Dbfetch

Dbfetch

ID   HQ245323; SV 1; linear; genomic RNA; STD; VRL; 1284 BP.
XX
AC   HQ245323;
XX
DT   07-JUN-2011 (Rel. 109, Created)
DT   07-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Sugarcane yellow leaf virus isolate CHN-FJ-FZ1,coat protein and movement
DE   protein mRNA,complete cds;putative aphid transmission factor mRNA,partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1284
RA   Wang M., Xu D., Zhou G., Li R.;
RT   "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by
RT   RT-PCR-RFLP analysis and nucleotide sequencing of viral genome";
RL   Unpublished.
XX
RN   [2]
RP   1-1284
RA   Wang M., Xu D., Zhou G., Li R.;
RT   ;
RL   Submitted (10-SEP-2010) to the INSDC.
RL   College of Natural Resources and Environment, Plant Pathology, Laboratory
RL   of Plant Virology, South China Agricultural University, Tianhe, Wushan,
RL   Guangzhou, Guangdong 510642, China
XX
DR   MD5; 21a93c7156822e6de10b4dbfb4dc778b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1284
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid cultivar Badila"
FT                   /isolate="CHN-FJ-FZ1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="leaf"
FT                   /collection_date="Jul-2006"
FT                   /db_xref="taxon:94290"
FT   CDS             31..>1284
FT                   /codon_start=1
FT                   /transl_except=(pos:619..621,aa:OTHER)
FT                   /product="putative aphid transmission factor"
FT                   /note="produced by translational readthrough of TAG stop
FT                   codon of ORF 3"
FT                   /db_xref="GOA:F8RUG2"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR002929"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:F8RUG2"
FT                   /protein_id="AEG89009.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY
FT                   FGYHGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV
FT                   LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR
FT                   TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV
FT                   PYANFTVKILEWGSISVAI"
FT   CDS             31..621
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q9QQN7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9QQN7"
FT                   /protein_id="AEG89007.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT   CDS             62..514
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q9WI47"
FT                   /protein_id="AEG89008.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
XX
SQ   Sequence 1284 BP; 359 A; 331 C; 303 G; 291 T; 0 other;
     aaatcagtac acacatccga gcgatagtga atgaatacgg gcgctaaccg ctcacgaagg        60
     aatgtcagaa gacgcgctaa ccgtcgtaga cagactcggc cagtggtcgt ggtccgggct       120
     cccccaggac ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga       180
     ggaccgggag gaagaagcaa ccgggatgtt ctcactttca cggttgacga tctcaaagcc       240
     aactcaaccg ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat       300
     ggcttactca aagcctacca tgagtataaa atcacaagtc tcactattca gtataactca       360
     tgctcctccg acgcaactcc aggtgcaatc gcacttgaag tggatacatc ctgctcccaa       420
     acaacaacag gctccaagat tactagcttc cccgtcaaga ggaacgccaa gaaagtcttc       480
     ccggccccct tcatcagggg gaaagatttc atgactacgt cagctgacca gttttggttg       540
     ctgtacaaag ggaatggaga ctcgagccta gcaggacaat tcgtctgccg atttgaatgc       600
     cttttccaga atcccaaata ggtaggcgac gctcccccaa cacccacccc aacaccaacc       660
     ccacccgctc cgaccccggc accggctccc aagtattttg gataccacgg agtgccgaac       720
     aacatcgtga aaacaagagg aaactctgaa tatctagatg tgggtccgct cgaaaatgtg       780
     accatgtatc tttggaaaga cgaatcgtgg agcattgagc aactgtcagc cggatatcgc       840
     gttaacaatc gagaacgtgc catacccttt gtcctctttc cagtggataa aggcaaatac       900
     tccgtgttca tacaatgtga gggctttaag gcagttaaag ccaaaggagg cacgaacgac       960
     ggcaagatga gcgggtttct ttgtgacaat gcaaatctcg cgggttggcg agcatacgca      1020
     tatagtgggt gtacaatctc taattataga acatcggact ctaatgttcc tggtcatccg      1080
     gacatgaaag tcaatggtgg atcttttacc gaccaattgg tcgagagaga tttttcttgt      1140
     tcatttcacc ttgaggtgcc tcaacaaggc tattttggcc tagaggcccc acccattgaa      1200
     aagagtgatc atttcaattt tgtggtgcct tacgctaatt tcactgttaa aatcctggaa      1260
     tggggttcaa tctccgtagc gata                                             1284
//