ID HQ267856; SV 1; linear; genomic RNA; STD; VRL; 3205 BP. XX AC HQ267856; XX DT 27-MAR-2011 (Rel. 108, Created) DT 13-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Cherry virus A isolate PF RNA replicase gene, partial cds; and putative DE movement protein gene, complete cds. XX KW . XX OS Cherry virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-3205 RX AGRICOLA; IND44685781. RA Marais A., Svanella-Dumas L., Barone M., Gentit P., Faure C., Charlot G., RA Ragozzino A., Candresse T.; RT "Development of a polyvalent RT-PCR detection assay covering the genetic RT diversity of Cherry capillovirus A"; RL Plant Pathol. 61(1):195-204(2012). XX RN [2] RP 1-3205 RA Marais A., Svanella-Dumas L., Faure C., Gentit P., Candresse T.; RT ; RL Submitted (16-SEP-2010) to the INSDC. RL Virology, INRA, 71 Avenue Edouard Bourlaux BP81, Villenave d'Ornon 33883, RL France XX DR MD5; 1b687dfd3f0dbbdda3a0e82ec606384c. DR EuropePMC; PMC4901221; 27284130. XX FH Key Location/Qualifiers FH FT source 1..3205 FT /organism="Cherry virus A" FT /host="Prunus domestica" FT /lab_host="GF-305 peach" FT /isolate="PF" FT /mol_type="genomic RNA" FT /country="France" FT /db_xref="taxon:42882" FT CDS <1..2908 FT /codon_start=2 FT /product="RNA replicase" FT /note="contains RNA dependent RNA polymerase and coat FT protein; RdRp/CP" FT /db_xref="GOA:F2WZ12" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:F2WZ12" FT /protein_id="ADZ96383.1" FT /translation="KFAPLNRYIEKKVTQSLPGNFYIHQKKNFDELEKWVKSYDFSGVC FT TESDYEAYDASQDSYTLAFEYELLRYLGVSNSLIEDYLYLKMHLNCKLGNLAIMRFTGE FT FCTFLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPENHQYSDLLKKFSLKAKV FT DFTRSPTFCGWNLSKYGIVKKPELIAARLAVAKQKGEVNLVLDSYFLEHLYAYNKGDHL FT FEILSEKELEHHYNLTRFFVKNSRLLKGESKKKFMETKEIEGGLFGECDFGGESIFRDY FT INRVKNKVEIDLLNEKILKINTELNKFDPKIYMLNKMGFAVSTTIFEAGHIAPNEFNQL FT KSLPPQTHWPYDEVRPYMPLNLRNSYASRVEGNRFLSILRSQKNLCNLESGSVLGSRVL FT EGLKVFKEECRSYQLRSSFKELQETNPEFSLTQFVRRTFTAMQMPSIPKCSQLLKGFSL FT QLLYLQAALVKVMLHSSISLMKLSWRLSRGPLLSTQCFILEQSSYVLHAFSSSRSRLMA FT ESCTLIQGFWTRMTHAKQVLVSSYKLDQPIIYIGQIIQCPHMIQICTGLLGLSSNLMQS FT MLSIIPTYSSLILESCTSSVIKALQRKQLPQMLGLNFKHCLGLLGYQTLNLFSRTRILL FT TLQLWLSSMSVLIRALGRVVSSRVHHAQQELEDIMPEVRDKVLNQSQNLLEKILNSRKE FT ICLGQIHVGLKIFSSIQNKGFQLIKNSSTGLISAILREGTQISGMALSIVEQNYNEIRR FT GLGNYIWENMIDPRDLLHLTAKPAVEASEGVAATPAIILSENQRAVKNTIRNYYMRIMF FT GNLAVMGTSEQTDYPGEHLAIPRPVIENQEALTAHLPAGMSLLTFATNVKAWGVVGAEG FT KFAGLTFRQLCEPFAEQAYNFFRENHGAVSFIYLKNPGAYFNCPAVVFDFNKGLPLTII FT KIGKNANAISACNQRLFNREGKKAVFAAQGEVNLSFDA" FT CDS 1225..2616 FT /codon_start=1 FT /product="putative movement protein" FT /db_xref="GOA:F2WZ13" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F2WZ13" FT /protein_id="ADZ96384.1" FT /translation="MSIIPVKKFLQRVAGDESRIFIDAIRAKDIYSDANAFNSKVLTAV FT KRFQSSIAIPASCTGESNVTQFNIFDEVELEAIKRASAEYSMLHLGAIIICVTCFFKLK FT KPINGRIVYFDPRFLDKNDACQAGFSFQLQTGSAYYLYRPNYPMSTHDPNMHRAARIKF FT EFDAINVVDNSHLFFIDFGVMYQLSNQSTAEKTTAADVGAQFQALFGSSGLPNPESFLE FT DEDIVNPPTVALIDVSVDQSFRKGGFFKGPPRSTRARRYHARSKRQGFESIPKSVGENP FT KQQERNLFRSNSCRSENFQFNPEQRFSVDQEFINRFDKCNSQRRDSNLRHGFEYSGAEL FT QRDKKGPWKLHLGEYDRSKGSIAPDCEASSRGFRGSSSHASDNLIRESEGSKEHHPKLL FT YEDNVWESCSDGDKRTDGLPRRTSSNSETSDRESGGSNCTSPSRHVIVNFCYKCEGMGC FT SWCRR" FT 3'UTR 2613..3205 XX SQ Sequence 3205 BP; 987 A; 584 C; 702 G; 932 T; 0 other; caaatttgct cccctcaata ggtacattga aaaaaaagtc actcaaagtc ttccagggaa 60 tttttatata catcagaaga agaactttga tgagcttgaa aaatgggtga aatcatatga 120 tttcagtgga gtctgtacag aatctgatta tgaagcttat gatgcctcac aagactctta 180 cactttagcc ttcgagtatg agcttttgag ataccttggt gtgtcaaaca gcttgattga 240 ggattatctc tatctgaaga tgcatttgaa ttgcaaactt ggaaatctcg ccataatgcg 300 gttcactgga gaattctgca cctttctttt caatacatta actaacatgt tgttcacctt 360 catgaagtat gatgtaagga aaacccatgc aatatgtttt gcaggtgatg acatgtgtgc 420 taacgtgaga ttgccagaga atcatcaata ctcagatttg ctgaaaaagt tttctttgaa 480 agctaaggtg gattttactc gttctccaac tttctgcgga tggaatctct caaagtatgg 540 gatagtcaag aagccagaat tgattgctgc aagattagct gttgccaaac agaaagggga 600 ggtcaatttg gttttagact catatttcct tgagcatctc tatgcgtaca acaaaggaga 660 tcatcttttc gagattttaa gtgagaaaga attggaacac cattataatc tcactagatt 720 ttttgtgaaa aatagcaggc ttttaaaagg tgagtcgaag aaaaaattca tggaaactaa 780 agaaattgag ggaggattgt ttggagagtg tgattttggt ggcgagagca tattcaggga 840 ctacatcaac agagtcaaaa ataaagtaga gattgaccta ttgaatgaga aaattttaaa 900 gattaacact gaattgaata aatttgaccc aaagatctat atgctaaaca agatgggatt 960 tgctgtcagc acaacaattt ttgaggcagg tcacatcgcg ccaaatgaat ttaatcaatt 1020 gaaaagcctc cctccacaga ctcattggcc atatgatgaa gtcagaccat acatgccatt 1080 gaatctcaga aattcatatg cttcaagagt ggagggtaat agatttttgt caattctaag 1140 gagccaaaag aatttgtgca atctagaatc aggctctgtc ttaggttcaa gagttttgga 1200 aggcttgaaa gtgttcaagg aggaatgtcg atcataccag ttaagaagtt ccttcaaaga 1260 gttgcaggag acgaatccag aattttcatt gacgcaattc gtgcgaagga catttacagc 1320 gatgcaaatg ccttcaattc caaagtgctc acagctgtta aaaggtttca gtcttcaatt 1380 gctatacctg caagctgcac tggtgaaagt aatgttacac agttcaatat ctttgatgaa 1440 gttgagttgg aggctatcaa gagggcctct gctgagtact caatgcttca tcttggagca 1500 atcatcatat gtgttacatg ctttttcaag ctcaagaagc cgattaatgg cagaatcgtg 1560 tactttgatc caaggtttct ggacaagaat gacgcatgcc aagcaggttt tagtttccag 1620 ctacaaactg gatcagccta ttatctatat aggccaaatt atccaatgtc cacacatgat 1680 ccaaatatgc acagggctgc taggattaag ttcgaatttg atgcaatcaa tgttgtcgat 1740 aattcccact tattcttcat tgattttgga gtcatgtacc agctcagtaa tcaaagcact 1800 gcagagaaaa caactgccgc agatgttggg gctcaatttc aagcactgtt tgggtcttct 1860 gggttaccaa accctgaatc ttttctcgag gacgaggata ttgttaaccc tccaactgtg 1920 gctctcatcg atgtcagtgt tgatcagagc tttaggaagg gtggtttctt caagggtcca 1980 ccacgctcaa caagagctag aagatatcat gccagaagta agagacaagg ttttgaatca 2040 atcccaaaat ctgttggaga aaatcctaaa cagcaggaaa gaaatttgtt taggtcaaat 2100 tcatgtaggt ctgaaaattt tcagttcaat ccagaacaaa ggttttcagt tgatcaagaa 2160 ttcatcaaca ggtttgataa gtgcaattct cagagaaggg actcaaatct caggcatggc 2220 tttgagtata gtggagcaga attacaacga gataagaagg ggccttggaa attacatctg 2280 ggagaatatg atagatccaa gggatctatt gcacctgact gcgaagccag cagtagaggc 2340 ttcagaggga gtagcagcca cgccagcgat aatcttatca gagaatcaga gggcagtaaa 2400 gaacaccatc cgaaattact atatgaggat aatgtttggg aatcttgcag tgatggggac 2460 aagcgaacag acggattacc caggagaaca tctagcaatt ccgagaccag tgatagagaa 2520 tcaggaggct ctaactgcac atctcccagc cggcatgtca ttgttaactt ttgctacaaa 2580 tgtgaaggca tggggtgtag ttggtgcaga aggtaaattt gctggcctga cattcagaca 2640 gttatgtgaa ccatttgctg agcaggctta caacttcttc agggaaaacc atggggctgt 2700 ttctttcatt tacctcaaga atccaggagc ttacttcaat tgcccagctg ttgtctttga 2760 cttcaataag ggactaccct tgacaataat taagattgga aagaacgcta acgcaatctc 2820 cgcctgcaat caaaggcttt tcaataggga ggggaagaag gctgtcttcg ccgcgcaagg 2880 tgaagtaaac ttaagttttg atgcttaagt ttctgtttgt tgcttgactg ccagagcaac 2940 taaaagataa tggcataggt cttgaattgc gatgttaact ctcgaattca tcaccgtcac 3000 caattaaggg tgtgtactta atcactagag aagaagtgta agtcttctcc aaccttaaga 3060 gaggttagtt tctcttccct ggtttaagta ctaggatttg catcatttgt tctaaaggtt 3120 ctttggatgc atcttattta gaacctttcc gcttttgagt gctatctaat cgcactttgc 3180 tttaggactt tttttctttt tcctt 3205 //