ID HQ245318; SV 1; linear; genomic RNA; STD; VRL; 5744 BP. XX AC HQ245318; XX DT 07-JUN-2011 (Rel. 109, Created) DT 07-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate CHN-GD-WY20, partial genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5744 RA Wang M., Xu D., Zhou G., Li R.; RT "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by RT RT-PCR-RFLP analysis and nucleotide sequencing of viral genome"; RL Unpublished. XX RN [2] RP 1-5744 RA Wang M., Xu D., Zhou G., Li R.; RT ; RL Submitted (10-SEP-2010) to the INSDC. RL College of Natural Resources and Environment, Plant Pathology, Laboratory RL of Plant Virology, South China Agricultural University, Tianhe, Wushan, RL Guangzhou, Guangdong 510642, China XX DR MD5; 27dba05bc78fb785f18c6bf7e80acbbc. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5744 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar" FT /isolate="CHN-GD-WY20" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="leaf" FT /collection_date="Oct-2008" FT /db_xref="taxon:94290" FT 5'UTR <1..34 FT CDS 35..805 FT /codon_start=1 FT /product="P0 RNA silencing suppressor" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:F8RUD2" FT /protein_id="AEG88977.1" FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFACRWIQLT FT YSDEHTRHLVHNFYGPNTPVYFWLDHIRAVVATMVPILLLPDTTLGQHLHIKGQYLKSV FT LLWLARNKLYYRVTRCFSRRFTLEQEPISAELFRTQLLKYVGMDIFQDVARLQNILERG FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPCQTLRLCFHYHDTLDHDDSDSDMETARHN FT RLFGLPIIRDLPDDEKALFIHSNLVGASTSASDV" FT CDS join(210..1703,1703..3421) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF 1 gene product" FT /db_xref="GOA:F8RUD3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F8RUD3" FT /protein_id="AEG88979.1" FT /translation="MAPTRLFTFGWITFALLLLQWCQYSSCQTQPWDSTSISKDSISSL FT SFYGWPGINSTIELHGVSPGGSLSSKSPSQLNFSELNYSSMLGWIFFKMWLDCKTFSRE FT AMILSDRFLGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIMIRWIMTIVILTWRPLVT FT IAFLVFLSSVTYQMMKKLYSFIQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFK FT SFAVPMTPPGHAVLEIVHPDDSHMGYASCVRLKNGEEALLTSVHCINETFKVRSLRNGV FT KIPLTEFQVLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWK FT MHNAKVTGTDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPP FT VVGLTAPAFVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKPPPPESPVEKAPGEKQTPACTVEKASTPVRADSGPGKRAEWRRPLKNT FT GIHPAQARRIYKRVAQQHRLAVDPKDRPELHCNEGGGETAAKSTEQTAAERREEVAAKT FT QDLEHFFQAAYKWEETPSDIPGFRKCGKLPALYHPPKPKSTQWGERIISEHPEMASKVA FT GFGWPLFGAQAEETSLRLQAARWLKRAELAEKPTATQRRLVIDRVVKAYEPCKTNAPHT FT SSSGSLLWNDFLKDFKEAINSLELDAGIGLPYKLLNKDVHRQMVEDPKFLPLLTRLTWN FT RLQKMSQVDFREMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIRGWRDKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFK FT VEVASQLEFCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHQWLVPGATTK" FT CDS 210..2162 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:F8RUD4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:F8RUD4" FT /protein_id="AEG88978.1" FT /translation="MAPTRLFTFGWITFALLLLQWCQYSSCQTQPWDSTSISKDSISSL FT SFYGWPGINSTIELHGVSPGGSLSSKSPSQLNFSELNYSSMLGWIFFKMWLDCKTFSRE FT AMILSDRFLGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIMIRWIMTIVILTWRPLVT FT IAFLVFLSSVTYQMMKKLYSFIQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFK FT SFAVPMTPPGHAVLEIVHPDDSHMGYASCVRLKNGEEALLTSVHCINETFKVRSLRNGV FT KIPLTEFQVLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWK FT MHNAKVTGTDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPP FT VVGLTAPAFVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKPPPPESPVEKAPGEKQTPACTVEKASTPVERTPVQGNEPSGADHLKTP FT ESTPLKPDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLQKAQNKQQQNGGKKSPRKR FT KTSNTSSKPPTNGKKPPVTSQGSGSAANSQRYTIPQNRKAHNGESASSQNTQRWRPKSP FT DSGGLSSAPKPKRQV" FT CDS 3613..5640 FT /codon_start=1 FT /transl_except=(pos:4201..4203,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon of ORF 3" FT /db_xref="GOA:F8RUD5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F8RUD5" FT /protein_id="AEG88982.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY FT FGYQGVPNNTIRTRGNSEYLDVGQLDSVTMYLWKDESWSIEQLPAGYRVNTQDRAIPYL FT LIPVEKGKYSVFIQCEGFKAVKAKGGTNNGKMSGFICDNINLQGWRAYAYSGCSISNYK FT TADSNVPGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQKGYFGLEAPPIEKSDHFNFVV FT SYANFTEKTMEWGSVSIAIDEVSDGAYSGSKWDKTTAMSARLRDLVSAPSEVYTPVALV FT SSADEGTGNTPLAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE FT SPIYAPPPPPSLGHSHVDTQRQADKVRRSLMANASRSASPPPAATEVPVLGSVDTVSQG FT STLRGGSLRGNLNSRPSLPRVADSPPRSVSPARSETSTLQVGSLSGGSLRGGSLQVLPE FT ATREQRRQYESLKNSQGKTVAKNYAKEQGFKPPKSASFFG" FT CDS 3613..4203 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:B7U4M6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B7U4M6" FT /protein_id="AEG88980.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK" FT CDS 3644..4096 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:F8RUD7" FT /protein_id="AEG88981.1" FT /translation="MSEDALTVVDRLGQWSWSGPPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS" FT 3'UTR 5641..>5744 XX SQ Sequence 5744 BP; 1518 A; 1515 C; 1416 G; 1295 T; 0 other; atttagaact cagcctctgg ttgtaaactg ctctatgctt ttcaacgaat tcagcgttca 60 aggcatcaag tttagagcac acgcaagcac ttcgccagtt ttgcgtgagg acgtgagcag 120 gtgtttgacc tactacaggg tcttcgcttg caggtggata caactcactt actcagacga 180 gcatacacgc cacctggtcc ataatttcta tggccccaac acgcctgttt acttttggtt 240 ggatcacatt cgcgctgttg ttgctacaat ggtgccaata ctcctcctgc cagacacaac 300 cctgggacag cacctccata tcaaaggaca gtatctcaag tctgtccttc tatggttggc 360 ccggaataaa ctctactata gagttacacg gtgtttctcc cggcggttca ctctcgagca 420 agagcccatc tcagctgaac ttttccgaac tcaactactc aagtatgttg ggatggatat 480 ttttcaagat gtggctagat tgcaaaacat tctcgagaga ggctatgatc ctttccgatc 540 ggttcttggg gtactccttc gagaacgcga aaggtttgtc gatcgagttc ttgaacaacc 600 tcctctggat ccttgtcaga ctctacgttt atgctttcac tatcatgata cgctggatca 660 tgacgatagt gattctgaca tggagaccgc tcgtcacaat cgcctttttg gtcttcctat 720 catccgtgac ttaccagatg atgaaaaagc tttattcatt cattcaaatc tggtgggtgc 780 tagcacctct gctagtgatg tttaggttgg ccatgtactt gaggcggagg ttgttctcga 840 atcgtgggga cgagaaaatg gttgcaggtt tcaaaagctt tgcagtcccc atgactccac 900 cgggacacgc tgtacttgaa atagtacacc cagacgactc ccacatggga tatgcatcct 960 gtgtacggtt gaagaatggg gaagaggcat tactgacatc tgttcactgc attaacgaaa 1020 cctttaaggt tcgttccctc aggaatggag tcaagatacc tctgacggaa tttcaggtac 1080 tcttacccgc caagaatatt gacttagttc ttctacgagg cccacctgag tggaagtcta 1140 ttcttggagc caaagcagcc catttcactc cggcaaacca gctcaacaaa ggagctgtgt 1200 ccatcttcgt tcacgatggt gagtggaaaa tgcacaatgc aaaggttacg ggcactgatg 1260 gcttttacgc cacggtgttg agtaacacag agaagggctt cagtggcgcc ccctactgga 1320 acggcaaaag catagtgggg gttcacaaag ggtacgtgta tggggacgat tcaaagaact 1380 acaatctcat ggcgccaatc ccccctgttg tggggttgac agcgccagca tttgtttatg 1440 aatccccctc tctgcaagga gatgtcttta gcgatgccga cgtttcagac atggctgatt 1500 acgctgaaga agtgtatgaa aaagcccttg cagagcccaa agtgtggaaa cccgccagcg 1560 gcaaatactg gtgggaaatg gccgaagaag aggatgattt cgtggttgaa gcgaaacctc 1620 ctccccctga atcccccgtt gagaaagctc caggagagaa gcagactcca gcatgcactg 1680 ttgagaaagc ttcgactcct gtcgagcgga ctccggtcca gggaaacgag ccgagtggcg 1740 ccgaccactt aaaaacaccg gaatccaccc cgctcaagcc agacgaatct acaaaagagt 1800 tgctcaacaa catcgtctcg cagttgatcc aaaagatcga cctgagctcc attgcaacga 1860 gggtggagga gaaactgctg caaaaagcac agaacaaaca gcagcagaac ggagggaaga 1920 agtcgccgcg aaaacgcaag acctcgaaca cttcttccaa gccgcctaca aatgggaaga 1980 aacccccagt gacatcccag ggttcaggaa gtgcggcaaa ctcccagcgc tataccatcc 2040 cccaaaaccg aaaagcacac aatggggaga gcgcatcatc tcagaacacc cagagatggc 2100 gtccaaagtc gccggattcg ggtggcctct cttcggcgcc caagccgaag agacaagtct 2160 gagactccaa gcggcccgct ggctcaaacg agccgagcta gcggaaaagc cgactgcaac 2220 acaacgcagg ctcgtcattg atcgtgtggt taaggcatat gaaccgtgta aaaccaatgc 2280 cccacacacc agctcctctg gtagcctcct gtggaacgat ttcctcaagg attttaaaga 2340 ggctatcaac tcactagaac tcgacgctgg aataggtctc ccatacaaac tcctcaacaa 2400 ggatgtccat cgtcaaatgg ttgaagaccc caaattcctg ccgctcctga cgcgattgac 2460 ctggaaccgt ttacagaaga tgtcccaggt tgatttccgg gagatgactc ctgaacaact 2520 agtgagagaa ggattgtgcg acccgatccg tttgttcgtc aaaggggaac cgcacaagca 2580 ggccaagctt gatgaagggc gctaccgcct catcatgtca gtctcgctgg tagatcaact 2640 ggtagcccgg gttttgttcc aagcgcaaaa caagagagag atagctttgt ggagagctat 2700 cccgtcgaag cccggttttg gcttatccac agacagggaa gcacgcgaat tcatagaatc 2760 cctgtccaag acagtagggt gttccccagc tgaagtcatt cgtggctggc gggacaagat 2820 cgtacccacc gactgttccg gctttgactg gtcagtcgcc gactggatgc tcgaggacga 2880 catggaagtg agaaaccttc tcactatcaa taacaacgag ctcacccggc gccttcgggc 2940 atgctggctg aagtgcatca ctaactcagt gatttgcacg tccggcggtg tcttgtacgc 3000 ccaaactcac cctggtgtgc agaaatctgg atcttacaac acgagttcat ccaattccag 3060 ggttcgagtg atggccgctt ttcattgcgg tgctgattgg gcgatagcca tgggggatga 3120 cgcacttgaa tccccaaact ccaacatcaa cgcgtatcaa aagttggggt tcaaagtcga 3180 ggttgcttca cagctagaat tttgctcaca cgtctttgag caggaagacc tcgccaggcc 3240 gttgaacgta aacaagatgc tttatcgttt gatatttgga tacaatccgg cctgtggcaa 3300 cgcggaggta ttgtgcaatt acctccaagc tgtggcttca gttctcaacg agttacgcca 3360 cgatccgcag ctagttgcca ccctccacca gtggttggtt cctggcgcca ccacaaaata 3420 aatacggagg gtcatcccga gccaccattt aggttgcgag agtggaacgg gcagtcctaa 3480 caagccgcga gattctggat tacaagctac tagctggggt ccttattggc attctcattg 3540 cgatccccct agtgatttta gcggcttacc tgatattcct caaaatcagt gcacatatcc 3600 gagcgattgt taatgaatac gggcgctaac cgctcacgaa ggaatgtcag aagacgcgct 3660 aaccgtcgtc gacagactcg gccagtggtc gtggtccggc ccgccgcagg acctagacga 3720 gtacgacgac gtagagcacg tgttggagga aacgctgtgc gaggaccggg aggaagaagc 3780 aacagggatg ttctcacttt cacgattgac gatctcaagg ccaactcaac cgggatcctc 3840 aaattcggac cgaacctatc tcagtacgca gcgttcaaca atggcttact caaagcctac 3900 catgagtata aaatcacaag tctcacaatt cagtataact catgctcctc cgacgcaact 3960 ccaggtgcaa tcgcacttga agtggataca tcctgctccc aaacaacaac aggctccaag 4020 attactagct tccccgtcaa gaggaacgcc aagaaaacct tcccggcccc cttcatcagg 4080 gggaaagact tcatgactac atcagctgat cagttttggc ttttgtacaa agggaatgga 4140 gacggaagcc tagcaggaca attcgtctgc cgatttgaat gtttattcca gaatcccaaa 4200 taggtaggcg acgctccccc cacacccaca ccacaaccaa ccccacccgc tccggccccg 4260 gcaccagcac ctaaatattt tggatatcaa ggtgtgccga acaacaccat cagaactcga 4320 ggcaactcag agtatctcga tgtgggccaa ctcgatagcg tgaccatgta cctctggaaa 4380 gatgaatcat ggagcatcga gcaactgcca gccggatatc gagtcaatac tcaagatcgt 4440 gccatacctt atctcctcat tcctgtggag aaaggaaaat actccgtgtt catacaatgt 4500 gagggcttta aggcagtaaa agccaaagga ggcacgaata acggcaaaat gagcgggttt 4560 atctgtgaca atataaatct tcagggttgg agagcgtatg catatagtgg gtgttcaatc 4620 tctaattaca agacagctga ctcgaacgtg cctggccatc cagacatgag agtgaacaac 4680 tgttctttta ccgaccagct ggtcgagaga gatttttctt gttcatttca cctcgaggtg 4740 cctcagaaag gctattttgg tctagaggcc ccacccattg aaaagagtga tcatttcaac 4800 ttcgtggtgt cttacgctaa tttcactgag aaaacaatgg aatggggatc agtctccata 4860 gcgatagacg aggtgagtga cggagcgtat agtggatcaa aatgggataa gaccactgca 4920 atgagcgctc gtttgcgaga cctagtgagc gccccatcgg aagtttacac tccggtggca 4980 ctagtatctt cagcagacga agggacaggg aatacgcccc tagccccgaa cccggcactg 5040 ggaccggata acccagcaac caaagagccc gcgcccaaaa tcgtggactc gccggatccg 5100 aaggttctca actggctcaa caaccagaaa gatgaaccag tggtgaatga ggttttgcga 5160 gaatctccga tttatgcgcc tccaccacct ccgtctctcg gtcactctca tgttgataca 5220 cagagacagg cggataaggt ccggcgctct cttatggcta acgcttcacg ttcagcctca 5280 cctcctcctg cagccactga ggtgcccgtg cttggatccg tcgataccgt ctctcaaggc 5340 agtactcttc gcggcgggtc tctcagaggt aatttgaact ctcgcccctc cttgccgagg 5400 gtcgctgaca gtcctccccg gtctgtaagt ccggctcgtt ctgagaccag tacattacag 5460 gtcggttctc tgagtggtgg ttcattgaga ggtggcagcc tacaggtttt acctgaggcc 5520 acgagagagc agaggaggca gtacgaatct ttgaaaaatt cacaaggaaa gacagtggca 5580 aagaactatg ccaaagagca aggtttcaag ccaccgaaat ccgcctcctt ctttggttga 5640 gtgttggaac actataaact ccccctcctc gggacacagg gctccgcaca tgagcttaaa 5700 ccgcgttcga tccacgaaca gaaactggag aactccgcaa agtt 5744 //