ID HQ162270; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC HQ162270; XX DT 03-FEB-2011 (Rel. 107, Created) DT 03-FEB-2011 (Rel. 107, Last updated, Version 1) XX DE Tomato leaf curl Hanoi virus isolate Vietnam/Hanoi/tomato/2010, complete DE genome. XX KW . XX OS Tomato leaf curl Hanoi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Ha C.V., Le H.V., Tran T.N.; RT "Identification of begomoviruses in Vietnam"; RL Unpublished. XX RN [2] RP 1-2740 RA Ha C.V., Le H.V., Tran T.N.; RT ; RL Submitted (19-AUG-2010) to the INSDC. RL Research Centre for Tropical Plant Diseases, Hanoi University of RL Agriculture, Trauqui - Gialam, Hanoi, Vietnam XX DR MD5; 5d80cd0b85e1e221be66b54be47e2233. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl Hanoi virus" FT /host="tomato" FT /isolate="Vietnam/Hanoi/tomato/2010" FT /mol_type="genomic DNA" FT /country="Viet Nam" FT /collection_date="2010" FT /note="sample 100" FT /db_xref="taxon:971271" FT gene 128..478 FT /gene="AV2" FT CDS 128..478 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:E9LZP8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E9LZP8" FT /protein_id="ADW24236.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGHDLIRDL FT ILVIRARDYVEATRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHV FT PKAQDVPNVQKP" FT gene 288..1061 FT /gene="AV1" FT CDS 288..1061 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:E9LZP9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E9LZP9" FT /protein_id="ADW24235.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSW FT VNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE FT PSTATVKNDNRDRFQVLRRIQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1058..1462) FT /gene="AC3" FT CDS complement(1058..1462) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:E9LZQ0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E9LZQ0" FT /protein_id="ADW24239.1" FT /translation="MDSRTGEAITAAQAESGVYIWTVKNPLYFKITSHDERPFLTNHDI FT ITIQVQFNYNLRKALGIHQCFLICRVWTRLHPQTSRFLRVFKYQCIKYLDNLGVISINN FT VIRAMSHVLYNVLEGTIDTEDSSIIKFNLY" FT gene complement(1203..1607) FT /gene="AC2" FT CDS complement(1203..1607) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:E9LZQ1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E9LZQ1" FT /protein_id="ADW24238.1" FT /translation="MRSSSPSKAHSTPVPIKVQHRNAKKATRRRRVDLPCGCSYFIALG FT CHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQP FT EESIGDTPMFSNLPSLDSFTSSDLAFLKSI" FT gene complement(1510..2595) FT /gene="AC1" FT CDS complement(1510..2595) FT /codon_start=1 FT /gene="AC1" FT /product="Rep protein" FT /db_xref="GOA:E9LZQ2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E9LZQ2" FT /protein_id="ADW24237.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKFQCRNQRFFDLISQTRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPIEEYISPFSSSSFDQVPEELDEWAIENVVSAAARPLRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWAIKNAIFVTLQGTL FT YSGSYQGATPQRQESYEETES" FT gene complement(2145..2438) FT /gene="AC4" FT CDS complement(2145..2438) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E9LZQ3" FT /protein_id="ADW24240.1" FT /translation="MGLLTCMSSSNSKESSNAEIKDSSTSYPKQGQHISIRTFRELKAQ FT QMLKHTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKHRPSIY" XX SQ Sequence 2740 BP; 731 A; 546 C; 608 G; 855 T; 0 other; accggatggc cgcgattttt tttaaagtgg tccccgcatg cgctcctgcc caatcctatc 60 cactcctcaa agctaaatta ttaatttgtc tcctatataa cttggtcccc aagtagtcac 120 gtcaaacatg tgggatcctt tactaaacga gtttcccgaa acggtacatg gtttcaggtg 180 tatgctagca attaagtatt tgcaattggt agaaaatacg tactctccag atacattagg 240 gcacgattta attcgcgatt taattttagt tattcgtgct agagattatg tcgaagcgac 300 ccgccgatat agtcatttcc actcccgcat ccaaggtgcg tcgccggctg aatttcgaca 360 gcccgtatgt cagccgtgct gctgccccca ctgtcctcgt cacaaacaaa aggaggtcat 420 gggtgaatcg gcccatgtac cgaaagccca ggatgtaccg aatgtacaaa agccctgatg 480 ttcctcgtgg ttgtgaggga ccatgtaagg tccagtcgta tgaacagcgt catgatgtag 540 ctcacgtagg taaggtcatt tgtgtgtcgg atgttactcg tggtaatggt ttgacgcatc 600 gagtcggtaa gaggttttgt gttaaatctg tctatgtttt gggtaagata tggatggatg 660 agaacattaa gaccaagaat cataccaata cagttatgtt ttttctagtt cgtgatagga 720 gaccttttgg cactccccag gattttggcc aggtgtttaa catgtatgat aatgagccga 780 gtacagctac tgtgaagaat gacaacaggg atcgttttca agttctccgc cgtattcaag 840 ccactgttac tggtggccag tatgcaagta aggagcaagc aatagtcagg aaattcatga 900 aggtgaataa ccatgtaact tataaccatc aagaggctgc gaagtatgat aaccacacag 960 aaaatgcttt gttattgtat atggcatgta ctcatgctag taatccagtg tatgctactt 1020 tgaagatcag gatctatttc tacgattctg ttcagaatta ataaagatta aattttatta 1080 tacttgaatc ttctgtatca attgtgcctt ctaatacatt gtacaataca tgagacattg 1140 ctctaattac attattgatg ctaataactc ctaaattgtc taaatactta atacattgat 1200 atttaaatac tcttaagaaa cgcgaggtct gaggatgtaa acgagtccaa actcggcaga 1260 ttagaaaaca ttggtgtatc cccaatgctt tcctcaggtt gtaattgaat tggacttgta 1320 ttgtgatgat gtcgtggttc gtcagaaatg gtctctcgtc gtggctggtt atcttgaaat 1380 ataggggatt tttgaccgtc cagatatata cgccactctc tgcttgagct gcagtgatag 1440 cttcccctgt gcgagaatcc atgattgtga cagcctagtg caatgaagta tgaacatcca 1500 caagggagat caactctccg tctcctcgta gctttcttgg cgttgcggtg ttgcaccttg 1560 ataggaaccg gagtagagtg tgccttggag ggtgacgaag atcgcattct ttattgccca 1620 gtttttaagt gcgctgtttt tttcttcgtc caagaattct ttatagctgg aattggggcc 1680 aggattgcag aggaagatag tgggaatacc gcctttaatt tgaacaggtt tcccgtactt 1740 cgtgttgctt tgccagtccc tttgggcccc catgaattct ttaaagtgct ttaggtaatg 1800 cggatccacg tcatcgatga cgttgaacca ggcatcatta ctgtacacct ttggactcaa 1860 atctaaatga ccacataaat aattgtgtgg acccaatgat cgggcccaca tcgtcttccc 1920 cgtcctgcta tcaccctcta tgactatact tactggtctc aaaggccgcg cagcggcact 1980 gacaacgttt tctatagccc attcatcaag ttcttcagga acctggtcaa aagaagaaga 2040 agaaaatgga gaaatatatt cctctattgg aggagtaaaa atcctatcta aattactatt 2100 taaattatgg aattgtaaaa caaaatcttt aggagctttc tcccttaata tattgagggc 2160 cgatgctttg gaccctgaat tgattgcctc ggcatatgcg tcgttggcag attggcaacc 2220 tcctctagcc gatcttccat cgatctggaa aactccatga tcaagcacgt ctccgtcttt 2280 ttccatgtat gttttaacat ctgttgagct tttagctccc tgaatgttcg gatggaaatg 2340 tgctgacctt gtttgggata tgaggtcgaa gaatctttga tttctgcatt ggaactttcc 2400 ttcgaattgg atgaggacat gcaagtgagg agacccatct tcgtgtaatt ccctgcagat 2460 tcgaatgaat aatttatttg ttggggtttc taaggcttta atttgggaaa gtgcttcttc 2520 tttggtgaga gaacagtgtg ggtatgtgag gaaatagttt ttggcattta ttctgaattt 2580 attgggagga gccattgact ggtcaatcgg tgtctctcaa acttggctat gcaattggtg 2640 tctggggtct tatttatatg tggacaccaa atggcattaa tgtaattatg attatgaaat 2700 tcaaaattca aattccaaaa gcggccatcc gtataatatt 2740 //