ID HQ245316; SV 1; linear; genomic RNA; STD; VRL; 5716 BP. XX AC HQ245316; XX DT 07-JUN-2011 (Rel. 109, Created) DT 07-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate CHN-GD-JM2, partial genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5716 RA Wang M., Xu D., Zhou G., Li R.; RT "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by RT RT-PCR-RFLP analysis and nucleotide sequencing of viral genome"; RL Unpublished. XX RN [2] RP 1-5716 RA Wang M., Xu D., Zhou G., Li R.; RT ; RL Submitted (10-SEP-2010) to the INSDC. RL College of Natural Resources and Environment, Plant Pathology, Laboratory RL of Plant Virology, South China Agricultural University, Tianhe, Wushan, RL Guangzhou, Guangdong 510642, China XX DR MD5; a8e19bcbec6d1b2bcb891d52173429d2. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5716 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar" FT /isolate="CHN-GD-JM2" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="leaf" FT /collection_date="Sep-2008" FT /db_xref="taxon:94290" FT CDS 1..771 FT /codon_start=1 FT /product="P0 RNA silencing suppressor" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:F8RUC0" FT /protein_id="AEG88965.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG FT YDTFRSVLGVHLLEHERFVSRILEQPIMEPDQAVRLCFHYHNTLDHDGDDSGLETDFNN FT LSLGRPYINGLPRNEKIIFIHSNLVGHGPSSHDV" FT CDS join(176..1669,1669..3387) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF 1 gene product" FT /db_xref="GOA:F8RUC1" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F8RUC1" FT /protein_id="AEG88969.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTVTILAWKPILI FT ICLLVVLTSMVYHVMRKLSSYIQIWWVMAPLLMMYRTVMWMHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSLFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPLPDKPVENATAKEQTPALTVEKATVADSADSRPGKRAKWRRPLKNT FT GIHPAQARRIYKRVAQQHRLAVDSKDRPELHCNEGGGETAASSPEQTAAERREEVAQKT FT QDLEHFFQAAYKWEESTSDISGFRKCGKLPALYHPPKPKSTQWGERIISEHPEMASKVA FT GFGWPSFGAQAEETSLRLQAARWLKRAESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHT FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLHKDTHRQMVEDPKFLLLLTRLTWN FT RLQKMSQVDFQEMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWKDKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRIRVMAAFHCGADWAIAMGDDALESPNSDINAYQKLGFK FT VTVASQLEFCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHEWLVPGAATK" FT CDS 176..2128 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:F8RUC2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:F8RUC2" FT /protein_id="AEG88966.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTVTILAWKPILI FT ICLLVVLTSMVYHVMRKLSSYIQIWWVMAPLLMMYRTVMWMHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSLFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPLPDKPVENATAKEQTPALTVEKATVADQPTPDQGNEPSGADHLKTP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPATSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP FT VSGGPPSAPKPRRQV" FT CDS 3582..5612 FT /codon_start=1 FT /transl_except=(pos:4170..4172,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon of ORF 3" FT /db_xref="GOA:F8RUC3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F8RUC3" FT /protein_id="AEG88970.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVDDAPPTPTPTPTPPAPTPAPASKY FT LGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNNGKMSGFLCDNANLAGWRAYAYSGCTISNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPETPE FT QPANEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLTPTSADTLRQADKVRRALMANASRATSPPPTTAEVPILGATDTASRS FT GSLRGGSLRGNLGFRPSLPRVADSPPRSVSPVRSETSTLQGGSLSGGSLRGGNLQVLPE FT ATREQRREYERLKNSQGKTVAKAHAKDHGYKPPKSSSSLFG" FT CDS 3582..4172 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AEG88967.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3613..4065 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="AEG88968.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" FT 3'UTR 5613..>5716 XX SQ Sequence 5716 BP; 1528 A; 1479 C; 1373 G; 1336 T; 0 other; atgcttttca acgaattctc tgttgaggga attaaattca gagcacacga gagcacttcg 60 cctgtctttc gtggggaggt ttccaggtgt ttgacttact acagagtctt cgcctgtaag 120 tgggttgagc tgacctatca agatccactc acacgccatt tagtacaaga ttactatggc 180 cccaacactc ccgtttacaa ctggctggag cacatacgcc ttattgttgt cactatggtg 240 cctattttgc tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac 300 ctccagtctg tccttttatg gcttgcccgc aacaaactct actatagagt taagagatgc 360 cgttccaagc ggtttgtact cgagcaagat cacatcggcc ccgaactttt ccgaactcag 420 ctactccagt atgctgggtt ggatgttttt caagatgtgg ctcgattgca agactttctc 480 gagagaggct acgacacttt ccgatcggtt cttggagtac accttctcga acacgaaagg 540 tttgttagtc gaattcttga acaacctatt atggaacctg atcaagctgt acgtttatgc 600 tttcactatc ataacacgct tgatcatgac ggtgacgatt ctggcctgga aaccgatttt 660 aataatctgt ctcttggtcg tccttacatc aatggtctac cacgtaatga gaaaattatc 720 ttcatacatt caaatttggt gggtcatggc ccctcttctc atgatgtata ggaccgtcat 780 gtggatgcac agaaggttgt tcgcctcacg tggggacgag aaaatggtcc aaggtttcaa 840 aagttttgcc gtccccatgt caccaccagg acactcagtg cttgagatag tacaccccga 900 tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag aggctctcat 960 gacatctgtt cactgtataa gcgattcttt caaagttcgc tcattcagga atggtatcaa 1020 gatccctcta acggaattcc aagtgctgtt gcccgccaat gcgatggata ttgttcttct 1080 tcgaggccca cctgagtgga aatccatcct tggagctaag gcagcccact tcactccagt 1140 caaccagctc aacaaaggag ctgtgtctct cttcattttc gacaaggagt ggatgatgca 1200 taacgcgaag attacaggaa ctgatggttt ttatgccaca gttcttagta acactgaaaa 1260 gggctacagt ggcgccccct actggaatgg gaaatctata gtaggggtgc ataaagggca 1320 tgtgtacgga gacgattcca agaattacaa tcttatgtcg ccgattcccc ctgttaaggg 1380 gttaacggcg cctaattttg tgtatgagtc tccgtctttg caaggagatg tctttagcga 1440 tgccgacgtt tcagacattg ctgattacgc cgaagaggtg tatgagaaaa cccttgcaga 1500 gcctaaagtg tggaaacccg ccagcggtaa atactggtgg gaaatggctg aagaagagga 1560 tgactttgtc gttgaggcaa attcacccct ccctgataaa cctgttgaga acgctacagc 1620 aaaagagcag actccagctt tgactgtcga gaaagctacg gttgctgatc agccgactcc 1680 agaccaggga aacgagccaa gtggcgccga ccacttaaaa acaccggaat ccaccccgct 1740 caagcaagac gaatctacaa aagagttgct caacaacatc gtctcgcagt tgattcaaaa 1800 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcgtc aagcccagaa 1860 caaacagcag cagaacggag ggaagaagtc gcccagaaaa cgcaagacct cgaacacttc 1920 ttccaagccg catacaaatg ggaagagtcc accagcgaca tctcagggtt caggaaatgc 1980 ggcaaactcc ccgcgctata ccatccccca aaaccgaaga gcacacaatg gggagagcgc 2040 atcatctcag agcacccaga aatggcgtcc aaagtcgccg gtttcgggtg gccctccttc 2100 ggcgcccaag ccgaggagac aagtctgaga ctccaagcgg cacgctggct taaacgagct 2160 gagtcagcgg aaaagccgac agaaaaacaa cgcaagctcg tcattgatcg tgtggtcaag 2220 gcatatgaac cgtgtagaac taatgcccca cacaccagct cctctggcag cctcatctgg 2280 tccgacttct tgaaagattt caaggaggct gtcaactcac tagaactcga cgcaggaata 2340 ggtctcccat acaaacttct tcacaaagat actcaccgtc agatggttga agaccccaaa 2400 ttcctgctgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc tcaggtcgac 2460 ttccaggaga tgactcctga acaactagtg agagaaggat tgtgcgatcc gattcgtttg 2520 ttcgtcaaag gagaaccgca caagcaggca aagcttgatg aagggcgcta ccgcctcatc 2580 atgtcagtct cgctggtaga tcaactggta gcccgggttt tgtttcaagc acaaaacaaa 2640 agagagatag ctttgtggag agctatccct tcaaagcccg gtttcggctt atccacagac 2700 agggaagcac gcgaattcat cgaatccttg tccaagacag tagggtgttc cccagcagaa 2760 gtcattcatg gctggaagga caagattgta cccaccgact gttccggttt tgactggtca 2820 gtcgccgact ggatgctcga ggacgacatg gaagtgagaa atcttctcac tatcaataac 2880 aacgagctaa cccgccgcct tagggcgtgc tggttgaagt gcatcacaaa ctctgtgatt 2940 tgcacatccg gcggtgtctt gtacgcccaa actcatcctg gagtgcaaaa atctggatct 3000 tacaacacga gttcatccaa ttccaggatt cgagtaatgg ctgcttttca ttgcggcgca 3060 gattgggcga tagccatggg agacgatgca cttgagtctc caaactccga catcaacgcg 3120 tatcaaaagt tggggtttaa agtcacggtt gcctcacagc tagaattttg ctcacacgtc 3180 tttgagcagg aggacctcgc caggccgttg aatgtgaaca aaatgcttta tcgtttgatc 3240 tttggataca acccggcctg tggcaacgcg gaggtattgt gcaattacct ccaagctgtg 3300 gcttctgtac tcaacgaact tcgccatgat ccacagctag ttgctaccct ccatgagtgg 3360 ctggttcctg gcgccgccac aaaataagta cggaggggca tcccgagcca ccacataggt 3420 tgcaagagtg gaacgggaag tcctatagac aagccgcgag attctggatt acaaacttct 3480 agcgggggtt ctcattggtg ttctcatcgc aatcccccta gtgatcatag cggcttacct 3540 gatattcctc aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc 3600 gctcacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg ccagtggtcg 3660 tggtccgggc tcccccagga cctagacgag tacgacgacg tagagcacgt gttggaggaa 3720 acgctgtgcg aggaccggga ggaagaagca accgggatgt tctcactttc acggttgacg 3780 atctcaaagc caactcaacc gggatcctca aattcggacc gaacttatct cagtacgcag 3840 cgttcaacaa tggcttactc aaagcctacc atgagtataa aatcacaagt ctcactattc 3900 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa gtggatacat 3960 cctgctccca aacaacaaca ggctccaaga ttactagctt ccccgtcaag aggaacgcca 4020 agaaagtctt cccggccccc ttcatcaggg ggaaagattt catgactacg tcagctgacc 4080 agttttggtt gctgtacaaa gggaatggag attcgagcct agcaggacaa ttcgtctgcc 4140 gatttgaatg ccttttccag aatcccaaat aggtagacga cgctccccca acacccaccc 4200 caacaccaac cccacccgct ccgaccccgg caccggcttc taagtatctt ggataccaag 4260 gagtgccgaa taacatcgtg aaaacaagag gaaactctga atatctagat gtgggtccgc 4320 tcgaaaatgt aaccatgtat ctttggaaag acgaatcgtg gagcattgag caactgtcag 4380 ccggatatcg cgttaacaat cgagaacgtg ccataccctt tgtcctcttt ccagtggata 4440 aaggcaaata ctccgtgttc atacaatgtg agggctttaa ggcagttaaa gccaaaggag 4500 gcacgaacaa cggcaagatg agcgggtttc tttgtgacaa tgctaatctc gcgggttggc 4560 gagcatacgc atatagtggg tgtacaatct ctaattatag aacatcagac tctaatgtcc 4620 ctggtcatcc agacatgaaa gtcaatggtg gatcttttac cgaccagttg gttgagagag 4680 atttttcttg ttcatttcac ctcgaggtgc ctcaacaagg ctattttggt ctagaggccc 4740 cacccattga aaagagtgat catttcaatt ttgtggtgtc ttacgctaat ttcactgata 4800 aaatcctgga atggggttca atctccgtag cgatagacga ggtgaatgac ggagcgtata 4860 gtagatcaaa atgggataag actactgcaa tgagcgctcg tttgccgact caggtgagcg 4920 ccccttctga ggtttatacc ccggaaacac ctgagcaacc ggctaacgaa gggacggaga 4980 gtatgcctcc agccccgaac ccggcactgg gaccggataa cccagcaacc aaagaaccca 5040 cgcctaaaat cgtggacaat ccggacccaa aggtactcaa ctggctcaac aaccagcgag 5100 ataaacctgt ggtggaagag gttttgcgtg aatctccgat ttatgctcct ccacctcccc 5160 cgtctttaac cccgacttct gccgacactc tgagacaggc ggataaggtc cggagagctc 5220 tcatggctaa cgcttcgcgt gcaacttcac ctccccccac gactgccgaa gttcctattc 5280 ttggggctac tgacaccgct tctcgaagtg gatcattacg cggtggctcc ctcagaggta 5340 atttgggttt tcgcccctct cttccgaggg tcgctgacag ccctccccgt tctgtaagtc 5400 cggttcgttc cgagaccagt actctacaag gcggttctct gagtggtggt tctttgaggg 5460 gtggtaacct tcaggttttg cctgaggcca caagagagca aaggagggaa tatgaacgtc 5520 tcaagaattc acaaggaaag acggtggcaa aagcccatgc caaagaccac ggctacaaac 5580 ccccgaaatc ttcctcctcc ttatttggtt gagtgtcgag ccactctaac gctccccgcc 5640 ccgggacacg ggactccaat catgagttta aactgagctc tttccatgag cctaaactgg 5700 agaactccgc aaagtt 5716 //