Dbfetch

Dbfetch

ID   HQ245358; SV 1; linear; genomic RNA; STD; VRL; 1559 BP.
XX
AC   HQ245358;
XX
DT   07-JUN-2011 (Rel. 109, Created)
DT   07-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Sugarcane yellow leaf virus isolate CHN-GX-YZ1 P0 RNA silencing suppressor
DE   gene, complete cds; and multifunctional protein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1559
RA   Wang M., Xu D., Zhou G., Li R.;
RT   "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by
RT   RT-PCR-RFLP analysis and nucleotide sequencing of viral genome";
RL   Unpublished.
XX
RN   [2]
RP   1-1559
RA   Wang M., Xu D., Zhou G., Li R.;
RT   ;
RL   Submitted (10-SEP-2010) to the INSDC.
RL   College of Natural Resources and Environment, Plant Pathology, Laboratory
RL   of Plant Virology, South China Agricultural University, Tianhe, Wushan,
RL   Guangzhou, Guangdong 510642, China
XX
DR   MD5; c2718c9cd697ea97927f9762e4f64d16.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1559
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid cultivar Yunrui99-601"
FT                   /isolate="CHN-GX-YZ1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="leaf"
FT                   /collection_date="Dec-2008"
FT                   /db_xref="taxon:94290"
FT   CDS             1..771
FT                   /codon_start=1
FT                   /product="P0 RNA silencing suppressor"
FT                   /note="ORF0"
FT                   /db_xref="InterPro:IPR021411"
FT                   /db_xref="UniProtKB/TrEMBL:F8RUQ7"
FT                   /protein_id="AEG89102.1"
FT                   /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT
FT                   YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV
FT                   LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFFERG
FT                   YDTFRSVLGVHLLEHERFVSRILEQPIMGPDQAVRLCFHYHNALDHDDDDSGLETDFDN
FT                   LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI"
FT   CDS             176..>1559
FT                   /codon_start=1
FT                   /product="multifunctional protein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:F8RUQ8"
FT                   /db_xref="InterPro:IPR000382"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="InterPro:IPR018019"
FT                   /db_xref="UniProtKB/TrEMBL:F8RUQ8"
FT                   /protein_id="AEG89103.1"
FT                   /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL
FT                   SFYGLPAINSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWRDCKTFSRE
FT                   ATTLSDRFLEYTFSNTKGLLVEFLNNLLWDLIKLYVYAFTIITRLIMTMTILAWKPILI
FT                   ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRGDEKMVQRFK
FT                   SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSAHCISDSFKVRSFRNGI
FT                   KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT                   MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT                   VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA
FT                   EEE"
XX
SQ   Sequence 1559 BP; 398 A; 375 C; 362 G; 424 T; 0 other;
     atgcttttca acgaattctc tgttgaggga attaaattca gagcacacga aagcacttca        60
     cccgtctttc gtggggaggt ttccaggtgt ttgacctact acagagtctt cgcctgcaag       120
     tgggttgagt tgacctatca agatccactc acacgccatc tagtacaaga ttactatggc       180
     cccaacactc ccgtttacaa ctggctggag cacatacgcc ttattgttgt cactatggtg       240
     cctattctgc tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac       300
     ctccagtctg tccttttatg gcttgcccgc aataaactct actatagagt taagagatgc       360
     cgttccaagc ggtttgtact cgagcaagat cacatcggcc ccgaactttt ccgaactcag       420
     ctactccagt atgctgggtt ggatgttttt caagatgtgg cgcgattgca agactttttc       480
     gagagaggct acgacacttt ccgatcggtt cttggagtac accttctcga acacgaaagg       540
     tttgttagtc gaattcttga acaacctatt atgggacctg atcaagctgt acgtttatgc       600
     tttcactatc ataacgcgct tgatcatgac gatgacgatt ctggcctgga aaccgatttt       660
     gataatctgt ctcttggtcg tccttacatc aatggtctac cacctaatga gaaaattatt       720
     ttcattcatt caaatttggt gggtcgtagc acctattctc atgatatata ggaccgtcac       780
     gtacattcac agaaggttgt tcgcttcacg tggggacgag aaaatggtcc aacgtttcaa       840
     aagctttgcc gtccccatgt caccaccagg acactcagtg cttgagatag tacaccccga       900
     tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag aggctctcat       960
     gacatccgct cactgcataa gcgattcttt caaggttcgc tcgttcagga atggtatcaa      1020
     gatccctcta acggaattcc aagtgctgtt gcccgccaat gcgatggaca ttgttcttct      1080
     tcgaggccca cctgagtgga agtccatcct tggagccaaa gcagcccact tcactccagt      1140
     caaccagctc aacaaagggg ctgtgtcctt cttcattttc gacaaggagt ggatgatgca      1200
     caacgcaaaa gttacaggaa ctgatggttt ttatgctaca gttcttagta acactgagaa      1260
     gggctacagt ggcgccccct actggaatgg gaaatctata gtaggggttc ataaagggca      1320
     cgtgtacgga gacgattcca agaattacaa tcttatgtcg ccgattcccc ctgtcaaggg      1380
     gttaacggcg cctaattttg tgtatgagtc tccgtctctg caaggagatg tctttagcga      1440
     cgccgacgtt tcagacattg ctgattacgc cgaggaggtg tatgagaaaa cccttgcaga      1500
     gcctaaagtg tggaaacctg ccagcggtaa atactggtgg gaaatggctg aagaggagg       1559
//