ID   HQ162274; SV 1; linear; genomic RNA; STD; VRL; 1674 BP.
XX
AC   HQ162274;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   03-FEB-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate Nam Dinh major capsid
DE   protein gene, complete cds.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1674
RA   Ha C.V., Le N.T., Do C.T.;
RT   "Expression of major capsid protein of Southern rice black streaked dwarf
RT   virus in E. coli";
RL   Unpublished.
XX
RN   [2]
RP   1-1674
RA   Ha C.V., Le N.T., Do C.T.;
RT   ;
RL   Submitted (19-AUG-2010) to the INSDC.
RL   Research Centre for Tropical Plant Diseases, Hanoi University of
RL   Agriculture, Trauqui - Gialam, Hanoi, Vietnam
XX
DR   MD5; c4d9a3a1e574e1692c5d8b5b2ef96510.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1674
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="rice"
FT                   /isolate="Nam Dinh"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam"
FT                   /note="synonym: Rice black streaked dwarf virus 2"
FT                   /db_xref="taxon:519497"
FT   CDS             1..1674
FT                   /codon_start=1
FT                   /product="major capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:E9LZR3"
FT                   /protein_id="ADW24250.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNSLFHE
FT                   SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ
FT                   PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELSALDADK
FT                   SLLEQTWSGVSSFIETWKVKTKVKDEDQDEYELAGLSALRKGVDGNSVSSPYNDKKFID
FT                   WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI
FT                   TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYVKLGVEKAYHLAPVIMKKYNLTID
FT                   DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKADRDRLIKKATTANSSTSNSNSEHGQKIVLNKVTR"
XX
SQ   Sequence 1674 BP; 582 A; 294 C; 290 G; 508 T; 0 other;
     atggctgaca taagacttga catagcgccc gatcttatcc ataatggtgt gcctcaaaga        60
     ctttcagata cgataattct aaacaaccga ccaacaatca cacttctgtc tcacttcaac       120
     tctctttttc acgaatcaaa cattgtcaaa tcaccccaca tcgcgtcatc tcaaactact       180
     gttaatttat acattcgtaa gcatttattg actcgacttc atgatagatt acaaactgtc       240
     gaaaccagta ctctaccgaa cattactcaa cttaaagaac atattcaaag ttatttccgt       300
     aatgaacatc aacctatttt ccaaaccctg actaacaata atcttagtga tgaattttta       360
     ggtgtaacta cttttggttt aagtctattc gcaacttcaa agttggatgc agaacaaata       420
     gaacgagtac aaattgagac cctaactgaa ggaaacgtta cacttaaacc attctccgct       480
     gacggtttag aagtaatttt agatgatagt tacatcggaa taattggaaa aatttctggt       540
     ttagaggtac ataaattgct cgataaatgt tgtcgtgaag ttcctgctca aatgggaata       600
     ttaactgacg aagttaaact tttaatacgt tccggaaaat taagaattga cggtggatac       660
     gatttcaatt gtcctgctag tacaacagac gtgacgcact atggcggtta tgaccaatat       720
     tcgagacaaa tgtttgaaaa attgaatttg ttctttaaca tcagtttgag cattattcct       780
     gtttctgcac ttaaaactat tcatgtattt gagaaagaac taagtgcttt agatgctgac       840
     aaatcacttt tagaacaaac gtggagcgga gtctcctcat ttattgaaac ctggaaagta       900
     aaaactaaag ttaaagatga agatcaagat gagtacgaac tagctggact gtctgcactt       960
     agaaaaggag tcgatggtaa ttctgtatct agcccttaca atgataagaa attcatcgac      1020
     tggtattcta agacgtttgc taaaatagag aaaggttcat cgttgcgtaa gactgaaatt      1080
     gaagacaaaa atacgtccgg tacttcaaac ataacaaagc aagttaaaat tcattttcct      1140
     gttcagtatt tcgatgaagt caaatctaac ggtcatgaaa aaagtgttac tgtaatcact      1200
     aataaaggtg aaatgtcatt ggaatcttac cgaaagatag gtgaaatatt aagtgcgatc      1260
     tggaaacgtg gtaaggcatt agctgctccc tgcatcgatt acgtcaaact tggtgtcgaa      1320
     aaagcttatc acttagctcc tgtaatcatg aagaaatata atttaactat tgatgatata      1380
     attcatttta ttgaaattgg tccttcatac ttagcgaaat tggataaaat tgatgattgg      1440
     tccttaattg caaaattgat tattaccagt gttttgccaa acatcattca agcggtgtat      1500
     aaaacagatc ctagcaataa tgttatgaat tcagtcatta ttagcagagc taacaattta      1560
     ttgaaggcgg atcgcgatcg tttaattaag aaagctacca ctgcaaattc atctaccagt      1620
     aattcaaatt cagaacatgg tcaaaagatt gtgttaaata aagtcaccag atga            1674
//