ID   HQ283393; SV 1; linear; genomic RNA; STD; VRL; 2219 BP.
XX
AC   HQ283393;
XX
DT   21-FEB-2011 (Rel. 107, Created)
DT   21-FEB-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate SFQT1-2 segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2219
RA   Du Y., Xiang B.;
RT   "Complete nucleotide sequence of the RNA3 of Cucumber mosaic virus
RT   infecting processing tomato in Xinjiang";
RL   Unpublished.
XX
RN   [2]
RP   1-2219
RA   Du Y., Xiang B.;
RT   ;
RL   Submitted (28-AUG-2010) to the INSDC.
RL   Phytopathology, ShiHeZi University, ShiHeZi, Xinjiang 8320003, China
XX
DR   MD5; e61fadb826c6fbb40ccde702683e2535.
DR   EuropePMC; PMC3550809; 23730005.
DR   EuropePMC; PMC4188193; 25674612.
DR   RFAM; RF01084; TLS-PK3.
XX
CC   GenBank Accession Numbers HQ283391-HQ283394 represent the complete
CC   genome of Cucumber mosaic virus SFQT1-2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2219
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="tomato"
FT                   /isolate="SFQT1-2"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12305"
FT   CDS             122..961
FT                   /codon_start=1
FT                   /product="3a"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:F1CGZ4"
FT                   /protein_id="ADX86745.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVTLHNHDLPALVSFQPTYDCPMEIVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESPQYVLTDAKINQNARSESEELNVESPPIAIGSSSASRSETFRPQVVNGL"
FT   CDS             1262..1918
FT                   /codon_start=1
FT                   /product="cp"
FT                   /db_xref="GOA:F1CGZ5"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:F1CGZ5"
FT                   /protein_id="ADX86746.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFKVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTLTSITLKPPKIDRGSYCGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2219 BP; 506 A; 522 C; 539 G; 652 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgttg agtcgtgttg        60
     tccgcacatt tgagtcgtgc tgtccgcaca tttttctttc agtgtgttag attcccgagg       120
     catggctttc caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctga       180
     cgaacttcaa aagatattat ttagccctga agccattaag aagatggcta ctgagtgtga       240
     cctaggccgg catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc       300
     cgaagtaacc cacggtcgta ttgcttcctt ctttaagtct ggatatgatg ctggtgaatt       360
     gagctctaaa ggatatatga gcgttcctca agtgttgtgc gctgttactc gaacagtttc       420
     cactgatgct gagggatctt tgagaattta cctagctgat ctaggcgata aggagttatc       480
     tcccatagat gggcaatgcg ttacattaca taaccatgat ctacccgctt tagtgtcttt       540
     ccaaccgacg tatgattgtc ctatggaaat tgttgggaat cgtaagcggt gttttgctgt       600
     tgttatcgaa agacatggtt atattgggta caccggcacc acagctagcg tgtgtagtaa       660
     ttggcaagca cggttttctt ctaagaataa caactacact catatcgcag ctgggaagac       720
     tctagtactg ccgttcaaca gattagctga gcaaacaaaa ccgtcagctg tcgctcgcct       780
     gttgaagtcg caattgaaca atatagaatc tccgcaatac gttttaacgg acgcgaagat       840
     taatcagaat gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccatcgcaat       900
     cgggagttct tccgcgtccc gctccgaaac cttcagaccg caggtggtta acggtcttta       960
     gtgtcttcgt tgcgtattag tatataagta tgtgtgagtc cgtacataat actatatcta      1020
     tagtgtcctg tgtgagttga tacagtagac aactgtgacg cgatgtcgtg ttgaggagag      1080
     agcacatctg gttttagtaa acccacaaca tatctttgag gttcaattcc tctcgttccc      1140
     tgttgggccc ctttactttt tcatggatgc ttctccacga gattgcgttt cgtctactta      1200
     tcctaagagt gttgtgctgt gtgttttctc ttttgtgtag tagtttgagt cgagtcgagt      1260
     catggacaaa tctgaatcaa ccagtgctgg tcgcaaccgt cggcgtcgtc cgcgtcgtgg      1320
     ttcccgctcc gcttcctcct ctgcggatgc taactttaaa gtcttgtcgc agcagctttc      1380
     gcgacttaac aagacgttag cagctggtcg tccaactatt aaccacccaa cctttgtggg      1440
     tagtgaacgc tgtaaacctg ggtacacgct cacatctatc accctgaagc caccaaaaat      1500
     agaccgtggg tcttattgtg gtaaaaggtt gttgctgcct gattcagtca cggagttcga      1560
     taagaagctt gtttcgcgca ttcaaattcg agttaatcct ttgccgaaat ttgattctac      1620
     tgtgtgggtg acggtccgta aagttcctgc ctcctcggac ctatccgttg ccgctatctc      1680
     tgctatgttt gcggacggag cctcaccagt actggtttat cagtatgctg catccggcgt      1740
     tcaagccaac aacaaattgt tgtacgatct ttcggcgatg cgcgctgata ttggtgacat      1800
     gagaaagtac gccgtcctcg tgtattcaaa agacgatgcg ctcgagacgg acgagttggt      1860
     acttcatgtc gacatcgagc accaacgcat tcctacatct ggggtgctcc cagtttgaat      1920
     ccgtgttttc ccagaaccct ccctccgatc ctgtggcggg agctgagttg gtagtattgc      1980
     tttaaactgc ctgaagtcac taaacgcttt gcggtgaacg ggttgtccat ccagcttacg      2040
     gctaaaatgg tcagtcgtgg agaaatccac gccagtagac ttacaagtct ctgaggtgcc      2100
     tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ctgtgtactt ctagcacaag      2160
     atgctagttt cagggtacgg gcatcccccc atttaatggg ggtctccaaa aggagacca       2219
//