ID HQ257374; SV 1; circular; genomic DNA; STD; VRL; 2746 BP. XX AC HQ257374; XX DT 16-MAR-2011 (Rel. 108, Created) DT 16-MAR-2011 (Rel. 108, Last updated, Version 1) XX DE Cotton leaf curl Kokhran virus isolate IN:SriBt12:10 segment DNA-A, DE complete sequence. XX KW . XX OS Cotton leaf curl Kokhran virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2746 RA Kumar J., Roy J.K., Tuli R.; RT "Begomovirus associated with cotton showing leaf curl symptom"; RL Unpublished. XX RN [2] RP 1-2746 RA Kumar J., Roy J.K., Tuli R.; RT ; RL Submitted (12-SEP-2010) to the INSDC. RL Agri-Biotechnology, National Agri-Food Biotechnology Institute, C-127, RL Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab 160071, India XX DR MD5; 00ab0db4a393f2f73d054265a3480a61. XX FH Key Location/Qualifiers FH FT source 1..2746 FT /organism="Cotton leaf curl Kokhran virus" FT /segment="DNA-A" FT /isolate="IN:SriBt12:10" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaf tissue" FT /db_xref="taxon:222464" FT gene 184..486 FT /gene="AV2" FT CDS 184..486 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:F2WUA0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F2WUA0" FT /protein_id="ADZ45274.1" FT /translation="MLAVKYLQLVEKTYSPDTLGYDLIRDLILVIRARNYVEATSRYNH FT FHARFEGTPPSQLRQPICEPCCCPHCPRHQSKIMGEQAHEQKAQDVQDVQKSRCS" FT gene 290..1060 FT /gene="AV1" FT CDS 290..1060 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F2WUA1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F2WUA1" FT /protein_id="ADZ45275.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKSWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1057..1461) FT /gene="AC3" FT CDS complement(1057..1461) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:F2WUA2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F2WUA2" FT /protein_id="ADZ45276.1" FT /translation="MDSRTREPITSALAGNVAYIWEVPHPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT gene complement(1202..1606) FT /gene="AC2" FT CDS complement(1202..1606) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:F2WUA3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F2WUA3" FT /protein_id="ADZ45277.1" FT /translation="MQSSSLSKDHCTQLPIKVQHREAKRRNRRRRIDLECACYYNLSIN FT CHNHGFTHKGTHHFSSSRECRIYLGGSTSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP FT EESVGDTQMFHSFPNLDDLTASDWSFLKGI" FT gene complement(1503..2591) FT /gene="AC1" FT CDS complement(1503..2591) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:F2WUA4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F2WUA4" FT /protein_id="ADZ45278.1" FT /translation="MPPKRNGFYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGNKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARPNRPISLVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNQGPNSSYKEFLDEEKNSALKNWALKNAIFITLEGPLY FT SASNQSTAQGSEETQQEEENRS" FT gene complement(2135..2437) FT /gene="AC4" FT CDS complement(2135..2437) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulator protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F2WUA5" FT /protein_id="ADZ45279.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREISRRLLESLRN" XX SQ Sequence 2746 BP; 747 A; 549 C; 619 G; 831 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcgtattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgatcc actgttaaat gagttccccg acaccgttca cggttttagg 180 tgtatgttag cagttaaata tttgcagtta gtagagaaaa cttactctcc tgatacattg 240 ggttacgatt tgataaggga tttaatcctg gtaataaggg ctaggaatta tgtcgaagcg 300 accagcagat ataatcattt ccacgcccgc ttcgaaggta cgccgccgtc tcaacttcga 360 cagcccatat gtgagccgtg ctgctgcccc cattgtccgc gtcaccaaag caaaatcatg 420 ggcgaacagg cccatgaaca gaaagcccag gatgtacagg atgtacagaa gtccagatgt 480 tcctagagga tgtgaaggtc catgtaaggt tcagtcgttt gagtccagac atgatattca 540 gcatataggt aaagtaatgt gtgttagtga tgttactcgt ggtactgggc tgacccatag 600 agttggtaaa agattttgtg ttaagtctgt ttatgtgttg ggtaagatct ggatggatga 660 gaacattaag acgaagaatc acacgaatag tgtgatgttt ttcttggtta gagatcgtag 720 acctgttgat aaacctcaag attttggaga ggtatttaat atgtttgata atgagcccag 780 tacggcgact gtgaagaatg ttcatcgtga taggtatcaa gttctgcgca aatggtatgc 840 aactgtcacc ggtggacaat acgcttcaaa ggaacaagct ctcgtgaaga aatttattag 900 agttaataat tatgttgtgt ataaccagca ggaagctggc aagtatgaga atcattctga 960 gaatgcttta atgttgtata tggcgtgtac tcacgcctct aacccagtgt atgctacctt 1020 gaagatacgg atctacttct atgattccgt gacaaattaa taaatattga attttattga 1080 agatgattgg tctacaaata caacatgttg taatacattc cataatacat gatcaactgc 1140 tctaactaca ttattaatac tgacaattcc taagttattt aaatatttaa gcacttgagt 1200 cctaaatacc cttaagaaac gaccagtcgg aggctgtgag gtcatccaga ttcggaaagc 1260 tatgaaacat ttgtgtatcc ccaacgcttt cctcaggttg tgattgaact ggatcctgat 1320 cgtgagtata tccatattcg tcgtgaatgg acggttgacg tggctgatga tcttgaaata 1380 aaggggatgt ggaacctccc agatatatgc gacattccct gctagagctg aagtgatggg 1440 ttcccttgtg cgtgaatcca tggttgtggc agttgattga cagattataa taacacgcgc 1500 attcaagatc tattctcctc ctcctgttgc gtctcttcgc ttccctgtgc tgtactttga 1560 ttggaagctg agtacagtgg tccttcgaga gtgatgaaga ttgcattctt taaagcccaa 1620 ttttttagtg cagaattctt ctcttcatcc aaaaactctt tatagcttga attgggtcct 1680 tgattgcaga ggaagatagt gggaattccg cctttaattt gaactggctt cccgtatttt 1740 gtatttgatt gccagtcctt ttgggccccc atgaactcct taaagtgctt taggtaatgc 1800 gggtcgacgt catcaatgac gttaaaccag gcgtcattac tgtataccct tgggctcaga 1860 tctagatgtc cacacagata attatgtgga cctaatgatc tggcccacat cgtcttcccc 1920 gtcctactgt caccctcaat cactaaactt attggtctat tgggccgcgc agcggcactg 1980 acgacgttct cggcagccca cacttcaagt tcttctggaa cttgatcgaa agaagaagag 2040 gaaaaaggag aaacataagg agctggtggc tcctgaaaga ttctgtctag atttgcattt 2100 aaattatgaa attgcagtac aaaatcctta ggagctagtt ccttaatgac tctaagagcc 2160 tccgacttat ttcccgcgtt aagtgctgcg gcgtaagcgt cattggctgt ctgttgccct 2220 cctcttgctg accttccgtc gatctgaaat tgcccccagt cgagaatgtc cccgtccttc 2280 tcgatgtagg atttgacgtc ggagctggat ttagctccct gtatgttcgg atggaaatgt 2340 gctgacctgc ttggggagac caagtcgaag aatcgcatat tctggcactt gaatttccct 2400 tcgaactgga tgagaacatg caagtgagga gtcccatctt cgtgaagctc tctgcagatt 2460 ctaatatatt tttttgaagt tggggtttgt atatttaata attgggaaag tgcttcctct 2520 ttggtgagag aacatttggg ataagtgatg aaatagtttt tggaataaaa accgttccgc 2580 tttggaggca tgttgactaa aattgatcac cgattgaccg ctcttgcaac tctccccggt 2640 atatcggtga tcaatatata gtgatcacca aatggcataa tggtaataaa aaaactttaa 2700 tttgaaattc aaaccaaaag gctaaagcgg ccatccgttt aatatt 2746 //