ID HQ291260; SV 1; linear; genomic RNA; STD; VRL; 8219 BP. XX AC HQ291260; XX DT 11-APR-2011 (Rel. 108, Created) DT 11-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Sweet potato chlorotic stunt virus isolate m2-47 segment RNA2, complete DE sequence. XX KW . XX OS Sweet potato chlorotic stunt virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8219 RX DOI; 10.1016/j.virusres.2011.01.010. RX PUBMED; 21262288. RA Cuellar W.J., Cruzado R.K., Fuentes S., Untiveros M., Soto M., Kreuze J.F.; RT "Sequence characterization of a Peruvian isolate of Sweet potato chlorotic RT stunt virus: further variability and a model for p22 acquisition"; RL Virus Res. 157(1):111-115(2011). XX RN [2] RP 1-8219 RA Cuellar W.J., Cruzado R.K., Fuentes S., Untiveros M., Soto M., Kreuze J.F.; RT ; RL Submitted (23-SEP-2010) to the INSDC. RL Integrated Crop Management Division, International Potato Center (CIP), Av. RL La Molina 1895, Lima L12, Peru XX DR MD5; be0285c6c200d20b9710bac225dea9a0. DR EuropePMC; PMC3125117; 21262288. DR EuropePMC; PMC3650446; 23661487. DR EuropePMC; PMC4149548; 25170926. DR RFAM; RF01091; PK-SPCSV. XX CC GenBank Accession Numbers HQ291259, HQ291260 represent sequences CC from the 2 segments of Sweet potato chlorotic stunt virus isolate CC m2-47. XX FH Key Location/Qualifiers FH FT source 1..8219 FT /organism="Sweet potato chlorotic stunt virus" FT /segment="RNA2" FT /host="Ipomoea batatas" FT /strain="EA" FT /isolate="m2-47" FT /mol_type="genomic RNA" FT /country="Peru" FT /collection_date="1999" FT /db_xref="taxon:81931" FT CDS 91..240 FT /codon_start=1 FT /product="p6" FT /db_xref="UniProtKB/TrEMBL:Q8JJW5" FT /protein_id="AEA92659.1" FT /translation="MTQSIRESMGLCNPRTRISVTYWMQSDCPSYLLLFCVYKSKTQKY FT IFSP" FT CDS 556..714 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:F4ZUN6" FT /db_xref="UniProtKB/TrEMBL:F4ZUN6" FT /protein_id="AEA92660.1" FT /translation="MVCHIFKFGFSLYFSFLEYCLDYMLIVCFLLSAYSMFCDYLFSLS FT INLLNIF" FT CDS 986..2650 FT /codon_start=1 FT /product="hsp70h" FT /db_xref="GOA:F4ZUN7" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:F4ZUN7" FT /protein_id="AEA92661.1" FT /translation="MEAKAGLDFGTTFSTISAYVGGTMKVLRINGSEFIPTCLSVTATG FT DVVVGGAAQVLDSSQLPHCYFYDLKRWVGVDRLSFEEIKRKISPQYTVRLEGNDVLITG FT ISKGFSCTYTVKQLILLYVDTLVRLFSNVEKLKILSLNVSVPADYKTKQRMFMKSVCES FT LGFPLRRIINEPSAAAIYSISKHPGFDYFLVYDFGGGTFDTSLIAKDGKFVTVADTLGD FT SFLGGRDIDRAILSHIMRTNSLQKPLSADSLAAIKEEVNSTGRSNFNVLDVDGSIIFVN FT FSGEELDKIVSKFTAKSLKILKAIADRNKITSGALFLVGGSSLLRKVQLDVSNFAKSIG FT LTPIIDKDLRSAVSYGCSMMHAQEDSGSMVYIDCNSHPLMDVSLFANPRVIIRKPMSVP FT FSYKTTRKVDRHMMTAVNVYEGSSLFVLDNDWLVSANVNTQDFVDLGQELSYVYKYNVD FT GILDLFVRNESTGVESLLPNSFALTEKVKKLDLNLTQLSSVDELATVVSILSHFDSSFS FT SLLKLVNTPSIFETSAAKFGDLRSLYERLIFVNKNFS" FT CDS 2672..4228 FT /codon_start=1 FT /product="p60" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:F4ZUN8" FT /protein_id="AEA92662.1" FT /translation="MSQSIIDSDFVTETFRYAFKKTDVRDKLERLNEVMKDNLDQINRT FT KYSFNFQGQTYNLSSNYQVRNGVVHVNTEAPLEVLKLLSVYMYYVEPKYIDMSPYSPES FT LFGNPNYMKAVKMWKPYYDKSMNEYLNDRSEVGCLYTMDDIDKNYPTLSQTRKITLYRV FT CNSLGKLVDLKELSAGVLKAFEVKTSDVGQAVMTTTTNNALFGECVKVFKDFIVLNSTK FT AGKEKIEVNRKFLNSFLQCLSPKDELGNLGENPLLIAWFMREFTNRTKNSKGYKDNFKA FT VGDLSQPMLKFLKDVFLKDLSLDEDSLFITFPKNSVVEIVDQVIPLAKFHRNQALPKPM FT SNSCDLPRDVDELVSKTIAEYLGKFVKTDEDLLLDAFLFVLGRCTTNQKRWTSGFEIDF FT KILGERIKFDSKDLWYHLVNVVRTNHPRFRTNNLIRQWANNRGDRARAMFKICEYHPGL FT FGSIPRIDNHMRFDFFKLLNLRLMSESEKMSYYTLRLMTESKSNNSDKDFCKLVSWISV FT N" FT CDS 4210..4431 FT /codon_start=1 FT /product="p8" FT /db_xref="UniProtKB/TrEMBL:F4ZUN1" FT /protein_id="AEA92663.1" FT /translation="MDFSELIEKYGVERISSLTSRLLEIKRTGVGLVNLLLNLVNENFI FT HFDSNRSPCGFEKEDHDLILQIIPLLRI" FT CDS 4464..5237 FT /codon_start=1 FT /product="CP" FT /db_xref="GOA:F4ZUN2" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:F4ZUN2" FT /protein_id="AEA92664.1" FT /translation="MDTDKVNDDKNFDSDSDVGFGDRNVNDNLRRRSDTIDNENVNNVG FT RRDMELTSGILTSEQLALARLGKIQVYSNSPDIMSKSQEDEFKRHMESFLKQITGETTL FT SSEIFAGFYASLFQAWANQSTSEKNASNANLENMFMVDGKEYSWRTHSFINHMQSNMPD FT VKNAARKWARAHANDYKVLVGLGIVKPDYHLQAKQGVLPEYWHLATDFMRGNDMATTAD FT GLAATLMMKRNALCNKDNKNSIYNVTQLTGTGLHC" FT CDS 5240..7294 FT /codon_start=1 FT /product="mCP" FT /db_xref="UniProtKB/TrEMBL:F4ZUN3" FT /protein_id="AEA92665.1" FT /translation="MDILELEVDNIISTNYPDDESEIVTRAVGCKFNQDYSLPYKDGEQ FT VDFSIPHTSALRSKPVTLELYFHIGSGYVVYTCKPTDNFNQKIYESNLGSFFSSFRNLV FT TPRRPRGMNAFRFGYLREGNDCFIIVEGWRVVQISNANTIFGVSLRLSLDIGGVIFSKS FT DKLSANQIALDSCLECTRPDGLLKGAKPKSVNIFSETTQESVKVTPIGDIPLSVFNSVT FT NLNLKILRSGDDSTSIKDETQIDKDRTTMSNEEDKKKIFRIYYSNFLDNGFKNSLNYTI FT LWPQISCNGVDVNHQFWIGDREDMLEGGVHYIHTTSTNTIFFVHRKGNVSEYLKINEDQ FT SARILKTIPTELTFSIVKNPGSKYVVYVNGEKFLSTFLPNVGTKVQIGWEIKLYKDKVK FT SFEKSNLKTFEIVPRETQVKSDNELVTLRKYEFGTTDFNASGWVLEKKLGLRLKTIKHV FT NELFTDDKPPEKEEQVDKTDKQDKKTPEEKIDDTVVVDKTEDAKENLEEFALKAVVYQP FT LSRLEDEKIFNNMIKYYESKGLTQRQAELLIYQMGVSFCTSVNSCANSNLHLIVSKPDG FT SLLKVSKSDHVMRMQMLCKKYCNVERTLLRNRSDKIFRLLKAKVLVLPLKHARVRGIKP FT EMAHMACDFMDYTTIPLSDEEVLALNSMQRFVLMRNKHRRSIVNVNQLF" FT CDS 7299..8027 FT /codon_start=1 FT /product="p28" FT /db_xref="UniProtKB/TrEMBL:F4ZUN4" FT /protein_id="AEA92666.1" FT /translation="MSGWDDIHIQQNYVSSSVRNDDDIAKICARTFNRAVNLLTDYPQH FT TIPELRESRFELGCIRSLCENDDFNINLGADNNNLFQGLNKLGVRADSLRVNSERFFPS FT ISSKVMTNVIDSISSVMEFVIDLNHSGFSTLWVGEIMTIYDVNSFDKLVDAIYRFLLYT FT YNFPEEVQFHMTLNLFNDDILKIISKAKKKIRPLSDSERVLMAKSITKGIHFEFHFTYR FT SLGLYLPKVTNSLTVCNKNR" XX SQ Sequence 8219 BP; 2540 A; 1343 C; 1712 G; 2624 T; 0 other; gaaatactac ccaggttttt tccttgagtt atgcttttag cttaagctcg aatcattggt 60 tgtcgtcatg actcgcattt tttgcgatga atgactcaat ctattcggga gtctatggga 120 ctttgtaatc cgagaactcg catcagtgtg acgtattgga tgcaaagtga ctgcccgtca 180 tatcttttac ttttctgcgt ttataaatca aaaacccaaa aatatatctt ctctccataa 240 gagagtacct aatataatac ctagctcagc ccactaaacg aaacagaata ttttgagcga 300 taaaaaaggt aacaccaatg ggccggtagt tatcgaagtt ttgatgggtt tattcaaacc 360 catcctccct tataaggggt cttacgatac ccctatagcc cccgttatct agtaaatacg 420 tatatattgt gaatagtttt acttttgttg atagttcttc ttcagatttt atcttaatgt 480 tgatattgtg attactgttt attaggaagt aatttcttat tagatgtttt acagttttat 540 cgttggtgtt tatatatggt atgtcatatt tttaagtttg gattttccct ttatttttct 600 tttttagaat attgtctaga ctatatgtta atagtttgtt ttttgttatc agcatatagt 660 atgttttgcg attacttgtt ttctttaagt attaacttat taaatatatt ttgattttct 720 cttttgtatt ttttcccggt cgttttaata ttgttattag gttgttatct tgatgatcat 780 atgttagagt atttgttaga ctatgtagta tagtcttctt ttgagtgtct atctgttagt 840 tttctttctt gattctattg acttcgttgt ttatgtttat actgttagtt ttgaagctca 900 catacgttta cttctcttca attgtttagt taatatattt tgagtattct ttaattcttt 960 cattcccttt ttcttctttt gtattatgga ggctaaagct ggtttagact ttggtaccac 1020 cttcagcact atctccgcgt acgtcggggg tacgatgaag gtccttagaa taaacgggtc 1080 ggagtttatt cccacctgtt tatctgtcac ggctacaggc gacgtggttg ttggtggggc 1140 tgcccaggtt ttggattctt cgcaattacc ccattgctat ttctatgact taaaacgttg 1200 ggttggtgtt gataggttgt cctttgaaga aataaaacgt aagatatccc cacagtatac 1260 ggtcagattg gaaggtaatg atgtgctaat aacaggaatc tcgaaggggt tttcttgtac 1320 atatactgtg aaacagctca ttcttctcta tgttgacacc ttggtcagac tattctcaaa 1380 tgttgaaaag ctgaagatcc tgagtttaaa tgtgtcagtt cccgcagatt acaaaaccaa 1440 gcaacggatg tttatgaaat ctgtttgtga gtcgctcggt tttccgttga gaaggatcat 1500 aaacgaacct tccgccgcag ctatttactc gatatcaaag catcctggct tcgactattt 1560 cttagtctat gattttggag gaggtacctt tgatacttct ttgatagcga aggacgggaa 1620 atttgtcact gtggcagata ccctgggaga ctcgtttctg ggtggtagag atatagatcg 1680 tgcgattttg tcacatatta tgcgtacgaa cagtcttcag aagccgttgt cagcagattc 1740 acttgcggca attaaagaag aagttaactc cactggtagg agtaatttca atgttttgga 1800 cgtcgacggt agcattatct ttgtgaactt ttcgggtgag gaattagaca agatagtttc 1860 gaagtttact gctaagagtt tgaagatact taaagcaata gcagatagga ataaaatcac 1920 ttctggggct cttttcttgg taggaggatc ttcgttactt agaaaagtcc aattagatgt 1980 tagtaatttt gctaaatcta ttggacttac gccaattatc gataaagact tgaggtctgc 2040 agtgtcctac ggctgttcca tgatgcatgc ccaagaggac agtggttcta tggtttacat 2100 agattgtaac tcacatcctt tgatggatgt gtccttgttt gctaatccaa gagtcataat 2160 tcggaagcca atgtctgttc ctttctcata taaaactacc agaaaagttg atcgacacat 2220 gatgactgct gtaaatgtgt atgaaggatc cagtcttttc gtgttagata atgactggct 2280 tgttagtgct aatgtgaaca cacaagattt tgtagattta gggcaagaac tatcgtatgt 2340 gtataaatat aatgttgatg gtattcttga cctttttgtt cgaaacgaat caactggagt 2400 cgagagtctg ttgcctaact catttgcctt gactgaaaag gtaaagaagt tagatttgaa 2460 cctgacacaa ctgtcaagtg ttgacgaatt ggcaacagtt gtctccattc tcagtcattt 2520 tgattcgagt tttagtagtc tcttaaagtt ggtcaatact ccatccattt ttgaaacgtc 2580 agctgcaaaa ttcggtgact taagatcatt gtatgaacgt ttgatcttcg ttaataagaa 2640 cttttcttga gctttcttcg tttttctaat aatgtcacag tctataatcg atagtgattt 2700 tgtgactgaa acattcagat atgcttttaa gaagactgat gttagagata aattggaaag 2760 acttaatgaa gtcatgaaag ataatttaga ccagatcaat aggactaagt attctttcaa 2820 ttttcaagga cagacctaca atctttcatc gaattatcag gttaggaacg gggtcgttca 2880 tgtgaatact gaggctcctt tagaggtttt gaagcttttg tctgtatata tgtattatgt 2940 ggaaccaaag tacattgata tgtcacctta cagtcctgaa tctttattcg gtaatccgaa 3000 ttatatgaag gctgttaaga tgtggaagcc ttactatgac aagtcgatga acgagtattt 3060 gaatgataga agtgaggttg ggtgtttata caccatggac gacatagaca agaactatcc 3120 tacactgagt caaacgagga aaattactct atatagagtt tgcaattcct taggaaaact 3180 cgtggaccta aaagagctta gtgccggtgt acttaaagct tttgaggtca aaacttctga 3240 cgtcggtcaa gcagtcatga cgacaactac caacaatgca ctctttggtg agtgtgtcaa 3300 ggtgttcaaa gattttatag ttctcaattc tacaaaggct gggaaagaaa agatagaggt 3360 taatagaaag tttttgaact ctttcctgca atgtctgtct ccaaaggacg aactcggtaa 3420 tctaggcgaa aatccgttgc taatcgcctg gtttatgcga gaattcacca accgtacaaa 3480 gaacagtaag ggttataagg acaattttaa ggctgtggga gatttgagtc aaccaatgct 3540 taagtttctc aaggacgtgt tcttaaaaga tctgagtcta gatgaagact ctctattcat 3600 aacttttcct aagaactctg tagtggagat agtcgatcaa gtgataccgc tagctaaatt 3660 tcataggaat caagcactcc caaaaccaat gagtaattct tgcgatttac ctagggacgt 3720 tgacgaattg gtttctaaaa ccatcgcaga atatttgggt aaattcgtca agactgatga 3780 agatttgttg ctagatgcct ttcttttcgt attaggcaga tgtacgacga atcagaagcg 3840 ttggacttcc ggttttgaaa tagattttaa aattttgggt gagagaatca agtttgattc 3900 caaagattta tggtatcatc tagtcaatgt tgttcgtaca aaccatccgc ggtttagaac 3960 gaataatttg attagacagt gggccaacaa tagaggtgat agagccaggg caatgtttaa 4020 aatttgtgag taccaccctg gactgtttgg tagtatcccc agaatagaca atcacatgcg 4080 gttcgatttc tttaagttgt tgaatttacg attgatgtct gagtcggaaa aaatgtctta 4140 ttacacactc cgtcttatga ctgagagtaa atcgaataac agtgataaag atttttgtaa 4200 gttggtttca tggatttcag tgaactgatt gagaagtatg gagttgagag gatttcttct 4260 ttgacgtcta gattgttaga aataaaaaga actggagtcg gtctcgtgaa tttgttgcta 4320 aatctggtta atgagaattt tattcacttc gactcaaata ggtctccgtg tgggtttgaa 4380 aaagaggatc acgatcttat tttacaaata attcctttat tgcgtatttg aggtttgttc 4440 tttatattat cataacttaa cagatggata ctgacaaagt aaacgatgac aagaactttg 4500 actctgactc cgatgtaggt ttcggggaca ggaatgtgaa cgataatcta cgaagacgtt 4560 ccgatacgat tgacaacgaa aacgtcaaca atgtgggaag aagagacatg gagttaacca 4620 gtggtatatt aacatctgag caactggctc ttgcgaggtt gggaaaaata caggtttatt 4680 ctaactcacc agacattatg tctaagagtc aagaagatga attcaagaga catatggaga 4740 gttttttgaa gcaaattaca ggggaaacta cattatcttc tgagattttt gcaggtttct 4800 acgcatctct attccaagct tgggcaaacc aaagtacttc ggaaaagaac gcgtcgaatg 4860 caaatctcga gaatatgttc atggttgatg gtaaggagta cagttggaga actcatagtt 4920 tcatcaatca catgcaatcc aatatgcccg acgtgaagaa tgctgctagg aaatgggcca 4980 gggctcacgc gaatgattat aaggttcttg ttggtttggg tatagtaaaa cctgactatc 5040 atttgcaagc taaacaaggt gtattaccgg agtattggca tcttgcaacc gacttcatga 5100 gaggtaatga catggcgacg actgcagatg gattagcagc aacactgatg atgaaaagga 5160 acgctctttg taacaaggac aacaagaatt ctatttataa cgtaactcaa ttgaccggta 5220 ctggtcttca ctgttgagta tggatatatt agaactagaa gtggataaca ttatatcgac 5280 aaattatccc gatgatgaat ccgaaatagt gactagagct gtgggatgta agttcaatca 5340 agattattct ctaccttata aagatggaga acaagtcgac ttctctatac ctcacacttc 5400 cgcgttaaga agtaaacctg tcactttaga actatatttt catataggat ccgggtatgt 5460 tgtgtatact tgtaaaccca ccgataactt caaccaaaag atatatgagt cgaatttggg 5520 atcattcttc tcatctttta ggaatctcgt cactcccaga agaccgcgtg gtatgaacgc 5580 atttagattt ggttatttga gagagggaaa cgactgcttt ataatagttg aaggttggag 5640 agtcgtgcag atatcaaatg ccaacactat attcggcgtt tcattgaggt tgtcgttaga 5700 cattggcggc gtaatcttca gcaagtccga caaactaagt gccaatcaaa ttgctctaga 5760 ttcgtgttta gaatgtacta gaccagatgg tttgttgaaa ggggccaaac cgaaaagtgt 5820 taacatattc tctgagacaa cccaagaaag tgtgaaagta acaccaattg gagacattcc 5880 attaagtgtt ttcaattcag taaccaatct caatctaaaa atactgagaa gtggtgacga 5940 ttctacatcg attaaagatg agactcagat tgacaaagac cgtactacaa tgagtaatga 6000 agaagataaa aagaaaatct tccgcattta ttactcaaat ttcttagaca atggttttaa 6060 gaattcttta aactacacta tactttggcc gcagatatca tgtaacggtg tagatgtaaa 6120 tcaccaattt tggatcggtg acagagaaga tatgttggag ggaggtgtac attatataca 6180 caccacatcg accaatacga tattcttcgt acatcgtaag gggaacgttt cagaatattt 6240 aaaaataaac gaagatcaat ctgccaggat actgaagact ataccaactg aactcacctt 6300 cagtatagtc aaaaatcctg gaagtaagta tgtggtgtat gtcaatggag aaaaattttt 6360 aagtacattt ctgcctaatg ttggtaccaa agtccaaata ggttgggaaa taaagttgta 6420 caaagataag gtaaaaagtt ttgagaagtc caatttgaaa actttcgaaa ttgttcctag 6480 agaaacgcaa gttaagtcag ataatgagct tgtgacacta agaaaatatg agtttggaac 6540 aacagatttc aatgctagtg gatgggtact tgaaaagaag ttggggctga gattgaaaac 6600 aattaagcat gtcaacgaac ttttcaccga tgacaaacct cctgagaaag aagaacaagt 6660 cgataagacg gataagcaag acaagaaaac acccgaagaa aagatcgacg acaccgtagt 6720 tgttgacaag acagaggatg cgaaagaaaa cttggaagag ttcgcactca aagccgttgt 6780 ttatcaacca ctatcaaggt tagaagatga gaaaatcttc aacaacatga ttaaatatta 6840 tgaaagtaag ggattaactc aaagacaagc cgaattactc atctatcaaa tgggagtttc 6900 cttttgtacg agtgttaaca gttgtgcaaa ttccaaccta catttaattg tatctaaacc 6960 ggatggaagt ttgctcaagg tgtctaagtc cgaccacgta atgaggatgc aaatgttgtg 7020 taagaagtac tgcaacgttg aaagaacgtt acttagaaat agaagtgata aaatattcag 7080 acttctgaag gctaaggtac tagtcttacc actgaaacat gctagggtca gaggtataaa 7140 accggaaatg gcacatatgg catgtgattt catggactac accaccatcc cattgagtga 7200 tgaggaagtc cttgcattaa attcaatgca aagatttgta ttgatgagaa ataagcaccg 7260 caggtccata gtaaatgtga atcaactgtt ttgaaaatat gtcgggctgg gatgacatac 7320 atatacaaca aaattatgtt tcttccagcg ttcgtaatga tgatgacatt gcgaagatat 7380 gtgccagaac atttaaccga gcagttaatt tattaactga ttatcctcaa catactattc 7440 ccgaacttcg agaaagcaga tttgagttgg gatgtatccg aagtctgtgt gaaaacgatg 7500 acttcaatat caaccttgga gcagataata acaatctttt ccaaggattg aacaaattgg 7560 gcgttagggc cgactcactt agagttaaca gtgagaggtt cttcccctca atatccagta 7620 aggtgatgac caacgtgata gattctattt cctctgtgat ggagtttgtt atagatctta 7680 atcattctgg gttttcaacc ttatgggttg gtgagatcat gaccatatat gatgtcaaca 7740 gttttgacaa actggtagat gctatatata ggtttttatt atacacctac aacttccctg 7800 aggaagtgca atttcatatg accttgaatt tgtttaatga cgatatttta aaaataatat 7860 caaaagcaaa gaaaaagatc agacctctta gtgatagtga gagggtttta atggctaaaa 7920 gtattactaa agggattcat tttgaattcc actttactta taggtcttta ggtttatatc 7980 ttcctaaagt aactaatagt ttaacggttt gtaataaaaa tcgataaaga tattagggta 8040 gatttgatta atgtttatac cctagagtca tacacctgag agattcggag tgtgtattgt 8100 aaaaactcaa aaaatatatg tttcgtatac gtatttctat ttagagtgtg tgtatgaacg 8160 gttttcctaa atcgtcgtga gacggacctt ggaaaaccta gtatttaaat aactaggtc 8219 //