ID HQ180391; SV 1; circular; genomic DNA; STD; VRL; 2707 BP. XX AC HQ180391; XX DT 13-OCT-2010 (Rel. 106, Created) DT 18-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Tobacco leaf curl Pusa virus strain IN:Pusa:Tb:10, complete sequence. XX KW . XX OS Tobacco leaf curl Pusa virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2707 RX DOI; 10.1007/s11262-011-0631-7. RX PUBMED; 21667126. RA Singh M.K., Singh K., Haq Q.M., Mandal B., Varma A.; RT "Molecular characterization of Tobacco leaf curl Pusa virus, a new RT monopartite Begomovirus associated with tobacco leaf curl disease in RT India"; RL Virus Genes 43(2):296-306(2011). XX RN [2] RP 1-2707 RA Singh M., Mandal B., Varma A.; RT ; RL Submitted (21-AUG-2010) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, New Delhi 110012, India XX DR MD5; 364bd271ed5388864418dadf140591ae. XX FH Key Location/Qualifiers FH FT source 1..2707 FT /organism="Tobacco leaf curl Pusa virus" FT /segment="DNA-A" FT /host="Nicotiana tabacum" FT /strain="IN:Pusa:Tb:10" FT /mol_type="genomic DNA" FT /country="India:Pusa Bihar" FT /isolation_source="leaf" FT /collected_by="Manoj Kumar Singh" FT /collection_date="2009" FT /identified_by="Manoj Kumar Singh" FT /clone="Tb1" FT /db_xref="taxon:905054" FT gene 105..455 FT /gene="AV2" FT CDS 105..455 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="viral movement" FT /db_xref="GOA:E3VQ39" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E3VQ39" FT /protein_id="ADO20895.1" FT /translation="MWDPLVNEFPDTVHGLRCMLAKKYVQEVQKTYSPDTIGNDLFCDL FT IHLLNTKNYEQASSRYSHFYSRLQGTSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHV FT QKAQDLQNVQKP" FT gene 265..1047 FT /gene="AV1" FT CDS 265..1047 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="required for encapsidation and vector transmission" FT /db_xref="GOA:E3VQ40" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E3VQ40" FT /protein_id="ADO20896.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRTW FT VNRPMYKKPKIYRMYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTH FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATVKNDLRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQNYKY" FT gene complement(1035..1433) FT /gene="AC3" FT CDS complement(1035..1433) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="transcription enhancer protein" FT /db_xref="GOA:E3VQ41" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E3VQ41" FT /protein_id="ADO20897.1" FT /translation="MDSRTGELITATQAESGVYTWTVKNPLYFKISQHHERPFLSNNDI FT ITLQVQFNYNLRKALGIHQCFLICRIWTRLRPQTLRFLRVFKYQCMKYLDSLGVISINN FT VIRAISHVLYDVWRAHDAHITYNKIQYL" FT gene complement(1174..1581) FT /gene="AC2" FT CDS complement(1174..1581) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="trans-activator protein" FT /db_xref="GOA:E3VQ42" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E3VQ42" FT /protein_id="ADO20898.1" FT /translation="MQNSSPSRSHCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGL FT DCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPAPRETISIQQRHNNLTSPVQLQ FT PEESVGDTPVFSNLPNLDSFTSSDLAFLKSI" FT gene complement(1487..2527) FT /gene="AC1" FT CDS complement(1487..2527) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replication initiation protein" FT /db_xref="GOA:E3VQ43" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E3VQ43" FT /protein_id="ADO20899.1" FT /translation="MPEIISSLIHSAHSPKRKHFPNYETYPHLQIKNSSRSAESFTKNG FT SPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMDKDGDTLEW FT GEFQIDGRSARGGQQSANDAYAKAINTGSKSEALSVIKELAPKDYVLQFHNLNANLDRI FT FAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWA FT RSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKDSWGPKGTGKEHKVREAL FT QIKWNPTISLNPGPKSSIREDEEKNSALKDWALKNAEFITLTEPLYSGTHQSPAQNSQE FT ETSSQA" FT gene complement(2107..2397) FT /gene="AC4" FT CDS complement(2107..2397) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="required for viral pathogenicity and symptom FT development" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E3VQ44" FT /protein_id="ADO20900.1" FT /translation="MGLLISTCLSSSKGNTNARITDSSTWSPQPGQHISIRTFRELNRV FT PMSSPIWIRTETPSNGESFRSMEDLQEGDNNQPMMLTPRRLTQEVSRRLLA" XX SQ Sequence 2707 BP; 741 A; 560 C; 606 G; 800 T; 0 other; accggatggc cgcgaaattt tttaaagtgg gcccttgtgt cggccactag aaacgctccc 60 tcagaggtaa attagtggtg gttatagctc acttcatttc aaacatgtgg gatccattag 120 taaacgagtt cccagatacg gttcatggtc tacggtgtat gctagccaag aaatacgtac 180 aagaagttca gaagacgtat tctcctgata ctattgggaa cgatttattc tgtgatctta 240 tacatctctt aaatactaaa aattatgagc aagcgtccag cagatatagt catttctact 300 cccgcctcca aggtacgtcg ccggctgaac ttcgacagcc catatgtcag ccgtgctgct 360 gcccccactg tcctcgtcac aaacaaaagg aggacatggg tcaatcggcc catgtacaaa 420 aagcccaaga tttacagaat gtacagaagc cctgatgtgc ccaaaggatg tgaaggccca 480 tgtaaggtcc agtcctatga acagagacat gatatagccc atacaggcaa ggtcatatgt 540 gtttctgatg ttactcgtgg taatgggctt actcatcgtg ttggtaagcg attctgtgtg 600 aagtccattt atgttttggg gaagatctgg atggacgaga acatcaagac caaaaaccat 660 acgaacactg tcatgttcta tttggttcgt gatagaaggc cctttggtac tgctatggac 720 tttggacagg ttttcaacat gtatgataat gagcccagta ctgctacggt gaagaacgac 780 ctgagagatc gattccaagt gttaaggaaa tttacggcaa cggttacagg tggtcagtat 840 gcatccaagg aacaggcgtt agttaggaag ttcatgaaga ttaacaatta tgtagtctat 900 aatcatcaag aagctgccaa gtatgacaat catactgaga atgctcttct attgtatatg 960 gcttgtactc atgccagtaa cccagtgtat gcaacattga agatcagaat ctacttctat 1020 gattctgttc agaattataa atattgaatt ttattatatg tgatatgagc atcatgtgcc 1080 ctccatacat catacagtac atgggatata gccctaatta cattgttaat actaataacg 1140 cctaaactat ctaagtactt catacattga tatttaaata ctcttaagaa acgcaaggtc 1200 tgaggacgta aacgagtcca gattcggcaa attagaaaac actggtgtat ccccaacgct 1260 ttcctcaggt tgtagttgaa ctggacttgt aaggttatta tgtcgttgtt ggatagaaat 1320 ggtctctcgt ggtgctggga tatcttgaaa tagaggggat ttttgaccgt ccaggtatac 1380 acgccactct ctgcctgagt tgcagtgatg agttcccctg tgcgtgaatc catgtgatgc 1440 gcagtcaagt ccaaaatagt aagagcaacc gcaaggaaga tctattctac gcctgcgaac 1500 tggtctcttc ttggctattc tgtgctggac tttgatgggt acctgagtac agtggctccg 1560 tgagggtgat gaattctgca ttcttgagtg cccagtcttt gagtgctgaa ttcttttcct 1620 cgtcctctct tatagatgat ttcgggcctg gattcagaga gatagtggga ttccacttta 1680 tttgcagggc ttcccgtact ttgtgttctt tgccagtccc tttgggcccc catgaatctt 1740 taaagtgctt tagatagtgg ggatcgacgt catcaatgac gttgtaccag gcatcattac 1800 tgtacacctt tggactcagg tcaaggtgac cacataaata gttatgtgga cccagagacc 1860 tggcccacat ggtcttccct gttctactct caccctctat gactatactg acgggtctcc 1920 aaggccgcgc agcggcatcc cttacatttt ctgaaaccca gcattcaagt tcttctggaa 1980 cttgatcgaa tgaagaagat aaaaaaggag aaacaaaaac ctctaaagga ggtgcaaaaa 2040 tcctatctaa attagcattt aaattatgaa attgtaatac ataatcctta ggtgctaatt 2100 ccttaattac gctaagagcc tccgacttac ttcctgtgtt aatcgccttg gcgtaagcat 2160 cattggctga ttgttgtccc cctcttgcag atcttccatc gatctgaaac tctccccatt 2220 cgagggtgtc tccgtcctta tccatatagg acttgacatc ggaactcgat ttagctccct 2280 gaatgttcgg atggaaatgt gctgacctgg ttggggagac caggtcgaag aatctgttat 2340 tctggcattt gtatttccct tcgaactgga taagcacgtg gagatgagga gacccattct 2400 tcgtgaagct ctctgcagat cttgatgaat tttttatttg taggtgtgga taggtttcgt 2460 aattgggaaa gtgcttcctc tttggtgagt gagcactgtg gataagtgag gaaataattt 2520 ctggcattta ttaagaaacg ctttggaggt gccatttgac ttggtcaatc gggtctcagc 2580 aaactggctc atgcaatcgg ggaatgggtc tcaatatata cttgggacct aaatgtcatt 2640 attgtaattc tgaaaagaaa ttcaaaattc aaatttgaaa tccaaaagcg gccatccgta 2700 taatatt 2707 //