Dbfetch
ID HQ241409; SV 1; linear; genomic RNA; STD; VRL; 6942 BP. XX AC HQ241409; XX DT 11-APR-2011 (Rel. 108, Created) DT 12-AUG-2011 (Rel. 109, Last updated, Version 3) XX DE Hardenbergia virus A isolate HarVA-57, complete genome. XX KW . XX OS Hardenbergia virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Divavirus. XX RN [1] RP 1-6942 RX DOI; 10.1007/s00705-011-0963-6. RX PUBMED; 21394605. RA Wylie S., Jones M.; RT "Hardenbergia virus A, a novel member of the family Betaflexiviridae from a RT wild legume in Southwest Australia"; RL Arch. Virol. 156(7):1245-1250(2011). XX RN [2] RP 1-6942 RA Wylie S.J.; RT ; RL Submitted (09-SEP-2010) to the INSDC. RL Plant Virus Group, Murdoch University, South Street, Perth, WA 6150, RL Australia XX DR MD5; 78a75f93cae59745fc36617ad13c5ca2. XX FH Key Location/Qualifiers FH FT source 1..6942 FT /organism="Hardenbergia virus A" FT /host="Hardenbergia comptoniana" FT /isolate="HarVA-57" FT /mol_type="genomic RNA" FT /country="Australia" FT /lat_lon="32.07 S 115.84 E" FT /collected_by="Stephen Wylie" FT /collection_date="10-Jun-2010" FT /db_xref="taxon:1003891" FT CDS 43..6720 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F4ZNG9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F4ZNG9" FT /protein_id="AEB00587.1" FT /translation="MSLVYRTPIESLINQLPSRLTENLAVNQVDILQHEEETYGRFLNF FT SLNKEQKKFLADKGVYLSPYSWRHHSHPACKTIENWLLYYEVGHYIRNLKKEESVNFLS FT LRGGKLNAIKKIHSIEGKDNNFYEKIMSFNRMCCAKDKLRYQNSSEKELLYSTFGEISE FT KVGKNGFFFVHDECHYWDPAMLENFISRVEPDSMVATVIHPMEVEKGKESSHLPFLYDF FT EINGDKIFFFPDGNKSEGYEQPKSAGWWLRMSKFTSSKGVYSLTLLRSIGPFHLILLTK FT QDRVVESKRFFDDFSIIDLPHSFEERHLIKRLNLVLRSGFLRKIVSYIKSLKKPDRESA FT IAKLRMMSEDDFSIEEMLFVEGMVDSMLKDGCKSIWEKGWADALVNYIVDLLPKAVQSY FT FFRKDYKAKENLDLLLNLNSLSIKLDTVPYDFSSFVPKENVSLRKELDALLDNNNGVQK FT GLLNNKSRSEFLFQRGSSEYSGRRGLNDILVFDGPTINNSIQSSIFESNLGNFLNGLSP FT ENHKAHMNSMKVILSRDPRYKIDSMKRSMRNSSLLRNNYGFIITKSLKTQSIFGQYGVE FT IVFVDKSKRNQIDIVIYIITACYVMHSQIDNSISENLDSELTYTEQHKLKDLALSLFEC FT KSFSDEIKDENHSCNASSSSHVENRKCDSDVIDERIFCNLSNKCCFESIMNAMSWDFMV FT LLDKLKGSKFLKLLIDDNGLLEEELVEMVDYLGLSFNLINQSGSTVIYSESNSHTLVLS FT SNHCMAAESKSVMNWTLNEKANFLNLPGVSYIRKNLYQKERATKLYRSLCKGSTGVLFN FT VLNKKTKETDSTKYKNRILEFMSFFFNDDFKFENQIESLHEPVYGFFGFAGSGKSRNIQ FT NYINDNFKNGGRATIISPRNELLKDWSSKIKCNNKHIRMMTYEKALTVSYSNDELVVID FT EIGLLPPGYISLLSLIVRIKTEEISQNVRLSKRNFLKFLNRTESRLVLIGDHLQCRYFN FT DSDTRLLEHSDEIDFVMEQEEIIYLNYSLRMAKNHHYKPGVKFFGETESKTTRRFLNVF FT VAKKAIPDAQVLVASHDEQVRFRELGAKTYGESQGLTMEQVIIVLSPPSINCSVYMWNV FT AMSRSTCAVHFALNGFDSIDDFLNRVKGTPVASMILGMEFDIHAQKFKTDKDPKLIKVE FT RLCLSQSDVENKLEGDPFLKSIIPSLDEGFPIDVEYKEANIELPTPKIHLPIESIENHI FT CYVSSMIRNREYREFIGDGSMSEQFPDFWKKGEPGYLLSQPERFQAIFPKHSNQDSLTF FT FAAVKKRLKFSSPHVEREKFEKVRHLGSEMFDVFLSKINLDNSYNHELMQMSVNEYIEK FT KVSKTSNTIKSHSSRSEPDWKLNDVFLFMKTQLCTKYEKRFCDAKAGQTLACFSHIVLN FT RFAAPTRYIEKKISQCLPSNYYIHQKKNFDCLNEWVIRNDFSESCLESDYEAFDSSQDC FT LILAFEYELLKYMGWKQDLLDDYLDLKFNLGCRLGNLAVMRFTGEFGTFLFNTLANMVF FT TFMSYELNGKESICFAGDDMCCNKGIKKRIDGKFDHILKRLSLKAKAMITNEPTFCGWR FT LTPFGIYKKPELILERFLIAIEKGRLVDVIDSYYLECSYAYSLGERLSKCFSEKDFVAH FT YCCVRLVHKHKSLLKGLSLIKFKENKRFCFSCKLSTQNRSLTSSMEDKRMLNALEYQTS FT TQMEAIQRMIRSTVHRPLKAPYQSGSKENLQESFKVFQYLSQMCLLRKEARKSTQRLTL FT EQLSLAYTSLGTIQKKHARESVCLLMEEGSGRMELFIPLDLIYQMGPLISSLHLMLYLI FT SMMRCWIEPVKFSSLLKTCSIYMDLVLFPLKSDQFTGCLMSSIVTIDLESQGEKEPLET FT LSRRCMELVFCLKMKKIEPSPKWRRPEFQVSYQMLELNQTESCMREGGALCAHGRNVDP FT VFIGIIVYHLSLDPAQKMYANLGQALVTLMNEEFLRTFWIVRLSLPLNHQTHRVTSGRM FT ATAEAAANQALQDWINNQEGFQGEAYGVRMRKMRRRTLLRNYWVSTMKGSFQNLGNANT FT PQNFTDAESVTYGRIMSDFAAHAFGILAEEGFSPATSYSSVGTNYTIDYGAPVGSTTIR FT FNPAEVARTFKYLYQSSPNNLFENMTWRQCGEAFATDIVRYFKELQPDAQSWLVKSNPV FT LAGNAPWVALDVTDGLDIRHLNPEEKKVIARAKNHLLRSMQLKGKESLSAEALLES" FT CDS 5049..6218 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F4ZNH0" FT /protein_id="AEB00588.1" FT /translation="MQIVNSKSFIDKFDGGQKNVKCIGISDVYSDGGYSKNDKVDSAQT FT SESSISIRVKGESSRIIQGVPILEPNVLAEERGKKKYSKVNIGAIVISIHKLGYYSKET FT CKGKCMLVDGRRVGKNGIIHSFGFDISNGPAHFIVAPNAVFDINDEVLDRACQIFFTFE FT NVQYIHGSCPFSIEIGSIYRMSNVFNCHHRLGVPGRKGAIGNTIQEVHGTRILFEDEED FT RTISQMEEARISGLISNAGVESNRELHEGRRSFMCPWKKRGPSFYRDYCISSELGSGSK FT DVCKFRSSTSDIDERRIFENFLDSSAVAPSESSDSQSYIRENGHRRSCCESSVARLDKQ FT SRRVPGRSLWRENEENEKKDTSEELLGVNNEGQFSESRECKHPSEFHGC" XX SQ Sequence 6942 BP; 2283 A; 1145 C; 1499 G; 2015 T; 0 other; cggatatagt atttgcctct tatccggcgt cccgtaaacg aaatgtcttt ggtttaccgt 60 acgccgatcg aaagtttgat taatcaatta ccatctaggt tgacagaaaa tttggctgtt 120 aatcaagttg atatccttca acatgaggaa gaaacatacg gaaggtttct gaactttagt 180 ttaaataagg agcaaaaaaa attcctggct gataaaggtg tgtatctatc accttactca 240 tggaggcatc actcgcaccc agcctgtaaa acaatagaaa attggctact ttattatgag 300 gttggtcatt atattagaaa tttaaagaaa gaagaaagtg ttaattttct atccctaagg 360 ggtggcaaac tcaacgcaat taagaaaata cattctattg aagggaaaga caacaatttc 420 tatgaaaaaa taatgtcttt caatagaatg tgctgtgcaa aagacaagtt aaggtatcaa 480 aatagctccg aaaaggaatt gctatatagc acatttggtg aaataagcga aaaagttgga 540 aaaaacggtt tcttctttgt gcatgatgaa tgtcattact gggatcctgc tatgctggaa 600 aatttcataa gcagagttga accagattca atggtggcca ctgtcataca cccaatggaa 660 gtggagaagg gcaaagagtc gtcacatttg ccttttttat atgactttga aataaatggt 720 gacaagattt tctttttccc tgatggaaac aagtctgaag gttacgaaca gccaaagagt 780 gcaggatggt ggttgagaat gtcaaaattc acatcttcaa aaggggtcta cagcctcact 840 cttttaagaa gcataggacc atttcatttg atacttttga ccaagcaaga tagagtggtg 900 gagtcaaaga ggttctttga tgattttagt ataatagatt tgccacattc tttcgaggaa 960 aggcatctta taaagagatt gaatctcgtg cttagatcag gttttttgag gaaaattgtg 1020 agttatatca agtcactcaa gaaaccagac agagaatctg ccattgcaaa acttaggatg 1080 atgagcgaag atgatttctc tatagaggaa atgctttttg ttgagggaat ggtggattca 1140 atgttgaaag atggctgcaa gagcatttgg gaaaaaggtt gggcagatgc tttagtcaat 1200 tacattgtgg acttattacc taaagctgtg caatcatatt tctttaggaa agattataaa 1260 gcgaaggaga atcttgatct actgctcaat ctcaattcgc ttagtatcaa actggacact 1320 gttccttatg atttcagttc atttgtacca aaagaaaatg tctcattaag aaaggaattg 1380 gatgccctgc tggacaataa taatggagtg caaaagggat tactaaacaa caaaagcaga 1440 agtgaatttc ttttccaacg gggttcaagt gaatacagcg gaaggagggg tctcaatgat 1500 attttagttt ttgatggacc aaccataaat aatagtattc aaagctctat cttcgagtcg 1560 aatctaggta atttcttgaa tggtctaagt ccagagaacc acaaagctca catgaattcc 1620 atgaaagtca ttttgagtag agatcctagg tacaagattg attcaatgaa aagatctatg 1680 aggaattctt cattactgag gaataattat ggattcatca taacaaagag ccttaaaact 1740 caaagtattt ttgggcaata tggcgtggag atagtgtttg tggataagtc caaaaggaat 1800 caaattgata ttgtcatata catcataacg gcctgctatg ttatgcacag tcaaattgac 1860 aattcaattt cagagaattt ggattctgaa ctaacttaca cggagcagca taagctaaag 1920 gacctggcct tatcactctt tgaatgcaag tctttttcag atgaaataaa agatgagaat 1980 cactcatgca atgctagctc aagcagccat gttgagaaca ggaaatgtga ttctgatgtg 2040 attgatgaaa ggatcttctg caacttgagc aacaaatgtt gttttgaatc tatcatgaac 2100 gccatgagtt gggatttcat ggttttactt gacaaactca aaggttcaaa attcttaaaa 2160 ttgttgatag acgacaatgg tttgttagaa gaggaattgg ttgaaatggt tgattatttg 2220 gggctaagct ttaatcttat aaaccaatca ggttcaactg ttatctattc agaatccaat 2280 tctcatactt tggtattgtc aagcaatcac tgcatggctg ctgaaagcaa aagtgttatg 2340 aattggactt tgaatgaaaa ggctaacttt ctcaatttac ctggagtaag ctacataagg 2400 aagaatttgt accaaaaaga gagagccacc aagctgtatc gcagcctatg caaagggagt 2460 actggtgtgc ttttcaatgt tctaaacaag aaaaccaaag aaactgacag cacaaagtat 2520 aaaaatagaa ttttggaatt catgtctttt ttttttaatg atgatttcaa atttgaaaac 2580 cagattgaat cattacatga acctgtttac ggtttttttg gctttgctgg ctcaggtaaa 2640 agtagaaaca tacagaatta cataaatgac aatttcaaga atggtggaag agctaccata 2700 ataagtccga gaaatgagct tttgaaagat tggtcatcaa agataaagtg caataacaaa 2760 cacatacgaa tgatgacata tgaaaaggcc ttaactgtgt cctactcaaa tgatgagtta 2820 gtggtcattg atgagattgg tctattacca cctgggtata tatcactctt atcactgatt 2880 gttagaataa agacagagga gatatcacag aatgtcagac tttccaagag aaattttctg 2940 aaatttttga atagaacaga atctagatta gttctaattg gagaccacct gcagtgtagg 3000 tacttcaatg actctgacac tagattgcta gaacattcag atgagatcga ctttgtaatg 3060 gagcaagaag agattatcta tctgaattat agcctaagaa tggcaaagaa ccatcactac 3120 aaacctggag tcaaattctt tggagaaact gagtctaaga ctaccaggag gttcctaaat 3180 gtgttcgtcg ccaagaaagc catacctgat gcacaagttt tggtggcctc tcatgatgaa 3240 caagtgaggt tcagagaatt gggtgccaaa acctatggag aatcacaagg gctgacaatg 3300 gagcaggtta taatagtttt atcacctcca tccataaatt gttcagtata tatgtggaac 3360 gtggcaatga gcagatctac atgtgcagtt cattttgcac tgaatggttt tgattcaatt 3420 gatgatttct taaatagagt caagggcacc cctgtggcgt caatgatact aggcatggaa 3480 ttcgacatac atgctcagaa attcaaaact gacaaggatc caaaactaat aaaggtggaa 3540 agactatgtt tatcccagtc agatgtggaa aacaaacttg aaggtgatcc ttttttgaaa 3600 tctataattc catcattgga tgaagggttt cctattgatg ttgaatacaa agaggctaac 3660 attgagctac ctactccaaa aattcatcta ccaattgagt cgatagaaaa ccacatatgt 3720 tatgtttcat caatgattag gaacagggaa tacagagaat tcatcggaga tggatcaatg 3780 agtgagcagt ttccagattt ttggaagaaa ggtgaaccag gatatcttct tagccagcca 3840 gagagattcc aggccatatt tccaaaacat tccaatcaag attctctcac tttttttgct 3900 gctgtaaaga aaagattaaa gttttccagt ccacatgttg aaagggaaaa gtttgaaaaa 3960 gttagacacc ttggatccga gatgtttgac gtctttctta gcaaaatcaa tttggacaac 4020 agctataatc atgaactcat gcaaatgagt gtcaatgaat atattgaaaa gaaagtgtcg 4080 aaaacctcta acaccataaa gtctcactca tccaggtcag aaccagactg gaaattaaac 4140 gatgttttcc tctttatgaa aactcagctt tgtacaaagt acgaaaaaag attttgtgat 4200 gcaaaggcgg gacaaacttt agcatgtttc agccacatag tcttgaacag atttgcagct 4260 ccaactagat acattgaaaa aaaaataagt cagtgcttgc catctaatta ctacattcat 4320 caaaagaaaa attttgattg cctcaatgaa tgggtcatca ggaatgactt cagcgaatct 4380 tgcctagaga gtgactatga agcttttgat tcttcccagg attgcctaat attggctttt 4440 gagtatgagc ttttaaagta tatgggatgg aagcaggatc ttctggatga ttacttggat 4500 ctaaaattca acttgggctg tcgattaggc aatctggctg tgatgaggtt cactggtgag 4560 tttgggacct ttttgttcaa caccttggca aatatggttt tcacttttat gtcctatgaa 4620 ttgaatggaa aagaatccat atgctttgca ggggatgaca tgtgttgtaa caaagggatc 4680 aaaaaaagaa tagatggcaa gtttgatcac atcttgaaga ggctatcttt aaaagccaag 4740 gcaatgataa ccaatgaacc aaccttttgt ggttggagat taaccccatt tggtatatat 4800 aagaaaccag aattgatact tgaaaggttt ttaatagcaa tagaaaaagg gaggcttgtt 4860 gatgtcattg atagttatta tctggaatgc agctatgcct acagtttagg tgagagacta 4920 agtaaatgtt tttctgaaaa agattttgtt gctcactatt gctgtgtcag attggtgcat 4980 aaacacaaaa gcttgcttaa gggtctgagc cttattaaat ttaaggaaaa caaaaggttc 5040 tgcttctcat gcaaattgtc aactcaaaat cgttcattga caagttcgat ggaggacaaa 5100 agaatgttaa atgcattgga atatcagacg tctactcaga tggaggctat tcaaagaatg 5160 ataaggtcga cagtgcacag acctctgaaa gctccatatc aatcagggtc aaaggagaat 5220 cttcaagaat cattcaaggt gttccaatac ttgagccaaa tgtgcttgct gaggaaagag 5280 gcaagaaaaa gtactcaaag gttaacattg gagcaattgt cattagcata cacaagcttg 5340 ggtactattc aaaagaaaca tgcaagggaa agtgtatgct tgttgatgga agaagggtcg 5400 ggaagaatgg aattattcat tcctttggat ttgatatatc aaatgggccc gctcatttca 5460 tcgttgcacc taatgctgta tttgatatca atgatgaggt gttggataga gcctgtcaaa 5520 ttttcttcac ttttgaaaac gtgcagtata tacatggatc ttgtcctttt tccattgaaa 5580 tcggatcaat ttacaggatg tctaatgtct tcaattgtca ccatagactt ggagtcccag 5640 ggagaaaagg agccattgga aacactatcc aggaggtgca tggaactcgt attctgtttg 5700 aagatgaaga agatagaacc atctcccaaa tggaggaggc cagaatttca ggtctcatat 5760 caaatgctgg agttgaatca aacagagagt tgcatgaggg aaggaggagc tttatgtgcc 5820 catggaagaa acgtggaccc agtttttata gggattattg tatatcatct gagcttggat 5880 ccggctcaaa agatgtatgc aaatttaggt caagcactag tgacattgat gaacgaagaa 5940 tttttgagaa ctttctggat agttcggctg tcgctccctc tgaatcatca gactcacaga 6000 gttacatcag ggagaatggc caccgcagaa gctgctgcga atcaagcgtt gcaagattgg 6060 ataaacaatc aagaagggtt ccagggagaa gcttatggcg tgagaatgag gaaaatgaga 6120 agaaggacac ttctgaggaa ttattgggtg tcaacaatga agggcagttt tcagaatcta 6180 gggaatgcaa acacccctca gaatttcacg gatgctgaaa gcgtgacata tggtaggata 6240 atgagtgatt ttgctgcaca tgcttttggt attctcgctg aagagggatt ttcacctgcc 6300 acttcatatt caagtgtcgg aactaattac accatagact atggagcacc cgttggaagt 6360 accactataa ggtttaaccc ggctgaggtt gcaaggacct ttaagtatct ttatcaatcg 6420 tctcccaaca accttttcga aaacatgact tggaggcaat gtggtgaagc atttgcaact 6480 gatatagtta ggtacttcaa agagctacag cctgatgctc aaagctggtt ggtgaaatca 6540 aatcctgttc tggctggcaa tgcaccctgg gttgcactgg atgttacaga tggacttgat 6600 atacgtcatc tgaaccctga ggagaagaaa gtgatagcta gagcaaagaa tcatctgctc 6660 aggtccatgc agctcaaagg aaaagaatcc ttgagtgctg aagccctttt ggaaagctag 6720 actggaaaag agtctgtcaa cactcagagt tggcgctttc acgttggcat gaacgtgacc 6780 ttggtttgag gaaataaacc cgccccgttt gttaggaagg ttctttgggg gttgaaactt 6840 tagaaccaac tttcgctttt tcaattccta tattgtcagc gcatgggttt ttcttgttat 6900 tttcctttgt tttcttcttt tgcttttttc cgaagaaaaa aa 6942 //