ID HQ267857; SV 1; linear; genomic RNA; STD; VRL; 3203 BP. XX AC HQ267857; XX DT 27-MAR-2011 (Rel. 108, Created) DT 13-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Cherry virus A isolate V590 RNA replicase gene, partial cds; and putative DE movement protein gene, complete cds. XX KW . XX OS Cherry virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-3203 RX AGRICOLA; IND44685781. RA Marais A., Svanella-Dumas L., Barone M., Gentit P., Faure C., Charlot G., RA Ragozzino A., Candresse T.; RT "Development of a polyvalent RT-PCR detection assay covering the genetic RT diversity of Cherry capillovirus A"; RL Plant Pathol. 61(1):195-204(2012). XX RN [2] RP 1-3203 RA Marais A., Svanella-Dumas L., Faure C., Gentit P., Candresse T.; RT ; RL Submitted (16-SEP-2010) to the INSDC. RL Virology, INRA, 71 Avenue Edouard Bourlaux BP81, Villenave d'Ornon 33883, RL France XX DR MD5; ccbeb6dee032beacb6b9a66d3b1ade47. XX FH Key Location/Qualifiers FH FT source 1..3203 FT /organism="Cherry virus A" FT /host="Prunus avium" FT /lab_host="GF-305 peach" FT /isolate="V590" FT /mol_type="genomic RNA" FT /country="France" FT /db_xref="taxon:42882" FT CDS <1..2908 FT /codon_start=2 FT /product="RNA replicase" FT /note="contains RNA dependent RNA polymerase and coat FT protein; RdRp/CP" FT /db_xref="GOA:F2WZ14" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:F2WZ14" FT /protein_id="ADZ96385.1" FT /translation="KFAPLNRYIEKKVTQCLPGNFYIHQKKNFDELEKWVKSYDFSGVC FT TESDYEAYDASQDSYTLAFEYELMKYLGVSNSMIEDYLYLKMHLNCKLGNLAIMRFTGE FT FCTFLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPENLQHTNLLKKFSLKAKV FT DFTRSPTFCGWNLSRYGIVKKPELIAARLAVAKQKGEVNLVLDSYFLEHLYAYNKGDHL FT FEILSEKELEHHYNLTRFFVKHGNLLKGESKKKFMETKEIEGGLFGECEFGNDGIFRGY FT MDRVKEKVKIDQINGEIFKINSEMNKFNSRIYKINKMSFVTSTTIFEFGHVTPNEFNQL FT ESLPPQTHWPYDEVRTYMPLNLKNSYESRIKSNKILSILRNQKSLSSLESGSNLGSRVL FT GGLKIFREECLSYQSRSFSKGLQEMNQEYSLTQFVRRTFTVMRMPLTPRCLLLLKDFSL FT QLLYLQAALVKVMLHSSISLMKLSLRLSRRPLLSTRCFILGQSSYVLHAFSSSRNQSMA FT GLCTLIQGSWTNMMHAKRALVSNCKRVLPITFIGQIIRCPHMIQTCIGLLESSLNSMQS FT MLLTIPTCSSSILESCTNLATKALQKRQLPQMLGRSFKHFLGLLDYQILNLFSRMKILS FT TLQLWLSSMLVLIRASGRVVSSKVRHAQQEPEGIMPEVRDRVLNQSQDLLKKILNSKGE FT ICLGQIHVGLKIFSSIQNKGFQLIKNSSTNLISAILREGTQISHMALSIVEQNYNEIRR FT GLGNYIWENMIDPRDLLHLTAKPAVEASEGVAATPAIVLSENQRAVKNTIRNYYLRIMF FT GNLAVMGTSEQTDYPGEHLAIPRPVIENQEALTAHLPAGMSLLAFATNVKAWGVVGAEG FT KFAGLTFRQLCEPFAEQAYNFFRENHGAVSFIYLKNPGAYFNCPAVVFDFNKGLPLTII FT KIGKNANAISACNQRLFNREGKKAVFAAQGEVNLSFDA" FT CDS 1225..2616 FT /codon_start=1 FT /product="putative movement protein" FT /db_xref="GOA:F2WZ15" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F2WZ15" FT /protein_id="ADZ96386.1" FT /translation="MSIIPVKKFLQRVAGDESRIFIDAIRAKDIYSDANAFNSKVLTAV FT KRFQSSIAIPASCTGESNVTQFNIFDEIELEAIKKASAEYSMLHLGAIIICVTCFFKLK FT KPINGRIVYFDPRFLDKHDACQAGFSFQLQTGSAYYLYRPNYPMSTHDPNMHRAARIKF FT EFDAINVVDNSHLFFIDFGVMYQLSNQSTAEKTTAADVGAQFQALFGSSGLPNPESFLE FT DEDIVNPPTVALIDVSVDQSFRKGGFFKGPPRSTRARRYHARSKRQGFESIPRFAEKDS FT EQQRRNLLRSNSCRAENFQFNPEQRFSVDQEFINKFDKCNSQRRDSNLTHGFEHCGAEL FT QRNKKGPWKLHLGEYDRSKGSVTSNCETSSGGIRGSGSNPSNSIVREPESCKKHHQELL FT PEDNVWESCSDGNKRTDRLPRGASSDSETSDRESGGSDCTSPSRHVIVSFCHKCESMGC FT SWCRR" FT 3'UTR 2906..3203 XX SQ Sequence 3203 BP; 994 A; 580 C; 701 G; 928 T; 0 other; taagtttgca ccactaaaca ggtatattga gaagaaagtg acccagtgct tgccaggtaa 60 tttctacata catcagaaga aaaattttga tgaactcgaa aagtgggtga aatcatatga 120 ttttagtgga gtctgcacgg agtcagatta tgaagcttat gatgcatcac aagattctta 180 cactctggcc tttgagtatg aattgatgaa gtaccttggt gtctctaaca gtatgattga 240 ggattatctt tatctcaaaa tgcatcttaa ttgcaagcta gggaacctag ctatcatgag 300 attcactgga gaattttgta ctttcttgtt caataccttg acaaacatgt tattcacatt 360 catgaagtat gatgtcagga aaactcatgc aatatgtttt gctggtgatg acatgtgcgc 420 caatgtgagg cttccagaga atttgcaaca cacaaattta ctcaaaaaat tttctctgaa 480 agctaaagtg gattttactc gctcccccac tttttgcgga tggaatctat cccgatatgg 540 aatcgtgaag aaacctgaat tgattgccgc caggttagct gtggctaaac aaaaagggga 600 ggttaattta gttttggatt catatttcct agagcatttg tatgcttata acaaaggtga 660 tcacctcttt gaaattttga gtgagaagga attggaacat cactacaact tgaccagatt 720 ctttgtcaag catgggaacc ttttgaaggg tgagtctaag aagaaattca tggaaaccaa 780 ggaaattgaa gggggtttat ttggtgagtg tgagtttggg aatgatggca tcttcagggg 840 ctacatggac agagttaaag agaaagtcaa gattgaccaa ataaatggtg aaattttcaa 900 aattaactct gaaatgaaca aatttaattc aagaatttac aagatcaata aaatgagctt 960 tgtcactagc accacaatct ttgaatttgg ccatgtgaca ccaaatgagt tcaatcaatt 1020 ggaaagcctc cccccacaaa cacattggcc atatgatgaa gttagaacat acatgcctct 1080 gaatctgaag aactcatatg aatctaggat taagagcaac aaaatcttgt caatactgag 1140 gaatcagaag agcttaagta gtttggaatc aggctctaat ttaggttcaa gagttttggg 1200 gggcttgaaa atattcagag aagaatgtct atcataccag tcaagaagtt tctccaaagg 1260 gttgcaggag atgaatcaag aatattcatt gacgcaattc gtgcgaagga catttacagt 1320 gatgcgaatg cctttaactc caaggtgctt actgctgtta aaagatttca gtcttcaatt 1380 gctatacctg caagctgcac tggtgaaagt aatgttacac agttcaatat ctttgatgaa 1440 attgagcttg aggctatcaa gaaggcctct gctgagtact cgatgcttca tcttggggca 1500 atcatcatat gtgttacatg ctttttcaag ctcaagaaac caatcaatgg caggattgtg 1560 tactttgatc caaggttcct ggacaaacat gatgcatgcc aagcgggctt tagtttccaa 1620 ttgcaaacgg gttctgccta ttacctttat aggccaaatt atccgatgtc cacacatgat 1680 ccaaacatgc atagggctgc tagaatcaag tttgaattcg atgcaatcaa tgttgttgac 1740 aattcccact tgttcttcat cgattttgga gtcatgtacc aacttagcaa ccaaagcact 1800 gcagaaaaga caactgccgc agatgttggg gcgcagtttc aagcactttt tgggtcttct 1860 ggactaccaa atcctgaatc ttttctcgag gatgaagata ttgtcaaccc tccaactgtg 1920 gctctcatcg atgttagtgt tgatcagagc ttccggaagg gtggtttctt caaaggtccg 1980 ccacgctcaa caagagccag aaggtatcat gccagaagta agagacaggg ttttgaatca 2040 atcccaagat ttgctgaaaa agattctgaa cagcaaagga gaaatttgct taggtcaaat 2100 tcatgtaggg ctgaaaattt tcagttcaat ccagaacaaa ggttttcagt tgatcaagaa 2160 ttcatcaaca aatttgataa gtgcaattct cagagaaggg actcaaatct cacacatggc 2220 tttgagcatt gtggagcaga attacaacga aataagaagg ggccttggaa actacatctg 2280 ggagaatatg atagatccaa gggatctgtt acatctaact gcgaaaccag cagtggaggc 2340 atcagaggga gtggcagcaa ccccagcaat agtattgtca gagaaccaga gagctgtaaa 2400 aaacaccatc aggaattatt acctgaggat aatgtttggg aatcttgcag tgatgggaac 2460 aagcgaacag acagactacc caggggagca tctagcgatt ccgagaccag tgatagagaa 2520 tcaggaggct ctgactgcac atctcccagc aggcatgtca ttgttagctt ttgccacaaa 2580 tgtgaaagca tggggtgtag ttggtgcaga aggtaagttt gctggattaa cctttagaca 2640 gttatgtgag ccattcgctg aacaagctta taactttttc agagaaaatc atggagccgt 2700 ctcatttatt tatctaaaga atccaggagc ttatttcaat tgcccagctg tggtttttga 2760 tttcaataaa gggttgcctt taactataat caaaattgga aaaaatgcca atgcaatatc 2820 cgcctgtaac caaaggttgt ttaacagaga aggaaagaag gctgtcttcg ctgcacaggg 2880 cgaagttaac ttaagttttg atgcttaagt tttggttgtt gcttgaatgc cagagcaatt 2940 aaaagatgat ggcataggtc ttggattgtg atgttaactc tcaaatccat caccggcacc 3000 aatcaagggt gtgtacttgg tcactagaga agaagtgtaa gtcttctcca accttaagag 3060 aggttagttt ctcttccctg gtttaagtac taggatttgc atcatttgtt ctaaaggttc 3120 tttggatgca tcttatttag aacctttccg ctttcagtgc tatctaactg cactttgctt 3180 taggactttt ttatcttttt ccg 3203 //