aactgccgcc cggctatatc 3120 gaagcttacg tagcactcaa gggccaatgc aagctgctcg tcctcaccgg agacccacgc 3180 caaagccact atcatgaaga aaacccggaa gctctcatct cgaccctaga ccctgcaact 3240 gattactttt ccaaatactg tacctacaat atcaacgcca cacaccgaaa cgccaccacc 3300 ttcgcaaacg ccctcggcgt ctactctgag agaaagttgc cagtgtcggt aacttgttcg 3360 tcttatcaga agagcgggtg gcccacactc gtcccatcaa tcctcaagaa aaccgcactc 3420 aatgatatgg gacaacgctc cttgacctat gccggctgtc agggcctcac aactcctaaa 3480 gttcaaattg tactggacaa cgccactcca ctctgctcag agcaggtgat gtacaccgct 3540 ctctctcgtg tcgtcgacca gatacacttc tttaacacag gcccaaacca ctcagactat 3600 tgggaaaaga tgaacgccac ccctttcctc aagaccttca tagaccacac ccgcgaagag 3660 aacctcaaag aacaccagcc cgcagagccc accgtcagag aacacacccc cgccacacac 3720 tttccaccag ccaacgaagc tctagcactt gaaccctggg ttgaacccct cacagacaaa 3780 cactcacgag aattgcacca caaagcgctg ggtcacagca actgcgtgca aaccgataac 3840 ccagtggtac aactcttccc ccaccaacaa gccaaggacg aaaccctctt ctggaaaact 3900 atcgacgctc gaatcaaaat cacgacaccg gaagagaacg tccgcaactt caacatggcc 3960 tccgacatcg gagacattct tttcctgaac tacaaagaag ccatgtgcct acctgccgac 4020 cccatcccct tccaacagtc tctttgggac agttgccagg ctgaagtgca acagacttac 4080 cttaataaac ctcttgcggc acttgccaac gctgcccagc ggcaagatcc agacttcgac 4140 tccaacaaga ttcaattatt cctaaagtct caatgggtca agaaggtgga aaaacttggc 4200 tgcctcaaga ttaaaccagg acagaccatc gcctcattca tgcaacaaac ggtcatgctc 4260 tacggcacta tggcgcgata catgcgcagg atccgtacct ctcttagtcc ctcacacatc 4320 atgataaact gcgagaccaa ccctacccaa ataagctctt gggtacgaga gaattgggac 4380 ttttccggac aaagccacga gaacgatttc gaggcttttg atcaatcaca ggacgcgaac 4440 atgctgcaat tcgagctgat caaggcaaaa ttccactcca ttcctgagga gatagtcgct 4500 ggctacaaac acctaaaatg ccatgcacac atctttctag gcaccatcgc tattatgcgc 4560 ctgtccggag agggccccac ttttgacgca aacactgagt gctccatcgc ttataaccac 4620 accaggtact tcgtccctaa gggttgtgct caactttacg ctggcgacga tgcggcctgt 4680 gctgctccac tctctgagaa acccagcttc caacacatct cacctgagct gagcttgaaa 4740 tcaaaagcta aaatccgaag ccagactaaa ggagactatg ccactttctg tggttggcta 4800 atcactccca aaggtttcat caagaaccca actcagctct atgcctcctg gctactggcc 4860 aaacacaaca aagatctaca ggacgttgcg cgcaattacg cccttgacct ccggatagca 4920 taccaactca aagacgaact ttacgagctg ctatcccccg aggagctaga tcaccaccaa 4980 ctcttagtcc gcgagatggt caaacacaaa atgggacacc tcttaaacct ccctgagggg 5040 tttaaacaaa cctaatcccg atatggactt cgccgagctc ctcgaatcca aagcttttac 5100 tcgcactcga ctgcccctct cgaaacccat tgtcgtacat gctgtggccg gcgccggtaa 5160 gaccttactc ttagagaatt acgccagaat caaccctgcc gcccgaattt acactccaat 5220 tgcccaacaa tcgaattcac tactactctc tcccttcaca cagtcccttg aacaagcaga 5280 aattgtagac gaatacccgc tctgcaccat tcatcctgga gtagagtacg tcctcgcaga 5340 tcccatccaa tacttaggtt ccaaagacct cctgaagccg cattacatct gccccaccac 5400 acatcgcttc ggtcattcca cagcagaatt cctaacctcc ttgggcatcg aaacatacgc 5460 gcacaaaccc gaccgtctca caattgccaa catcttcaag acggaacccc acggccaggt 5520 cattgcctgc gatttagaca cacagcaact tgccgcgcga cactcccttg actatctacg 5580 cccttgccag agcatcggca aaaccttcaa agacaccaca atcctgatct cacacgaact 5640 gaacagagat actctgacaa aagagatcta cattgcccta accagacaca ccaacagcgt 5700 aaccattctt atgcccgatg ccccttcaac ctcctcctga ccatacctgg gctgttcgta 5760 ttatagcatt gggactcgcc gttactgccc tcatcttcac atccacaagg gacacgtcta 5820 gacacgtagg agacccatca cattctttac ctttcggcgg gaattatcgc gacgggagca 5880 aagtagtcca ctacaactca ccccgatcca gcaaacctcc aaatcacact ccatacctgt 5940 tgtttgctcc gattggcatc atattactaa tccatgcact acatcgactg ggtaattctg 6000 ctcacatttg ccgctgcact cattgtatac ctcactccca aacctgagcc gtgcataatc 6060 actgtgtctg gagcatcagc gactgtctcc aactgcccaa atcccgagct cttaacagac 6120 ttagtcaagg cactcaagcc cgccaaacca gtttaataaa ctaaaccaca ccgaactcat 6180 gagctttgac tacacagatc caaccttccg taattacccc ttcccgcact actgtgattt 6240 cgaccgccac caacactgcg accacgacct acacaccaat ccacctccaa ccgagctacc 6300 atcccgaaaa tccaaattca tggctaccag tgagaacaaa ggcaaacagc cgcttcaccc 6360 gcctcccacc gaagactttc caaaacctcc accaccaccg tcgagcaccc aggctactcc 6420 cacaccgccc gaccagacga aggctcttga acccattgag aaaagaatca tccacgcctt 6480 ccacgctgaa cccaaaaccc acaccaatgg agaagccccc ccagcattca atcccaataa 6540 catgaacgct gtgccactca acctactcaa catcaacttg aagtattcac cagtcaccaa 6600 ctccattgcg aacccgaaac agacagaagc tattggcaaa gcctgggtcc gtatcctgca 6660 aattgatcct gcgaacgtat tcctctacgc catcgacctc gcccgagctt gcgctgacgc 6720 tggaagctca cccgaagccg acattatcgg cgcgaacgaa gacctcaatc cagtggtcga 6780 gcgaaacgcc ctagctggtg ttgtccgaga cttctgccca ttgcgcgcct tttgcgctta 6840 ctactccagg gtggtatgga acctcatgat caaagcggat caaccaccgg ccaactggat 6900 gaaatcaggg atagacgagg gagccaaatt cgcagcgttc gacttcttcc atggcgtcct 6960 ttcgcccgct tccctgtatg ttcctctgga acgtcaccct acagccgcgg aacgcatagc 7020 caaccaagcc atgttcgctg tcaaaattgc gaacgcgccc ggcaatggtt cagagctcac 7080 gatggaccac gttgccttca ccaaaggccg gattacagca gactccaagc cccgcccgac 7140 ccctttcaac acttaaacag cttcgaaccc atactcctgg ccgccctgag tgttctacgg 7200 ccactacccc gagatatcca aattaccata atatcgtgtg cgtgtgacta tttccattct 7260 gtacgctgtg ccagtagtcg gtacttaggc tcaagccgtt ccgccgtcaa aaggcgggct 7320 gccaggctta attactgcta caagtgtggg caccctctct acttaaataa acctcacacc 7380 tgccgcccag gtcgtctttg ctccgcgtca atttttgaac gcttggctct actccgcgcg 7440 ggaccgatta ggtcattgac cgaaaatccc atcaacgcta gagctgcgca cttcctggcg 7500 cacgagctcc tcgaccctag atgaaactta aatattcagg ctttcagttt ccattttctg 7560 //