ID HQ264185; SV 1; circular; genomic DNA; STD; VRL; 2741 BP. XX AC HQ264185; XX DT 07-MAR-2011 (Rel. 108, Created) DT 30-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus isolate eggplant segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2741 RX PUBMED; 21676270. RA Pratap D., Kashikar A.R., Mukherjee S.K.; RT "Molecular characterization and infectivity of a Tomato leaf curl New Delhi RT virus variant associated with newly emerging yellow mosaic disease of RT eggplant in India"; RL Virol J 8(1):305-305(2011). XX RN [2] RP 1-2741 RA Pratap D., Kashikar A.R., Mukherjee S.K.; RT ; RL Submitted (16-SEP-2010) to the INSDC. RL PMB Lab, International Centre for Genetic Engineering and Biotechnology, RL Aruna Asaf Ali Marg, New Delhi, Delhi 110067, India XX DR MD5; 1c8d84982fc0b4d1fe1cbb5cd7be4adb. DR EuropePMC; PMC3125359; 21676270. XX CC GenBank Accession Numbers HQ264185-HQ264186 represent the complete CC genome of Tomato leaf curl New Delhi virus isolate eggplant. XX FH Key Location/Qualifiers FH FT source 1..2741 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="eggplant (brinjal)" FT /isolate="eggplant" FT /mol_type="genomic DNA" FT /country="India:Maharastra" FT /isolation_source="leaf" FT /collection_date="Oct-2009" FT /db_xref="taxon:223347" FT gene 121..459 FT /gene="AV2" FT CDS 121..459 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:F1CGW2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F1CGW2" FT /protein_id="ADY75695.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGMDQQADEQ FT KTQDVQNV" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F1CGW3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F1CGW3" FT /protein_id="ADY75696.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYACREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1048..1458) FT /gene="AC3" FT CDS complement(1048..1458) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:F1CGW4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F1CGW4" FT /protein_id="ADY75697.1" FT /translation="MITDSRTGEYITVDRAESGVYTWEIRNPLYFKILKHDSRPWLTQE FT DIITIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLERTIDVLTSYDIKLDIY" FT gene complement(1178..1597) FT /gene="AC2" FT CDS complement(1178..1597) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="suppressor protein" FT /db_xref="GOA:F1CGW5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F1CGW5" FT /protein_id="ADY75698.1" FT /translation="MQSSSHSRNHSIPVAKTSLPQKKKKSIRRRRVDLQCGCSYYTSIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALANTGRHNNDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1500..2585) FT /gene="AC1" FT CDS complement(1500..2585) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:F1CGW6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F1CGW6" FT /protein_id="ADY75699.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHIHILIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQKTANDAYAQAINTGNKDEALKVLKEFAPKDYVLQFH FT NLITNLDRIFQPRSEIYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPMSIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWTIKNAVFITLQEPL FT YSGRENIAPPEEEEEHSQEAS" FT gene complement(2252..2428) FT /gene="AC4" FT CDS complement(2252..2428) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F1CGW7" FT /protein_id="ADY75700.1" FT /translation="MGHRISIFLSNSKENSNAKITDSSTWCPQVGQHISIRTFRELNQH FT RTSKRTSTKTETS" XX SQ Sequence 2741 BP; 756 A; 590 C; 601 G; 794 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg acctcaacca atgaaattcg ggctacatgg 60 cttctatact gcatgtggac caataaatag acttgcccac caagttttgg atccacaaac 120 atgtgggatc cattattgca cgaatttcca gaaagcgttc atggtctaag gtgcatgcta 180 gctgtaaaat atctccaaga gatagagaag aactattccc cagacacagt cggctacgat 240 cttgtccgag atctgattct tgttcttcga gcaaagaact atggcgaagc gaccagcaga 300 tatcatcatt tcaacgcccg catcgaaagt acgccgacgt ctcaacttcg acagccccta 360 tggagctcgt gcagttgtcc ccattgcccg cgtcacaaaa gcaaaggcat ggaccaacag 420 gccgatgaac agaaaaccca ggatgtacag aatgtataga agtcccgacg tgccaagggg 480 ctgtgaaggc ccctgcaaag tgcagtcttt tgaatcgagg cacgatgtat ctcatatcgg 540 taaagtcatg tgtgttagtg atgttacccg aggaaccgga ctcacacatc gcgtagggaa 600 gcgattctgt gtgaaatctg tctacgtgct gggaaagata tggatggatg aaaacatcaa 660 gacgaaaaac catactaaca gtgtcatgtt ttttttagtt cgtgaccgtc gtcctacagg 720 aaccccgcag gatttcgggg aagtgtttaa tatgtttgac aatgaaccga gcacagcaac 780 ggtgaagaac atgcatcgtg atcgttatca agtcttacgg aagtggcatg caactgtgac 840 cggaggaaca tacgcatgta gggagcaagc attagttagg aagtttgtta gggttaataa 900 ttatgttgtt tataatcaac aagaggccgg taagtatgag aatcatactg aaaacgcatt 960 aatgttgtat atggcctgta ctcacgcatc aaatcctgta tatgctactt tgaaaatccg 1020 gatctacttt tatgattcgg tcacaaatta ataaatatct agttttatat catatgaagt 1080 caatacatca attgttcgct ccaacacatt atccaataca tgataaactg ctcttattac 1140 attataaatt cctatgacac ctaacatatc caggtactta aggacctggg ttttgaagac 1200 tctcaagaaa atcccaatct gagggcgtaa gcccgtccag attttgaaag ttagaaaaca 1260 cttgtgaagt cccagggctt tccgcaggtt gtggttgaac tgtatttgaa tcgttattat 1320 gtcttcctgt gttagccagg gcctgctgtc gtgtttcaaa attttgaaat acaggggatt 1380 tcgaatttcc caggtatata cgccactctc tgctcgatcc acagtgatgt attcccctgt 1440 gcgtgaatcc gtgatcatgg cagttgatcg atgtgtaata cgaacaacca cactgtagat 1500 caactcgcct cctgcgaatg ctcttcttct tcttctgggg gagcgatgtt ttcgcgaccg 1560 gaatagagtg gttcctggag tgtgatgaag actgcattct tgattgtcca ctgcttcagt 1620 gctgcatttt tttcttcatc cagatattcc ttatagctgc tgtttggacc tttattgcac 1680 aggaagatag tgggaattcc acctttaatc atgaccggct ttccgtactt cgtgttgctt 1740 tgccagtcac gctgggcccc catgaattct ttaaaatgct ttagatagtg gggatcaacg 1800 tcatcaatga cgttgtacca ggcatcattg ctatacacct ttgggctcag atcaagatgt 1860 ccacacaagt aattgtgtgg tcctaagcag cgagcccaca ttgttttgcc tgtcctacta 1920 tcaccctcaa tcacaatact catcggtcta aaaggccgcg cagcggcaca caccacattc 1980 gacgagaccc aatcgacgag ttctggcgga actctgtcga aggatgaaat tgaaaatgga 2040 gaaacataaa tctcagaacg aggttgaaaa atgcgatcta aatttgtaat taaattgtga 2100 aactgcagaa cataatcctt tggtgcaaat tcctttaata ctttcaacgc ctcatcttta 2160 tttcctgtgt taatcgcttg agcatatgca tcgtttgctg ttttctgacc accacgagca 2220 gatcgtccat cgatctggaa aacaccccac tctaggacgt ctccgtcttt gtcgatgtac 2280 gctttgacgt ccgatgctga tttagctccc tgaatgttcg gatggaaatg tgctgaccga 2340 cttggggaca ccaagtcgaa gaatctgtta tttttgcatt ggaattttcc ttcgaattgg 2400 ataagaatat ggatatgcgg tgacccatcc tcatgaagct ctcgacagat cttgatgaat 2460 ttcttcgaag tgggggtttc tagggtttgc aattgggaaa gtgcctcttc ctttgtaaga 2520 gagcactttg gatatgtgag gaagtagttt tttgcattta ttctaaaacg acttggcgga 2580 gccataaaac ttgtcgtttc gatccggtgt ctctcaactt tctctatgta attggtgtct 2640 ggagtcccat atataggtaa gacaccatat ggcataattg taattttgaa aagaaaatta 2700 ctttaattca aattccttaa agcggccatt cgtataatat t 2741 //