ID HQ257375; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC HQ257375; XX DT 16-MAR-2011 (Rel. 108, Created) DT 26-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Radish leaf curl virus-Hajipur [IN:Bih06:10] segment DNA-A, complete DE sequence. XX KW . XX OS Radish leaf curl virus-Hajipur [IN:Bih06:10] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RA Kumar J., Roy J.K., Tuli R.; RT "Radish leaf curl virus infecting okra in India"; RL Unpublished. XX RN [2] RP 1-2752 RA Kumar J., Roy J.K., Tuli R.; RT ; RL Submitted (12-SEP-2010) to the INSDC. RL Agri-Biotechnology, National Agri-Food Biotechnology Institute, C-127, RL Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab 160071, India XX DR MD5; 765e2684c7a6401bee3fd81a93b250ac. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Radish leaf curl virus-Hajipur [IN:Bih06:10]" FT /segment="DNA-A" FT /host="okra" FT /isolate="IN:Bih06:10" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaf tissue" FT /collection_date="Sep-2009" FT /db_xref="taxon:1325579" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:F2WUA6" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:F2WUA6" FT /protein_id="ADZ45280.1" FT /translation="MWDPLLNEFPETVHGFGCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTSRLNFDSPYVRRAAAPIVRVTKAKAWANRPMDR FT KPRMYRMYRSPDVP" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F2WUA7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F2WUA7" FT /protein_id="ADZ45281.1" FT /translation="MSKRPADIIISTPASKVRRVSTSTAHMCAVLLPPLSASPKQKHGR FT TDPWTESPGCTGCTEVQMFRRGCEGPCKVQSLSPDMIFSIYGKVMCVSDATRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMARTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1074..1481) FT /gene="AC3" FT CDS complement(1074..1481) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:F2WUA8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F2WUA8" FT /protein_id="ADZ45282.1" FT /translation="MDSRTGELITATQAESGVYIWTVKNPLYFKISQHHERPFLSNNDI FT LTIQVQFNYNLRKALGIHQCFLRIWTRLSRPHSLRLVVSSGSLRPKCLSIYITSELSVL FT IMYWSSCSCIMECIRACVYVDQSSSIKFNIY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="UniProtKB/TrEMBL:F2WUA9" FT /protein_id="ADZ45283.1" FT /translation="MQNSSPSPSRCTQVPIKVQHRIAKKRPVRIRSSLRLLLLFWTCLR FT ITWIHAQGNSSLQLRQRVACIFGRSKIPSISRYPNTTRDHFYPTTTYSPYKSSSTTTCG FT KRWGYTSVFYESGLVCLDLTASDWSFLPGL" FT gene complement(1530..2606) FT /gene="AC1" FT CDS complement(1530..2606) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:F2WUB0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F2WUB0" FT /protein_id="ADZ45284.1" FT /translation="MAPPKQFQIYAKNYFLTYPKCSLTKEEALSQLQNLQTPVNKKYIK FT ICRELHENGEPHLRVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRIIKELAPKDYVLQFH FT NLNANLDRIYTPPLEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARANRPISVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT LSNTTGSPCKIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWALKNAEFFTLTEPLY FT SGTHQSPAQNSQEETSSH" FT gene complement(2147..2455) FT /gene="AC4" FT CDS complement(2147..2455) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulator protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F2WUB1" FT /protein_id="ADZ45285.1" FT /translation="MKMGNLIFACSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELN FT QAPMSSPIWRRTETPSTGESFRSTDDLLEGDNRQPTTLTPQRLTQAVSQRLLESLRS" XX SQ Sequence 2752 BP; 738 A; 547 C; 651 G; 816 T; 0 other; accggatggc cgcgattttt tttgtggccc ccacaaagca ctaactgaca atgacatgtg 60 gtccaatgag aatcgttcct cgtagcctaa ttgtttgtgt ggtcccctct ataaacttag 120 tgcgcaagtt gtgttttcca ttcaatatgt gggatccgtt attgaatgag tttcccgaaa 180 ccgttcacgg ttttgggtgt atgttagcag ttaaatatct gcagttagta gaaaatacgt 240 attccccaga tactctggga tacgatttaa ttagggattt gatttcagta ataagggcca 300 ggaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcttc gaaggtacgt 360 cgcgtctcaa cttcgacagc ccatatgtgc gccgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcg aacagaccca tggacagaaa gcccaggatg tacaggatgt 480 acagaagtcc agatgttccg tagaggatgt gaaggcccat gtaaggttca gtccttgagt 540 ccagacatga tattcagcat atacggtaaa gtcatgtgtg tcagtgatgc tactcgtgga 600 actgggctta cccatagagt gggtaagaga ttttgtgtga agtctgtgta tgttttgggt 660 aagatatgga tggatgagaa cattaagacc aagaatcaca cgaatagtgt gatgtttttc 720 ttagttagag atcgtagacc agttgataaa cctcaagatt ttggagaggt gtttaacatg 780 tttgataatg agcccagtac ggcgactgtg aagaatgttc atcgtgatag gtatcaagtg 840 ctgcgcaaat ggtatgcaac tgtcaccggt ggacaatacg cttcaaagga acaagctctc 900 gtgaagaagt ttattagggt taataattat gttgtgtata accagcaaga agctggcaag 960 tatgagaatc attctgagaa tgctttaatg ttgtatatgg cgcgtactca cgcctctaac 1020 ccagtgtatg ctactttgaa aatacggatc tacttctatg attccgtgac aaattaataa 1080 atattgaatt ttattgaaga tgattggtct acatatacac atgctctaat acattccata 1140 atacatgagc aactgctcca atacattatt aatactgaca attccgaagt tatgtaaata 1200 cttaagcact tgggtcttaa agacccggaa gaaacgacca atcggaggct gtgaggtcga 1260 gacagacgag tccagattcg tagaaaacac tggtgtatcc ccaacgcttt ccgcaggttg 1320 tagttgaact ggacttgtat ggtgagtatg tcgttgttgg atagaaatgg tctctcgtgg 1380 tgttgggata tcttgaaata gaggggattt ttgaccgtcc aaatatacac gccactctct 1440 gcctgagttg cagtgatgag ttcccctgtg cgtgaatcca tgtgatgcgc aggcaagtcc 1500 aaaatagtaa gagcaaccgc agggaagatc taatgcgaac tggtctcttc ttggctattc 1560 tgtgctggac tttgatgggt acctgagtac aacggctcgg tgagggtgaa gaattctgca 1620 ttctttaatg cccagtcttt tagtgctgaa ttcttttcct catccaagta ctctttatat 1680 gatgatgtcg ggcctggatt gcagaggaag atagtgggaa tcccaccttt aattttgcat 1740 gggcttcccg tagtatttga aagccagtcc ctttgggccc ccatgaattc tttaaagtgc 1800 tttaggtagt ggggatcgac gtcatcaatg atattgtacc aggcatcatt attgtagacc 1860 ttagggctaa ggtctagatg tccacacaaa taattatgtg gtcccagtga cctagcccac 1920 attgtcttcc ctgtcctact atcaccctca atcactacac ttattggtct attggcccgc 1980 gcagcggcac tgacgacgtt ctcggcagcc cattcctcaa gttcttccgg aacttgatca 2040 aaagaagaag aagaaaaagg agaaacataa acctccagag gaggtgtata aatcctatct 2100 aaattagcat ttaaattatg gaattgtaat acataatctt ttggagctaa ctccttaatg 2160 attctaagag cctctgactt actgcctgcg ttaagcgctg cggcgtaagc gtcgttggct 2220 gtctgttgtc cccctctagc agatcgtccg tcgatctgaa actctcccca gtcgagggtg 2280 tctccgtcct tctccatata ggacttgaca tcggagcttg atttagctcc ctgaatgttc 2340 ggatggaaat gtgctgacct ggttggggat acgaggtcga agaatctgtt atttttgcac 2400 ttgtatttgc cttcgaactg gatgagcacg cgaagatgag gttccccatt ttcatgaagc 2460 tctctgcaga ttttaatgta ttttttgttt actggggttt gtaggttttg tagttgggaa 2520 agtgcttcct ctttagtaag ggagcatttg ggataagtaa ggaaataatt tttggcatat 2580 atctgaaatt gtttgggagg agccattgac ttggtcaatc ggtacccaga actagtctta 2640 tggcaattgg tgaacggtac cctatatata gtgggtactg aatggcaata tttgtaatta 2700 tgaaagaaat tcaaaatcct cacgctccaa tcgcggccat ccgtataata tt 2752 //