ID HQ189431; SV 1; circular; genomic DNA; STD; VRL; 2764 BP. XX AC HQ189431; XX DT 01-FEB-2011 (Rel. 107, Created) DT 24-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Honeysuckle yellow vein virus isolate DJ, complete genome. XX KW . XX OS Honeysuckle yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2764 RX DOI; 10.1007/s10658-010-9716-8. RX AGRICOLA; IND44488574. RA Wang Y., Ji J., Oh T.-K., Oh S., Kim S.H., Lee H.J., Shim M.Y., Choi C.W., RA Kim S.H., Kim I.-S., Kim Y.S.; RT "Occurrence of Honeysuckle Yellow Vein Virus (HYVV) containing a RT monopartite DNA-A genome in Korea"; RL Eur. J. Plant Pathol. 129(3):361-370(2011). XX RN [2] RP 1-2764 RA Kim S.H., Oh S., Oh T.K., Kim S.H., Kim Y.S., Choi C.W.; RT ; RL Submitted (27-AUG-2010) to the INSDC. RL Department of Biology & Medicinal Science, Pai Chai University, 14 Yeon Ja RL 1 Gil Seo-gu, Daejeon, Chungnam 302-735, South Korea XX DR MD5; 72e90e15845bffd85b879c52dd01f7ee. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Honeysuckle yellow vein virus" FT /host="honeysuckle" FT /isolate="DJ" FT /mol_type="genomic DNA" FT /country="South Korea:Dangjin" FT /collection_date="23-Aug-2009" FT /identified_by="Chang Won Choi" FT /PCR_primers="fwd_name: DJ-F, fwd_seq: FT atgtgggatcctttacttaacga, rev_name: DJ-R, rev_seq: FT ctcacaccgttacaattagggct" FT /db_xref="taxon:240865" FT gene 138..479 FT /gene="V2" FT CDS 138..479 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /note="nonstructural protein; cell-to-cell movement" FT /db_xref="GOA:E9M493" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E9M493" FT /protein_id="ADW09064.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTVGYDLIRDL FT IGVIRAKNYVEASSRYRDFHSRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSKAHV FT QEAQDVQNV" FT gene 298..1071 FT /gene="V1" FT CDS 298..1071 FT /codon_start=1 FT /gene="V1" FT /product="capsid protein" FT /note="encapsidation" FT /db_xref="GOA:E9M494" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E9M494" FT /protein_id="ADW09065.1" FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYANRASAPIALVTNKRRSW FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMFENE FT PSTATVKQELRDRLQVLHRFSATVTGGQYASKEQAVIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMAATHSSNPVYATLKIRVYFYDSVQN" FT gene complement(1068..1472) FT /gene="C3" FT CDS complement(1068..1472) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:E9M495" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E9M495" FT /protein_id="ADW09068.1" FT /translation="MDSRTGVTITAAQAWNGAYIWTVPNPLYFKITKHVQRPFNMEQDI FT ITLQIQFNHNLRSQLSLHKCFLTFNIWTLLHPQTSHFLRVFRTQVLKYLDNLGVISINN FT VIRAVDHVLYNVLEGTEYVQTLHDIKFKLY" FT gene complement(1213..1620) FT /gene="C2" FT CDS complement(1213..1620) FT /codon_start=1 FT /gene="C2" FT /product="transactivator protein" FT /note="transactivator for gene expression" FT /db_xref="GOA:E9M496" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E9M496" FT /protein_id="ADW09067.1" FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVAL FT GCANHGFTHRGHHHCSSGMEWRVYLDSAKSPIFQNHEARSTAIQHGTGHNNSTDTIQPQ FT PQISTESTQVLPDIQYLDSLTSSDLAFLEGI" FT gene complement(1520..2611) FT /gene="C1" FT CDS complement(1520..2611) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:E9M497" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E9M497" FT /protein_id="ADW09066.1" FT /translation="MAPPKRFQINSKNYFLTYPHCSLTKEEALSQIQALNTPTNKLFIR FT ICGELHEDGSPHLHILIQFEGKYRCTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKTYM FT EKDGDVIDSGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDFVLQFH FT NLNSNLDRIFSPPLEEFVCPFLSSSFDQVPEELEAWAAENVRDSAARPWRPVSIVIEGD FT SRTGKTMWARSLHPRHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEEKNAALKAWAIKNATFVTLYGS FT LYSGTHQGATQIREEESTSQAED" FT gene complement(2161..2454) FT /gene="C4" FT CDS complement(2161..2454) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /note="nonstructural protein; cell-to-cell movement" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E9M498" FT /protein_id="ADW09069.1" FT /translation="MGALISTSSSNSRENTDAQINDSSISYPHPGQHISIRTFRELKAR FT RTLRPTWKKTETSLILEFSKSMEDQLEEVASLPTTHMPRQSTQDQSHRRCLY" XX SQ Sequence 2764 BP; 722 A; 546 C; 651 G; 845 T; 0 other; accggatggc cgcccgaaat ttcgtggtgg tccccccctt gtcggccaat gagatttgtg 60 ctgtggaagt aagataagtg gaaagtgacg tgtgcttttg tctttatata cgtcagccct 120 aattgtaacg gtgtgagatg tgggatcctt tacttaacga tttccctgaa accgttcacg 180 gtttcaggtg tatgctagcg gttaaatacc tccttcttgt agaggctacg tattctccgg 240 atacggtggg ttacgatctg atccgtgatc ttataggtgt gattcgtgcc aagaattatg 300 tcgaagcgtc cagcagatat agggattttc actcccgtct ccaaggtacg gcgccgtctg 360 aacttcgaca gcccgtatgc caaccgtgcg agtgccccca ttgccctcgt cacaaacaaa 420 aggagatcat gggctcaaag gcccatgtac aggaagccca ggatgtacag aatgtataga 480 agccctgatg tgcctaaggg gtgtgaaggc ccgtgtaagg tccagtcctt tgagaagaaa 540 aatgatgtgg gtcattctgg taccctcctc tgtgtgtctg atattacccg tggtaatggg 600 cttactcatc gtgttgggaa gagattttgt ataaaatctg tttatattat tggtaaaata 660 tggatggatg aaaatattaa gaccaagaat cacactaata atgtgttatt ctggttagtt 720 agagatagaa gacctggttc aacgccatat ggttttcagg aggcattcaa tatgtttgag 780 aatgagccta gcacagctac tgttaaacag gaattaaggg atcgtttgca ggttttacac 840 aggtttagtg caactgttac tggtggacaa tatgcgtcta aggaacaagc tgtcattaag 900 aggttctgga agttgaatca tcacgtcact tacaatcatc aggagcaggc taaatatgag 960 aatcatacgg aaaatgcttt attattgtat atggctgcta ctcattccag taatccagta 1020 tatgctacat taaaaatcag agtgtatttc tatgattcag tacagaatta ataaagtttg 1080 aattttatat cgtgaagtgt ttgtacatac tctgttccct ctaatacatt atacaataca 1140 tgatcaactg ctctaattac attgttaatt gaaattacac ctaaattatc taaatacttc 1200 aacacttggg tcctaaatac cctcaagaaa tgcgaggtct gaggatgtaa gagagtccaa 1260 atattgaatg tcaggaagca cttgtgtaga ctcagttgag atctgaggtt gtggttgaat 1320 tgtatctgta gagttattat gtcctgttcc atgttgaatg gccgttgaac gtgcttcgtg 1380 attttgaaat ataggggatt tggcactgtc cagatatacg cgccattcca tgcctgagct 1440 gcagtgatgg tgacccctgt gcgtgaatcc atggtttgcg caacccaatg cgacgtaaat 1500 agaacacccg cagtttaaat caatcctccg cctgcgaggt gctctcctct tctctgatct 1560 gtgtcgcacc ttgatgggta cctgagtaga gtgagccgta gagggtgacg aaggttgcat 1620 ttttaattgc ccatgctttt aaggctgcgt tcttctcttc gtctaagtac tcggtgtatg 1680 atgacgttgg gcctggattg cagaggaaga ttgttgggat accaccttta atttgaattg 1740 gtttcccgta cttggtgttg ctttgccagt ccctttgggc ccccatgaac tctttaaagt 1800 gctttaggta gtggggatcc acatcatcaa tgacgttgta ccatgcgtcg ttgctataaa 1860 ccttggggct taagtcaaga tggccacata gatagttatg acgtggatgt agtgacctgg 1920 cccacatagt tttccctgtc ctgctatccc cttctatcac aatactcaca ggtctccacg 1980 gccgcgcagc ggaatcccta acattctcgg cagcccatgc ctcaagttct tcgggaactt 2040 gatcaaaaga agaagataaa aatggacaaa caaattcctc caacggagga gaaaaaatcc 2100 tatctaaatt actatttaaa ttatgaaact gtaaaacaaa atctttggga gctttctccc 2160 tcaatataga caacgccgat gactttgatc ctgagttgat tgcctcggca tatgcgtcgt 2220 tggcagactg gcaacctcct ctagctgatc ttccatcgac ttggaaaact ccagaatcaa 2280 tgacgtctcc gtctttttcc atgtaggtct taacgtccga cgagctttta gctccctgaa 2340 tgttcggatg gaaatgtgct gacctggatg gggatacgag atcgaagaat cgttgatttg 2400 tgcatctgta ttttccctcg aattggatga ggatgtggag atgagggctc ccatcttcgt 2460 gtagttctcc gcagattctt atgaataatt tgtttgttgg tgtatttagg gcttggattt 2520 gggaaagggc ctcttctttg gttagagagc agtgtgggta tgtaaggaag taatttttag 2580 aatttatttg aaatctttta ggcggagcca ttgacttggt caattggtac caattgatct 2640 ctctcatggt atcggtacat tggtaccaat atatatggtg gtacctaatg gcattcttgt 2700 aatttggtaa agtggagcgt gctttagaaa ttcaaattgg taaagcggcc atccgtataa 2760 tatt 2764 //