ID HQ316634; SV 1; linear; genomic RNA; STD; VRL; 2982 BP. XX AC HQ316634; XX DT 28-OCT-2010 (Rel. 106, Created) DT 28-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Cucumber mosaic virus isolate Mb 1a protein gene, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2982 RA Qin Z., Jin L., Chen J.; RT "Characterization and sequence analysis of a Cucumber mosaic virus isolate RT infecting Musa basjoo in China"; RL Unpublished. XX RN [2] RP 1-2982 RA Qin Z., Jin L., Chen J.; RT ; RL Submitted (27-SEP-2010) to the INSDC. RL Institute of Bioengineering, Zhejiang Sci-Tech University, Xiasha 2# Road, RL Hangzhou, Zhejiang 310018, China XX DR MD5; 03df27b78a0efff8084a40736b05e5a1. XX FH Key Location/Qualifiers FH FT source 1..2982 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Musa basjoo" FT /isolate="Mb" FT /serotype="II" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Aug-2008" FT /db_xref="taxon:12305" FT CDS 1..2982 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:E3VWL4" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E3VWL4" FT /protein_id="ADO85714.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMSMRKVILNDPQQFDGRQ FT PDFCTESAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCLAAKLNSTVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCAIYAGVMTYKIVGVPGMCPPELIRHCIWFPSLK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVVKTLFPTLRPREEKEFLVKLSTFVTFNEECSFDGGKEWDVISSAAFVAAQ FT AVADGNILAEEKAKKLADRLAVPVEDEVSAIPEVSPTPADQGTACGLETETSELDSLSA FT QTRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNSLESNLKFVFD FT TYFSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHD FT LFSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDMIVTANKKSAQDVRYALFKS FT TDSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLRAVRALCFGDSE FT QIAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRTKYSRW FT VSQSKVRKSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIASC FT IPLV" XX SQ Sequence 2982 BP; 760 A; 642 C; 696 G; 884 T; 0 other; atggcaacgt cctcattcaa catcaatgaa ctggtagcct cccacggcga taaaggacta 60 ctcgcgacag ccctcgttga taaaacagct catgaacagc tggaggagca acttcaacat 120 caacgtagag gccttaaggt ctacatccgt aatgttttgg atgtaaagga ctccgaagtc 180 attcggactc ggtatggtgg taagtacgac ctccatctca cccagcagga attagctccc 240 catggcctcg ctggtgccct ccgcttgtgt gaaactctcg attgtctaga ctttttccct 300 cgttcaggtc tgcggcagga cctcgtctta gacttcggag gaagttgggt cacacactat 360 cttcgcggac acaacgtaca ttgctgctcc ccatgtttgg gtattcgtga caagatgcgt 420 cacgctgaaa gattaatgag catgcgcaag gtcattttaa acgatccaca acagtttgat 480 ggccgccagc cggacttttg cactgagtct gcagctgaat gcaaagttca agcccacttt 540 gctatttcta tacacggagg atatgatatg ggctttagag gtttatgtga ggcaatgaac 600 gctcacggaa ctacgatttt aaaagggacg atgatgttcg acggtgctat gatgtttgac 660 gaccaaggct ttattcctga acttaaatgt cagtggcgaa aaatcaaatc cgccttttct 720 gaggaggagg atgccacttg tttagcagct aaactcaatt ccactgtatt ctcacgcgtg 780 cgcaacggaa aaaccttaat cgcattcgac ttcgttgaag aatccacgat gtcttatgtt 840 cacgattggg ataatataaa atcgtttatg acagatcaaa cgtactcttt caatggtatg 900 acctatggaa ttgagcgttg tgctatttac gctggcgtga tgacttacaa gattgttggt 960 gtgcctggga tgtgtccacc ggaactcatt cgacattgta tctggttccc ctctttgaag 1020 gactatgttg gtcttaagat tcccgcgtct gatgacttgg ttaaatggaa aacagtccgt 1080 attttactgt caacactacg tgagactgaa gaaattgcta tgcgttgtta taacgacaag 1140 aagaattgga tggatcaatt caagattatt ctcggtgttt tatcatcgaa gtcctccacg 1200 atcgttatca atggtatgtc tatgcaatcc ggtgaacgta ttgatctcaa tgattatcat 1260 tacatcgggt ttgctattct tcttcacacg aaattaaaat acgaacaact tgggaaaatg 1320 tacgatatgt ggaatgcttc ctttatttgg aagtggtttg cgtctatgtc tagaccattc 1380 cgtgttttct tttccactgt tgttaagact ttgtttccaa ctttgagacc gcgcgaggaa 1440 aaggagtttt tggtcaaact ttccactttc gtcaccttta acgaggagtg ctcttttgac 1500 ggagggaagg aatgggacgt gatatcatca gcggcttttg tagccgctca ggctgttgca 1560 gatggtaata ttttggccga ggagaaagct aagaaattag ctgatcgtct ggccgtgcct 1620 gttgaagacg aagtatctgc tattcctgag gtgtctccta cacctgctga tcagggcact 1680 gcttgtggac tggaaacaga aacatcggaa ctggattctc tgtctgccca aacacgttcc 1740 cccatcacac ggatcgctga aagagcgacc gctatgcttg aatattcagc ttatgagaaa 1800 caattgcacg ataccaccgt ttcaaatctt caacgaattt ggtgcatggc tggtggcgac 1860 aacaagagaa actctttaga gagtaatttg aaatttgtgt ttgacactta tttttctgtt 1920 gacgcccttg tgaatgttca ctttcctact gggaggtgga tgcatcctgt gcctgagggc 1980 gtggtatact ctgttggtta taatgagaag ggtctcggtc ctaaacttga cagtgagttg 2040 tacatagtta atggtgattg tgtgatttcg aacagtcatg acctgttttc gatcactaaa 2100 tctttgttag ctcccaccgg aaccatcagc caagtcgatg gtgtggctgg gtgcggaaaa 2160 accactgcta taaaatccat gtttaatcct tccacagata tgattgtcac agccaacaag 2220 aaatctgctc aagatgtgcg ttatgcgctg tttaaatcta ctgactccaa agaagcttgt 2280 gcttttgtta ggactgctga ttccatatta ctcaatgact gccctactgt gtctcgagtg 2340 cttgtggatg aagttgtttt gttgcacttt ggtcagttgt gcgctgtcat gtcgaaactt 2400 cgtgctgtca gagctttgtg ttttggagat tccgaacaga tagctttctc ctctcgtgac 2460 gcttcgttcg acatgcgttt ctctaagctt attccggatg agaccagtga tgcggacaca 2520 actttccgta gcccacaaga tgtagtacca cttgtgcgtt tgatggctac gaaggctcta 2580 ccgaaaggaa cccgtacgaa atactcaaga tgggtgtccc aatctaaagt gaggaagtct 2640 gttacttcgc gtgctgttgc tagtgtatct ctagttgaac tggaccccac cagattctat 2700 attacgatga cgcaagctga taaagcctca ctaatcacta gagctaagga actgaaccta 2760 cccaaggcat tctacactga taggataaag actgtccatg aatctcaagg tatttcagaa 2820 gatcatgtga ccctggttag gttgaagagt actaaatgtg acctgttcaa gaaattttcc 2880 tactgcttag ttgcagttac tcgacacaag gtcaccttcc gctatgagta ctgtggtgtg 2940 ttaggtgggg acctaatcgc tagttgtatt ccgttagtct ga 2982 //