Dbfetch
ID HQ264138; SV 1; circular; genomic DNA; STD; VRL; 5514 BP. XX AC HQ264138; XX DT 30-JUN-2011 (Rel. 109, Created) DT 30-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Microvirus CA82, complete genome. XX KW . XX OS Microviridae phi-CA82 OC Viruses; Microviridae; unclassified Microviridae. XX RN [1] RC Publication Status: Online-Only RP 1-5514 RX PUBMED; 21714899. RA Zsak L., Day J.M., Oakley B.B., Seal B.S.; RT "The complete genome sequence and genetic analysis of phiCA82 a novel RT uncultured microphage from the turkey gastrointestinal system"; RL Virol J 8:331-331(2011). XX RN [2] RP 1-5514 RA Zsak L., Day J.M., Seal B.S.; RT ; RL Submitted (16-SEP-2010) to the INSDC. RL Southeast Poultry Research Laboratory, USDA/ARS, 934 College Station Road, RL Athens, GA 30677, USA XX DR MD5; 23d193dbdf4d7dbf28eaea2b79bec1c4. DR EuropePMC; PMC3135560; 21714899. DR EuropePMC; PMC3236047. XX FH Key Location/Qualifiers FH FT source 1..5514 FT /organism="Microviridae phi-CA82" FT /strain="CA82" FT /mol_type="genomic DNA" FT /country="USA" FT /isolation_source="turkey" FT /db_xref="taxon:913970" FT gene join(5409..5514,1..53) FT /gene="p10" FT CDS join(5409..5514,1..53) FT /codon_start=1 FT /transl_table=11 FT /gene="p10" FT /product="putative DNA binding protein" FT /db_xref="UniProtKB/TrEMBL:F8RW81" FT /protein_id="ADP89816.1" FT /translation="MNKANSQYIKATNYNFSEAIGTDPELMQRSTFMRNNAYATGFQCR FT IMYPDIH" FT gene 1..1698 FT /gene="VP1" FT CDS 1..1698 FT /codon_start=1 FT /transl_table=11 FT /gene="VP1" FT /product="viral coat protein VP1" FT /db_xref="GOA:F8RW82" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR037002" FT /db_xref="UniProtKB/TrEMBL:F8RW82" FT /protein_id="ADP89807.1" FT /translation="MHMRPGFNAGLCIPIYIEEILPNDTVEMNVNMALRMQTLATVPYD FT NLDLDLYWFYAPNRILWDGWKQFCGESKSAWLDKTPLRVPVLKTSGFANPDDGIGTVWD FT YFGLPLIKETTDKSKRIAINRLPFNMYAKVWNDWFRDTNYQEEALIDYGNTDVTYDKSD FT PAKGGKPLSANKYHDYFTTCLPSPQRGESVSLLDGIRNSVLPVRAVGTELEGDNELGIL FT WGLYNKNNEQNFLPDAWKWYDMTYQADNSAFLHQYYNKASGTSTAPTDKATMTPANLGV FT DIRGADYNSNKSFVDAMNLTELRKSIAKQHIAEVSARCGNRYENFLLGFFGVSAPDIET FT GRTELLGINHMTLNISEVVQTSASEEGSTPQGNISGRSLTNMDNPHAFTKSFTEHGWLM FT CIAVARYNHSYSQGIEKKWTRYKLEDYYMPEYANMGDVPVYLSEIYATNANAQNPDNLT FT GSDGKNPQEDIWGYQEYGAEYKYSPNKVTGSLRPDIKGGLSPWTWCDNYDSEPTNGADW FT IKEDANNINRSLSIQPTAKVPQLFGNFYFSNKHTRMMPVHSVPGLERI" FT gene 1724..2428 FT /gene="VP2" FT CDS 1724..2428 FT /codon_start=1 FT /transl_table=11 FT /gene="VP2" FT /product="structural protein VP2" FT /db_xref="UniProtKB/TrEMBL:F8RW83" FT /protein_id="ADP89808.1" FT /translation="MSEYTQWMTAQADKQNKWNAEQTEKSNQFNAQEAQKNRDWQEQMS FT NTALQRKMQDAEKAGLNPIFALNAQGASTTSGATASADSSKPATDIINAMTSYTNAQEQ FT NRMQRELALQENRVKLQIAQMQMQAELQRARLATNAQMATAYASASASRYGADRSYNAS FT RYSSDTSYKNVQSQNENNILTKGVNPTGVLYNNKEFQRRTNNAINKGFNLWDNIKAGAK FT KAWKKVRKYWGF" FT gene 2623..3684 FT /gene="p3" FT CDS 2623..3684 FT /codon_start=1 FT /transl_table=11 FT /gene="p3" FT /product="DNA replication initiation protein" FT /db_xref="UniProtKB/TrEMBL:F8RW84" FT /protein_id="ADP89809.1" FT /translation="MTIQHCLMPKRIFKIGKMIKKDGSEGTEILYRSYDTKYVYCQNGK FT WINVSRREDPHEVYKLRMKYNLIDGITVPCGRCHYCKLIKSYDRAKQAWCDSRYFKYQY FT FITITYDDDNLPMQDFCNSDGVIERVPVLNKAEIRHFKEILRDRARKRHYQNIEYMLSG FT EYGEQNGRPHYHMILLTDDPEIELSLYPAGRTRTGYNLYGSTALDEIWDKKGIIKLSRA FT STACMAYTARYTMKKAYKGNEKAERMKYLNYQQEFITSTPGIGHRYLKEHLDQILEKPT FT LQMPQTKGVSLPKYFINKLEKMGYSEWVQNLKEDNIERQIECIKDTENLHNMHYDEFVK FT HQQFKITKKQYEM" FT gene 3674..3889 FT /gene="p4" FT CDS 3674..3889 FT /codon_start=1 FT /transl_table=11 FT /gene="p4" FT /product="putative non-structural protein" FT /db_xref="GOA:F8RW85" FT /db_xref="UniProtKB/TrEMBL:F8RW85" FT /protein_id="ADP89810.1" FT /translation="MKCNVDNSTVIHTLSTRFPPNYQHGKPLNHKGLKRFFTVSTLLLL FT LLRKYITIYIYNKHSRQKVTSDNRNV" FT gene 3997..4233 FT /gene="p5" FT CDS 3997..4233 FT /codon_start=1 FT /transl_table=11 FT /gene="p5" FT /product="hypothetical protein" FT /db_xref="GOA:F8RW86" FT /db_xref="UniProtKB/TrEMBL:F8RW86" FT /protein_id="ADP89811.1" FT /translation="MSQKGGNVSVNEIIQLVSSLGFPIVCCFVCFGYINKKDENHKYEI FT DNLRKVIEQNTIVTEKLVSAIERGDAIERKENK" FT gene 4205..4324 FT /gene="p6" FT CDS 4205..4324 FT /codon_start=1 FT /transl_table=11 FT /gene="p6" FT /product="putative DNA binding protein" FT /db_xref="UniProtKB/TrEMBL:F8RW87" FT /protein_id="ADP89812.1" FT /translation="MQLRGKKTSKNDAKKFARTANKTNKLNKPKLLPRGGTRL" FT gene 4355..4597 FT /gene="p7" FT CDS 4355..4597 FT /codon_start=1 FT /transl_table=11 FT /gene="p7" FT /product="non-structural protein" FT /db_xref="UniProtKB/TrEMBL:F8RW88" FT /protein_id="ADP89813.1" FT /translation="MSYGLTIKKLNKAIYIKNTYDIADAMFECGMTWSDISGIDITDTK FT GINKDNICKQYNKAVYLSDHAGQYRRQNHLGHHSS" FT gene 4649..4891 FT /gene="p8" FT CDS 4649..4891 FT /codon_start=1 FT /transl_table=11 FT /gene="p8" FT /product="putative DNA maturation protein" FT /db_xref="UniProtKB/TrEMBL:F8RW89" FT /protein_id="ADP89814.1" FT /translation="MSIKQTSTKGFDPIGIYGIYDKMSGKIIGIHTFANDLTAKTNIVK FT SMEKDLGDIRLVKIAETDLYDPENTVATYTDIPLN" FT gene 4969..5322 FT /gene="p9" FT CDS 4969..5322 FT /codon_start=1 FT /transl_table=11 FT /gene="p9" FT /product="putative cell lysis protein" FT /db_xref="UniProtKB/TrEMBL:F8RW90" FT /protein_id="ADP89815.1" FT /translation="MLFSWQETSYEPNSKSNKGSRLAKVYKVKKDPLTGEDSLEVKETY FT DYQDYINSFSENADPVTLMERVKHGEIAPWNGENTMDLSQLPENVREIAEYMDYHVTRN FT TNEFMKNHRKSET" XX SQ Sequence 5514 BP; 2129 A; 1081 C; 1109 G; 1195 T; 0 other; atgcatatgc gaccgggttt caatgcagga ttatgtatcc cgatatacat tgaggaaata 60 cttccgaacg atacagttga gatgaatgtc aacatggcat taagaatgca gacattagca 120 acagtaccgt atgacaattt ggatctggat ctgtactggt tctatgcccc aaacagaata 180 ttatgggatg gatggaaaca gttttgtgga gaatccaaat ccgcatggct ggacaaaacg 240 cctctgagag ttcctgttct gaaaacatct ggattcgcca acccagatga cggtatcgga 300 acagtatggg attatttcgg actgcctcta atcaaagaga ctacagacaa atcaaaaaga 360 atagcgatca acaggctgcc gtttaacatg tacgctaagg tatggaacga ctggtttcga 420 gacacaaact atcaggaaga agccctgatt gactacggaa acacagacgt aacatatgat 480 aaatcagatc cagcaaaagg cggtaaacca ctctcagcaa ataaatacca tgattacttt 540 acgacatgcc tgccgtcacc tcaaagaggt gaatcagtaa gtctgctgga tggtatccgt 600 aactcagtat taccggtcag agcagttgga actgagcttg aaggagataa cgaactggga 660 atactctggg gattgtataa caagaacaac gaacagaatt tcctgccgga tgcatggaaa 720 tggtatgata tgacatatca ggccgacaac agtgcatttt tacatcaata ttataacaaa 780 gcttccggta caagtacagc tccaactgac aaagcaacaa tgacaccggc taacttagga 840 gttgatatca gaggtgctga ctacaactca aacaaatcat ttgtggacgc aatgaatcta 900 acagagttaa gaaagagtat cgcaaaacag cacattgcag aagtctctgc aagatgcggt 960 aacaggtacg agaatttcct tctcggcttc tttggtgtat cagcgccgga tatcgaaaca 1020 ggaagaactg aactactcgg tatcaaccat atgacactca atatcagcga agtagtacag 1080 acaagtgcaa gtgaggaagg ttcaactccg cagggtaaca tatctggaag gtcactgaca 1140 aatatggaca acccacacgc ttttaccaaa tcgttcacgg aacacggctg gttaatgtgc 1200 attgcagtag caagatataa ccacagctac agccagggaa tcgaaaaaaa gtggacacga 1260 tataaactgg aagactacta tatgccggaa tatgcaaata tgggtgacgt tccggtatat 1320 ctttcagaaa tatacgcaac gaacgcgaat gcacagaatc cggacaatct aacaggttca 1380 gacggaaaaa accctcaaga ggatatctgg ggatatcagg aatacggtgc ggaatataaa 1440 tattcaccga ataaagtaac aggatcgtta agaccggata tcaaaggcgg cctttcacca 1500 tggacatggt gtgacaacta cgattctgaa cctaccaacg gtgcggactg gataaaagaa 1560 gatgcaaaca acatcaacag atcattatcg atacagccaa cagctaaagt accacagctt 1620 ttcggaaact tctatttctc gaacaagcat acgagaatga tgccggttca cagtgttcca 1680 ggattggaga gaatctaaca cattgctcaa aggtggtgaa taaatgtcag agtacacaca 1740 atggatgacg gcacaagccg acaagcaaaa taagtggaat gcagagcaga cagaaaagtc 1800 taatcagttc aatgcacaag aagctcagaa gaacagagac tggcaagaac aaatgtctaa 1860 tacagctctg caacgtaaaa tgcaggatgc tgaaaaagca ggacttaatc ccattttcgc 1920 actaaatgca caaggagcaa gcaccacatc aggtgctaca gcttcagcag attcctcaaa 1980 gcctgcaaca gatatcatta atgcaatgac atcttacact aatgctcaag agcagaacag 2040 aatgcagaga gagctagctc tacaggaaaa cagagtaaaa ttacagatag cacagatgca 2100 gatgcaagca gaacttcaaa gagcgagatt agcaaccaac gcacaaatgg caacagcata 2160 cgcatcagca tcagcatcaa gatacggagc agatcggagt tacaatgcat caagatacag 2220 ctcggataca tcttataaaa acgtgcaatc acagaatgag aacaacatac ttacgaaagg 2280 tgtaaacccg accggcgtct tgtataacaa taaagaattc caaagaagaa ccaacaacgc 2340 catcaacaaa ggttttaatc tgtgggacaa cataaaagct ggagcaaaaa aagcttggaa 2400 aaaagtgcgt aaatactggg gattctaatt cccacggaat cgctattaga acaagagggt 2460 tcgcgattcc gtaccattaa tcaagaggag attgcaagac catagtcttt caatctcctc 2520 aaacaatatt atgagcgtaa acttccggca atcaagggca agctacacgg tcagaccacg 2580 gtctgaccgc ccttgacagc ctatttttaa aaaggaggat aaatgacgat acaacactgt 2640 ttaatgccga aaagaatatt taaaatcggt aaaatgataa agaaagatgg atcagaagga 2700 acagaaatac tttacagatc atatgacaca aaatatgtat attgtcagaa tggtaaatgg 2760 ataaatgtat cacgtagaga ggatccacat gaagtataca agctaagaat gaaatacaac 2820 ctaatagacg gaataacagt accatgcggt agatgccatt actgcaaact aatcaaatca 2880 tacgatagag caaaacaagc atggtgcgac agtagatact ttaagtatca atatttcatc 2940 acgataactt atgacgatga taacctgcct atgcaagatt tctgcaactc cgatggtgta 3000 atagaaagag ttccagtttt aaacaaagca gaaattagac atttcaagga aatattaaga 3060 gatcgggccc gcaagagaca ctatcaaaat atagaataca tgctatctgg tgaatacggt 3120 gaacaaaatg gacgaccaca ctatcacatg atactactaa ctgacgatcc ggagatagaa 3180 ttgtcattat atcctgctgg aagaaccaga acaggataca acctatacgg tagcacagcc 3240 cttgatgaaa tatgggataa gaaaggcatt atcaagcttt ctagggcttc tacggcgtgc 3300 atggcatata cagcaaggta cacgatgaaa aaggcttata aaggcaatga gaaagccgag 3360 aggatgaaat atcttaacta ccaacaagag ttcatcacat cgacacctgg aataggtcac 3420 agatacctaa aagaacacct agatcagata ctagaaaaac caactcttca aatgccacaa 3480 acaaaaggcg tatcattgcc gaagtacttc atcaataaac ttgagaaaat gggatacagc 3540 gaatgggtac aaaatctaaa agaagataac atagaaagac aaattgaatg tataaaggat 3600 acagaaaatc tgcataatat gcattatgat gagttcgtga aacaccaaca attcaaaatc 3660 acaaagaagc agtatgaaat gtaatgtgga taactcgaca gttatccaca cgttatccac 3720 acgttttccc cccaattatc aacacggaaa accgctcaac cacaagggtt tgaaacggtt 3780 tttcacagtt tcaacactac tactactact actacggaaa tatattacta tctatatata 3840 taataagcac tctcgacaaa aggttacatc agataacaga aatgtataaa attctgcata 3900 aaatgtttca cgtgaaacat cttatattca taaaaaattc ttaaatatat tgaaaaatta 3960 tcaaatatag gctatgataa agatgcacca agaggtatgt cacagaaagg aggtaacgtg 4020 tcagtaaatg aaataattca gttagtcagt tctctagggt ttcccatcgt ttgttgtttc 4080 gtctgctttg ggtacataaa caaaaaagat gaaaaccaca aatatgaaat tgataacctt 4140 agaaaggtga ttgaacagaa cacaatcgtc accgaaaagc tggtatcagc aatagaaagg 4200 ggggatgcaa ttgagaggaa agaaaacaag taaaaacgat gcaaagaagt tcgcgcgaac 4260 ggcaaacaaa acaaacaagc ttaacaaacc aaagctactg cctagaggcg gtacaaggtt 4320 atgatctaac gatcaaccaa aaggaggtaa gattatgagt tacggattaa caataaaaaa 4380 attgaacaaa gcaatctaca tcaaaaacac atacgacatt gcagacgcca tgttcgaatg 4440 cgggatgaca tggagcgaca tatcaggtat cgacatcaca gacacaaaag gaatcaataa 4500 agataacatc tgtaaacagt acaacaaagc tgtctattta tcagatcatg ccggacaata 4560 tcgcagacaa aatcatctgg gacaccatag ctcataatct gatgaacatc tacaaagaca 4620 cgataagaag aaagagaggt aaaatcttat gagcatcaaa cagacatcca caaaaggctt 4680 cgacccgatc ggtatctatg gaatttatga caaaatgtca gggaaaatca tcggcatcca 4740 cacattcgca aatgatctga cggcaaaaac aaacatcgtc aaaagcatgg agaaagacct 4800 gggagacatc cgcctggtca aaatcgccga aactgacctg tacgatccgg aaaacacagt 4860 ggctacatac acagatattc cgcttaatta attcatcagc tacacatact cttttacatt 4920 attgcgatta agacggcata tgccgtcttt tttagaaagg agacattaat gttattttca 4980 tggcaagaaa catcatatga accaaattca aaatcgaata aaggttcaag attagcaaaa 5040 gtatacaaag tgaaaaaaga ccctttgaca ggagaggatt ctcttgaagt caaagaaact 5100 tacgactatc aggactacat caacagtttc agtgaaaacg ctgacccggt aacactcatg 5160 gaaagagtaa aacacggcga aatagcaccg tggaacggtg aaaatacaat ggatctgtca 5220 cagctaccag aaaatgtcag ggaaatcgct gaatacatgg attaccacgt aacaagaaat 5280 acaaatgaat tcatgaagaa ccatagaaag agcgaaactt gataaagaaa gagcagagct 5340 gttcaatgca caaaaaaaca tgttaaaagc aaatcctgaa gtacctgaag taaaggagga 5400 taagaaagat gaataaagca aattctcagt acatcaaagc aacaaactac aatttttcag 5460 aagcaatagg cacagatccg gaattaatgc aacgttcaac attcatgcgg aaca 5514 //