ID HQ166713; SV 1; linear; genomic RNA; STD; VRL; 6577 BP. XX AC HQ166713; XX DT 02-JAN-2012 (Rel. 111, Created) DT 02-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Nerine virus X isolate AL-1 replicase protein, triple gene block protein 1, DE triple gene block protein 2, triple gene block protein 3, and coat protein DE genes, complete cds. XX KW . XX OS Nerine virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6577 RA Chiang F.L., Chen C.C., Chang C.A.; RT "Molecular characterization of an isolate of Nerine virus X infecting RT African lily plant"; RL Unpublished. XX RN [2] RP 1-6577 RA Chiang F.L., Chen C.C., Chang C.A.; RT ; RL Submitted (20-AUG-2010) to the INSDC. RL Plant Pathology, Taiwan Agriculture Research, 189 Chung-Cheng Road, Wu RL Feng, Taichung 41301, Taiwan ROC XX DR MD5; db942809125dadca8648e0ab67b43f1e. XX FH Key Location/Qualifiers FH FT source 1..6577 FT /organism="Nerine virus X" FT /host="African lily" FT /isolate="AL-1" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:333348" FT CDS 88..4602 FT /codon_start=1 FT /product="replicase protein" FT /note="ORF 1" FT /db_xref="GOA:G9B9W9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9B9W9" FT /protein_id="AEM23890.1" FT /translation="MSKVRAALERLNDCSLKAVLQNEAYKEIRPTLREATLINPFAIDD FT AAADSLESLGIITNPYAVKLHTHGAVKAIENQMLSIVGHNLPKRPVTYMFLKKSKLRYL FT RRDPRISDVFQNYEIEPRDVARYPPETVLKRFTVVNTDVAYISDTLHFLRPTFLTALFE FT RSHNLQTLYATMVLPPEALHKLPSLEPNLYQINYNFDGFQYIPGRHGGGAYHHEFKDLQ FT WLRVGKIKGPTTTITCQLLESMGANHLFVFRRGDLLTPRVRTFRCDEHVTLPQIFHPTN FT RNASRPIKHTLAAQLLLYCESIADLKLKDVFAKVRQLVKTNDLPQLQPTEIVHIANYFY FT FVGHLGAVNTYEDILSMSLFRKVLQPIKTRIIQIWEKLFGERKFEQLMKALNWQTFTLS FT VQVTCGRSYMYGWDNANIRPDTLPDFVEDEHTPETETTERPPNPVIAPAVTGFACSPNP FT SSSSPPPSTHPSTSKSGYKVMYRPKVKNTPTLTQHKSQVSNQDAATHSGNNTPEQAGQN FT SSTSTSANAGPAQIQATHKADKGKATLKEDTPSSSSSGLEAHIIEDYMDTYSRNDAPPL FT TAEVDPFLRVNEPEPVTNSEKPDQQTESSKATCTLETDEPLLNFMSPPDWHIEALNRNV FT PHHEDDAAHTTSTPERAPEQETTEDLQVSPNNDGKPEEPLPWQPWLNILKSVGFKGNET FT QRDKLDQIIMPISDVRLLTRQEFVPGLPHKLFSLLKHIQRLPVQSKISSRRAKCYASDV FT KNGRTGLLTRHQSDEWKETFSTLTEMEAPSIWVSVIHGAGGSGKSQALQEYMRSLKSDQ FT KEITIILPTNELRIDWEGKVPHMNTYAFKTFERALIEPVEDICVFDDYGKLPPGYIEAF FT CMLHVNITCLILTGDSRQSVYHETNAQALIAHLPHAIMQFEPLCRYYLNATHRNPRNLA FT NALGIYSEAPGRTTITMSSRPMTGWPILSPSCAKKICFGEMGHVAHTYAGCQGLTAPKI FT QMVLDNNTPLCTTEVMYTALSRAVHNIHFINTGANSKEYWTKLDATPYLKTFLETVREK FT VVTEDEPPEPKVREEPVRTHVAPDNENLILEELIXELPEKHARELYDNHHGHXNAIQTE FT DPVIQLFQHQQAKDETLLWATIEARIKISSPEANLAEFILKRDXGDILFENYAIAMNVP FT KEPLPFETTLWQACREEVEKTYLAKPVSALINGSLRQSPDFHPDAISLFLKSQWMKKVE FT KLGCLHVKPGQTIASFMQETVMVYGTMSRYMRRIRQQHQPAEIFINCEKNPEDMTQFIK FT QGWNFQRQAYSNDFTAFDQSQDGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGT FT LAIMRLSGEGPTFDANTECSIAYHHTRFHVPSNTRRFFAGDDSAQDCPAVEKSSFQAIS FT GRMSLTSKPVSYAQKPGKFAEFCGWSITPLGAIKDPLKLYASLELACRTDNKENVAQSY FT ALDAKHAYQLGDALHDILTPEQFVMHQKTIRMLHELKVGNLLK" FT CDS 4635..5324 FT /codon_start=1 FT /product="triple gene block protein 1" FT /note="ORF 2" FT /db_xref="GOA:G9B9X0" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G9B9X0" FT /protein_id="AEM23891.1" FT /translation="MENIIQQITNPLHTHIIPNIQTIIIHCCAGAGKTTFIRELLEQFP FT EVQAYTHSQHLAAEKTISGRNFHHFSEYQPGYLDVIDEYLAGPIPETCHFCFADPYQYN FT IDALPAHFICNKSYRFGTLTADYLNSLGYQVRSAGGSDSIRFIDLAHWEPEGICITQDS FT DILNLLTRHGISAYHPCETLGLQFNCVDYLVPKLPTPATADANTYLALTRHSSRLNVVS FT DAADSAT" FT CDS 5302..5661 FT /codon_start=1 FT /product="triple gene block protein 2" FT /note="ORF 3" FT /db_xref="GOA:Q2V0R8" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q2V0R8" FT /protein_id="AEM23892.1" FT /translation="MPLTAPPDYTHILPIAIVSIAVALSLYTITRNTLPHTGDNIHHFP FT HGGRYRDGTKSITYCPPQRNLSPFNSTGYSIIPTALAILLPAAIYLSSKCFNSRTHPHS FT CSHCQPNSATMRGTS" FT CDS 5438..5800 FT /codon_start=1 FT /product="triple gene block protein 3" FT /note="ORF 4" FT /db_xref="GOA:G9B9X2" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:G9B9X2" FT /protein_id="AEM23893.1" FT /translation="MEAATGTEPSLSPIARHNAIYHRLTAPVTASSPQHSPSYSQRQFI FT LALSASIAALILTLAVIASQTPPPCVVHLDGNSAHIENCSNQPELPELVNAASNHVRGL FT IKPELEIEPHCSYGKH" FT CDS 5787..6449 FT /codon_start=1 FT /product="coat protein" FT /note="ORF 5" FT /db_xref="GOA:G9B9X3" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G9B9X3" FT /protein_id="AEM23894.1" FT /translation="MANTSASAALPAQSKTDDMTAPPDNKDLEALQYIPESNAVATADQ FT IHAIAALWKSIGVPAAKLGPYAWDLARHCAMFSHHPSQIVGTPPGESKLTRQMLAASIK FT SICTLRQFCMYFAPVVWNMMILTDQPPANWSKLNYRESERFAAFDFFDGVTHTAALHPI FT GGLIRPPSEAERVANAAQKGLHIYKAAQQKNQLTSTAVEFTRAQVGSAPSLTLLPPN" XX SQ Sequence 6577 BP; 1937 A; 1890 C; 1331 G; 1416 T; 3 other; aaaaccaaca caacctaaaa ccaaacccaa caacgcacaa caccttacaa ggtcctctag 60 tgttgagaaa actccgacgc ccttgcaatg tcgaaagtgc gtgccgccct agaaaggctc 120 aatgattgtt ctctcaaagc agtgttacaa aacgaagcgt acaaagaaat cagacccaca 180 ctgcgcgaag ctacactcat caatcctttc gccatcgatg acgctgctgc cgattctctg 240 gaaagcttag gtattatcac taatccctat gccgtcaaac tacacactca cggagcagtt 300 aaagccattg aaaatcaaat gctgtctatc gttggccaca acctacccaa aagaccggta 360 acttatatgt tccttaagaa gagcaagctg cgctacctcc gacgggaccc tagaatctcc 420 gacgtcttcc aaaactacga gattgagcca cgcgatgtgg cccggtaccc ccccgagaca 480 gtgcttaaga ggttcaccgt tgtaaacaca gatgttgctt acatcagtga cacccttcac 540 ttcttaagac ccaccttttt aacggctctt tttgagaggt ctcacaactt gcagacgctc 600 tacgccacca tggtattacc cccggaagct ctgcataaac tcccctcact ggaaccaaat 660 ttgtaccaaa tcaactacaa ctttgatggg ttccaatata taccaggacg ccatggtggc 720 ggggcttacc accatgaatt taaggatcta caatggttaa gagtgggaaa gattaaagga 780 cccaccacca ccataacttg ccaacttcta gaatccatgg gtgccaatca tctcttcgta 840 ttccgacgtg gggacctact caccccccgg gtacgaacgt tcagatgcga tgaacatgtt 900 acactacccc agattttcca ccccactaat cgcaatgcgt ctaggcccat caaacacact 960 ctagcagctc aactgttgct atactgtgag agcattgccg atcttaagct taaagacgtc 1020 ttcgccaaag tgaggcagtt ggtgaagact aatgatttgc cccagcttca gcctactgaa 1080 atagtgcaca tagcaaacta tttctatttc gtaggccatc tcggcgcagt gaacacttac 1140 gaagacatac tgtcaatgtc actattccga aaagtactgc agcctatcaa aacccgcata 1200 atccaaatct gggagaagct gttcggagaa cggaaatttg aacagctgat gaaagcacta 1260 aactggcaaa cattcacctt gtccgtacaa gttacctgcg gacgcagcta catgtacggc 1320 tgggacaacg ctaacatcag accagacact ctccctgact tcgttgagga tgagcacact 1380 ccggaaactg aaacgaccga gcggccaccg aatccagtta tcgctccagc cgtgactggt 1440 tttgcttgca gcccaaaccc atccagtagc tcgcctccac catccaccca tccaagcacg 1500 tctaaaagtg gttacaaggt gatgtacaga cccaaagtga agaatactcc cacgctcact 1560 caacataaaa gtcaggtatc caatcaggat gctgcgactc attccgggaa taacacgcct 1620 gaacaggctg gtcagaactc ctcaacttcg acgtccgcca atgctggacc tgctcagatc 1680 caggccaccc acaaagcgga taaaggcaaa gccaccctga aagaagacac cccttcctct 1740 tcaagtagtg gtctagaagc ccacattata gaggattata tggacacgta cagccgcaat 1800 gacgcgcctc ccttgacggc ggaagtggat cccttcttaa gagtgaatga gcctgagccc 1860 gtaaccaatt ctgaaaaacc agaccagcaa acggagagct ctaaagccac ctgcactctt 1920 gagacggatg aaccactgct gaacttcatg agcccaccag attggcacat cgaagcactc 1980 aaccggaacg tgccacacca cgaagacgat gcagcccaca ccacctccac ccctgaaaga 2040 gctcccgagc aggaaaccac tgaagaccta caagtgagtc ccaacaatga cggaaaacca 2100 gaagagccac tcccatggca accctggcta aacatactca aatctgtggg cttcaaaggt 2160 aacgagacac agcgggataa actggaccag attatcatgc ctatttccga cgttaggctg 2220 cttacacgtc aagaattcgt gcccggtctc ccacacaagc tcttctccct gctcaagcat 2280 atccaaagat tgcccgtaca atccaaaatc agctctaggc gtgctaagtg ttacgccagc 2340 gacgtcaaga acggcagaac tggccttctt acaagacacc agtccgacga gtggaaagaa 2400 acgttcagta cgctcacaga aatggaagct ccatccatat gggtcagcgt tatccacgga 2460 gcaggtgggt ctggaaaatc tcaggcgctc caagaataca tgcgcagttt gaagagtgac 2520 cagaaagaga taacgattat attgcccact aacgagcttc gcatagattg ggaaggaaaa 2580 gtgccccaca tgaacaccta cgctttcaag accttcgaaa gagctctgat tgagccagtc 2640 gaagacatat gcgtgtttga tgactatggc aaactcccac ccggctacat agaagctttc 2700 tgcatgctgc atgtcaatat tacttgcttg atattaacag gtgactccag gcaatccgtc 2760 taccatgaga ctaatgcaca agcgcttata gctcacctcc cacatgctat catgcagttc 2820 gaacccctat gccgatacta cttgaacgcc actcatcgca atccacgcaa tttggctaat 2880 gcgctaggca tttactctga agcacccggg cgcacaacca taaccatgag ctccagacct 2940 atgactggct ggcccatatt atcccctagc tgcgccaaga aaatatgctt tggagaaatg 3000 ggccacgttg ctcacactta cgcagggtgc caagggctga ctgctcccaa aatccaaatg 3060 gtcctagaca acaatactcc attatgcaca acagaagtta tgtacactgc actttcccgt 3120 gcagtacata acatacattt catcaacacc ggggccaact caaaggagta ttggactaag 3180 ctggacgcaa ctccttacct taaaactttc ctggagactg tcagagagaa agtggtgact 3240 gaagatgaac ctcctgagcc taaagtccgt gaggagcccg ttcgaacgca cgtggctcca 3300 gacaatgaaa acttgattct agaggagtta atcnccgaac tccctgagaa acatgcgcgc 3360 gagctctacg acaatcacca cgggcacnct aatgctatcc aaactgaaga cccagtgatc 3420 cagcttttcc aacatcaaca agccaaagat gaaacgttac tctgggccac catcgaagct 3480 aggattaaaa tctcctcacc agaagcaaac ttggctgagt ttatcctaaa gcgtgacrta 3540 ggtgacatcc tcttcgaaaa ctatgccatt gccatgaatg tgcccaagga gcctctgcct 3600 tttgagacaa cactgtggca ggcttgtaga gaagaggtcg agaagactta tctggctaaa 3660 cccgtgtcag cactcatcaa cggatcactt aggcaatctc ctgactttca ccccgacgct 3720 atatcacttt tcctcaaatc acaatggatg aagaaagttg agaagttagg ctgcttacac 3780 gtcaagcctg gtcaaactat tgcctcattc atgcaggaga ccgtcatggt ctacggcacg 3840 atgtccaggt acatgaggag gatccgccaa caacaccaac cagctgagat attcatcaac 3900 tgcgagaaga acccagagga catgactcaa ttcataaagc aaggatggaa ctttcaaaga 3960 caggcctact ccaacgactt cacagcattc gatcaatctc aagacggagc tatgctccag 4020 tttgaagtaa tcaaagccaa gcactacgga gtacccgcgg acatcatcga ggggtatttg 4080 catattaaaa tgaatgcaaa aattttccta ggcacattgg cgataatgcg actttctgga 4140 gaagggccaa cttttgacgc caacaccgaa tgttccatag cctaccacca cacaaggttc 4200 catgtcccaa gcaacactcg cagattcttt gctggagacg acagtgccca agattgcccc 4260 gccgtggaaa aatcatcatt ccaagctata tccggcagaa tgagcttaac atccaaacct 4320 gtcagctacg cacaaaaacc gggtaagttc gcagagttct gcgggtggtc tatcacccct 4380 ttaggagcaa ttaaagaccc cttaaaactc tacgcctcac tcgagctagc gtgccgcact 4440 gacaacaagg aaaacgtagc gcaatcatat gctctagatg ccaaacatgc ttaccaacta 4500 ggtgatgcgc tacatgatat tctcaccccg gaacaattcg taatgcacca aaagacaatc 4560 cgcatgcttc acgaattgaa agtgggcaat ctcctaaaat aagcactaag cgggtttgta 4620 atttccttaa gccgatggaa aacataattc aacaaattac aaacccgctt cacacgcaca 4680 tcattcccaa tatccaaacc atcatcatcc attgctgtgc cggtgccgga aagacgacat 4740 tcatccgcga actattggag caatttcctg aagtccaagc gtacacacac tcacaacatc 4800 tcgcagcgga gaaaaccatc agcggcagaa atttccacca tttctctgag taccagccgg 4860 ggtatctcga cgtcattgac gagtacttgg ccggacccat acccgaaacc tgccactttt 4920 gtttcgctga tccgtaccaa tacaatattg atgcgttgcc cgcccatttc atatgcaata 4980 agtcatacag attcggaaca ctgacagccg actacttgaa ctcactagga taccaagtcc 5040 gttcggccgg cggtagtgat tccatcagat ttatcgactt agcacattgg gaaccagaag 5100 gaatctgcat aacacaagat agtgacatcc ttaaccttct gacaagacac ggcatttcag 5160 cataccatcc ctgcgaaaca ctaggacttc aatttaattg cgttgattac ttggtgccaa 5220 agctacccac gcccgccact gctgacgcta acacatatct agcgctcact aggcacagct 5280 caaggctgaa cgtagtttca gatgccgctg acagcgccac ctgattacac acatatattg 5340 ccaattgcca tagtgagcat agcggtggct ctttccctgt atacgataac cagaaacact 5400 ttgcctcaca caggtgataa catacaccac tttccccatg gaggccgcta cagggacgga 5460 accaagtcta tcacctattg cccgccacaa cgcaatttat caccgtttaa cagcaccggt 5520 tacagcatca tccccacagc actcgccatc ctactcccag cggcaattta tcttagctct 5580 aagtgcttca atagccgcac tcatcctcac tcttgcagtc attgccagcc aaactccgcc 5640 accatgcgtg gtacatcttg atggcaactc cgcgcacatt gaaaactgca gtaaccagcc 5700 agagctcccg gagctggtta acgcggcttc aaatcacgtt cgaggtttaa ttaaaccaga 5760 acttgaaatc gaaccgcact gcagttatgg caaacactag tgccagcgca gctcttcccg 5820 cacaatccaa aactgacgac atgaccgccc cgcctgacaa taaagacttg gaggcactac 5880 agtacatccc cgagtccaac gccgtagcca ccgccgacca aatccacgcc atagctgctc 5940 tctggaaatc cattggtgtt ccagctgcaa agttgggacc ttacgcttgg gacttagccc 6000 gccattgtgc gatgttcagt catcatccca gccaaatcgt gggcacccca ccaggagaga 6060 gcaaactcac acgccagatg ctagctgcat caattaaaag catctgcacg ctccgccaat 6120 tctgcatgta ctttgctccg gtagtctgga atatgatgat actcactgac cagcctccag 6180 cgaactggtc caaactcaac taccgtgaat cagaaagatt cgctgctttc gacttctttg 6240 acggagttac tcacacagca gctctgcacc ctatcggagg gttgatacgc ccgccaagcg 6300 aagcagaacg tgtcgccaac gcggcacaaa agggcttaca catctacaaa gcagctcagc 6360 agaagaatca actcacctcc accgcagtgg agttcacccg tgctcaagtc ggcagtgcac 6420 cctcactcac cctacttcca ccaaactaac accgccgtaa tttaataaat aaagcaagct 6480 tgccggagat aacgtgctcc gcccactggg ttttcacgtg ctaacataga gcgacttaat 6540 agctccctac gcataagatt taacacattt tacttat 6577 //