ID HQ259079; SV 1; linear; genomic RNA; STD; VRL; 3111 BP. XX AC HQ259079; XX DT 26-JAN-2011 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 1) XX DE Penaeus vannamei nodavirus strain Belize segment RNA1 RNA-dependent RNA DE polymerase and B2-like protein genes, complete cds. XX KW . XX OS Penaeus vannamei nodavirus OC Viruses; Riboviria; Nodaviridae; unclassified Nodaviridae. XX RN [1] RP 1-3111 RX PUBMED; 21790065. RA Tang K., Pantoja C., Redman R., Navarro S., Lightner D.; RT "Ultrastructural and sequence characterization of Penaeus vannamei RT nodavirus (PvNV) from Belize"; RL Dis. Aquat. Org. 94(3):179-187(2011). XX RN [2] RP 1-3111 RA Tang K.F.J., Navarro S.A., Lightner D.V.; RT ; RL Submitted (14-SEP-2010) to the INSDC. RL Veterinary Science and Microbiology, University of Arizona, 1117, East RL Lowell Street, Tucson, AZ 85721, USA XX DR MD5; c7b606bccd29112cd14702ed77b49ca8. XX FH Key Location/Qualifiers FH FT source 1..3111 FT /organism="Penaeus vannamei nodavirus" FT /segment="RNA1" FT /host="Penaeus vannamei" FT /strain="Belize" FT /mol_type="genomic RNA" FT /country="Belize" FT /collection_date="2005" FT /db_xref="taxon:430911" FT CDS 7..3108 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:E9MW23" FT /db_xref="InterPro:IPR001205" FT /db_xref="UniProtKB/TrEMBL:E9MW23" FT /protein_id="ADV74764.1" FT /translation="MKCNNLLLGVELPVCLQSRLGMVLVTGIAMVYLLLYIVTYAVIHG FT PRVSRRLVSYVVIGPYEAITTSRPAMALQRAMVDMTRRDIRSDWYPLQSLLDIKPFRIN FT DNGHKVSGAVRDSARNLITNAVSAMGFDKYEVSPGGHTVDEQFASHRHYAVNDLHRSSG FT DDPIRENNVLVFIDNDYYLREPSMYFSNPNPFILFTFQPITVAGYDGDVRYTISNNEVD FT YRVDGGDRWHHKVWNWCDYGEFICFPMKPRWFTFDWLISCLGVQKVTYQKIHHSRPWVD FT CPNRALVWGVPQFTSYIISWLPMELHARNLTRINYQCGARPGWNCLVDHTKGKLTASIG FT REGNDSHVEISKEDLDIVLGLSTQQSVTSRLIAMGYKQPQTLALVCQFYSGNANSTLDS FT HIVARPSQPPVHWPIASEIDIPTTSFRNYSNPVVCCSNLCPQLKRWEVLSNSLEHRVTM FT VNNTKVPNVRIARLAEEFVRLVVPENGVGVPYSLEETREQLDKPTQVNAINQIWETEDV FT EVRRLIEAFVKNEPTNKPGRIISSFYDPRFLLKFSSYTLAFRDQVLHAEHNSHWFCPGK FT TPSELADKVCEYIQSIGTPAEGDFSNFDGRVSQWCQEHVMNAVYHRWFNKMFTTDLRNY FT TSMLVSCPARAKRFGFQYEPGVGVKSGSPTTCDLNSVLNNFTQYAAIRITKRDLSPSEA FT FQLTGLSFGDDSMFDAQYQRAWNYVVDQLGMELKIEPFDLSKGITFLARVFPDPYSTNT FT SFQDPMRTWRKLHMSARVGVPVESAALDRVSGYLVTDKYSPVTSEYCKMIERCYMPTGE FT DIVRRRQRKDCDRKKPYWMVSGGAWPQAEGDYELMLRVTATRTGFEVPVLINKINEFRN FT VHDPWDITPLDYEEPSPYKHTLDCDGQPVDAVDQRQYQDERKSVNLRACEAAPPGSGAG FT DSGGGQGDQQPASMPGPSGHKRPRQLQRVSGKTGDNLLQGDRQPAVKTKGRRRPKRGDR FT DPRDGGRPGNGQTTNTRAQPARGGNGKARTPGNSSRSRPHLVVS" FT CDS 2708..3103 FT /codon_start=1 FT /product="B2-like protein" FT /db_xref="InterPro:IPR024377" FT /db_xref="InterPro:IPR037209" FT /db_xref="UniProtKB/TrEMBL:E9MW24" FT /protein_id="ADV74765.1" FT /translation="MQWTNVNIKMNANQSTYELVKQLPQDLGQVIQVVVRAINSLPACQ FT DPRVIKDLDNYKGCLAKLETTCFRATDSLLSKPRVAAALKGEIVTPGMEDALGTAKQQI FT LELSRLVEAMERPELPAIPPVADLISW" XX SQ Sequence 3111 BP; 810 A; 688 C; 757 G; 856 T; 0 other; ctcgtgatga agtgtaataa tcttctcctc ggtgtggaac tacccgtgtg cttgcaatcg 60 cgcttgggca tggtgttagt taccggaatc gccatggttt acttgttgct gtacattgta 120 acgtacgccg taatccatgg acctcgagtc agccgaagat tagtctccta tgtggtgatt 180 ggaccatatg aggctatcac gacaagccga cccgccatgg ccttgcaaag ggccatggtt 240 gatatgacca gaagggacat tcgttctgat tggtatccat tgcaatccct actagatatt 300 aaacctttta gaatcaacga caatggacat aaggtttctg gtgctgttag ggattctgct 360 agaaatttaa taactaatgc agttagtgca atgggttttg acaagtatga agtctcacct 420 ggtggccata ccgtcgatga acagtttgca agtcatcgac attatgccgt taacgattta 480 catcgaagta gtggtgacga tccgattaga gagaacaacg tgttggtatt catagataat 540 gactactatt tacgtgaacc gtcgatgtat ttctcaaatc ccaacccatt catattgttt 600 acctttcaac ccatcacagt tgctggctat gatggtgatg ttagatatac catctctaac 660 aatgaggtag actatcgtgt ggatggtgga gatcgttggc atcataaggt gtggaactgg 720 tgtgattatg gggagttcat ctgtttcccc atgaagccaa ggtggtttac ttttgattgg 780 ctaattagct gccttggtgt tcagaaagtc acctatcaga agattcacca ttcacgtccc 840 tgggtggatt gccctaacag ggctttggtt tggggagtac cacagtttac tagttacata 900 atttcctggc tacctatgga gttacatgca aggaatttaa ctagaattaa ttatcaatgt 960 ggtgctcgtc ctggttggaa ttgccttgtt gatcatacta agggcaaact cactgcgagt 1020 attggtcgtg agggcaacga ctctcatgtt gagatttcca aggaggatct tgacattgtc 1080 ctcgggctta gtactcaaca gtctgttaca tccagactta ttgcaatggg ttataaacaa 1140 ccacaaacct tagccttggt gtgtcagttc tacagtggta atgccaatag tacattggat 1200 tcacacattg tagcccgacc atctcaacca cccgtccact ggccaatagc atccgagatc 1260 gatattccga caacgtcctt caggaactac tccaaccctg ttgtgtgttg cagtaatctt 1320 tgtccccaac taaagcgttg ggaggtcctt agcaactcgc tagagcacag ggttacgatg 1380 gttaataata ccaaggtacc aaatgttcgc atcgctcgac tagctgaaga atttgtaagg 1440 ttagttgtgc ccgaaaatgg tgtgggtgta ccttatagtc ttgaagagac gcgcgaacaa 1500 ctggataagc caacgcaagt caatgctatc aatcaaatct gggaaacgga ggacgttgag 1560 gttcgcaggt tgattgaggc atttgttaag aatgaaccaa ctaataagcc tgggcgtata 1620 atatcttcat tttatgatcc taggtttttg ttgaagtttt cttcttatac acttgctttc 1680 cgggatcaag ttcttcatgc tgaacacaat agccactggt tttgccctgg gaaaacaccc 1740 tctgagctag ccgataaagt atgcgagtat attcagtcca ttggaacccc agctgaaggt 1800 gatttcagta attttgatgg tcgtgtatca caatggtgcc aggagcacgt gatgaatgcg 1860 gtctatcata ggtggttcaa taagatgttt acgactgacc ttcgcaatta tacctccatg 1920 ttggttagct gtcctgctag agcaaaacgc tttggttttc agtatgaacc cggagttggc 1980 gttaagagtg gtagtcctac aacttgtgac ttaaactctg ttcttaataa ctttacccag 2040 tacgcggcca ttcggattac aaagcgcgat ctatctcctt ctgaagcctt ccagctgacc 2100 ggacttagtt tcggtgatga ttcaatgttc gatgctcaat atcaacgagc ttggaactac 2160 gtggttgatc agcttggaat ggaacttaag attgagccgt ttgacctcag taaaggtatc 2220 actttccttg cgcgcgtatt tcctgatcct tattctacca atacgagttt tcaggatcca 2280 atgcggacat ggcgaaagtt gcacatgtcc gcgcgcgttg gtgttcctgt cgaatcagca 2340 gctcttgatc gtgttagtgg ctacttagtt actgacaagt attccccagt caccagtgaa 2400 tactgtaaga tgattgagag gtgctatatg cctacaggtg aagacatcgt tcgaagacgc 2460 caacgtaagg attgtgaccg aaagaaacct tactggatgg ttagcggggg tgcttggccc 2520 caggctgagg gcgattatga attgatgtta cgcgtgacgg cgacgcgaac tggtttcgaa 2580 gttcctgtgt taattaataa gatcaacgaa tttcgaaacg ttcatgaccc ctgggacatc 2640 actcctcttg attatgagga gccatcaccc tacaaacata ctttggattg tgatggacaa 2700 ccagttgatg cagtggacca acgtcaatat caagatgaac gcaaatcagt caacctacga 2760 gcttgtgaag cagctccccc aggatctggg gcaggtgatt caggtggtgg tcagggcgat 2820 caacagcctg ccagcatgcc aggaccctcg ggtcataaaa gacctcgaca actacaaagg 2880 gtgtctggca aaactggaga caacctgctt cagggcgacc gacagcctgc tgtcaaaacc 2940 aagggtcgcc gccgccctaa aaggggagat cgtgacccca gggatggagg acgccctggg 3000 aacggccaaa caacaaatac tcgagctcag ccggctcgtg gaggcaatgg aaaggccaga 3060 actcccggca attcctcccg tagccgacct catctcgtgg taagctagcc g 3111 //