ID HQ162268; SV 1; circular; genomic DNA; STD; VRL; 2748 BP. XX AC HQ162268; XX DT 03-FEB-2011 (Rel. 107, Created) DT 03-FEB-2011 (Rel. 107, Last updated, Version 1) XX DE Tomato leaf curl Hainan virus isolate Vietnam/Hungyen/papaya/2010, complete DE genome. XX KW . XX OS Tomato leaf curl Hainan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2748 RA Ha C.V., Le H.V., Tran T.N.; RT "Identification of begomoviruses in Vietnam"; RL Unpublished. XX RN [2] RP 1-2748 RA Ha C.V., Le H.V., Tran T.N.; RT ; RL Submitted (19-AUG-2010) to the INSDC. RL Research Centre for Tropical Plant Diseases, Hanoi University of RL Agriculture, Trauqui - Gialam, Hanoi, Vietnam XX DR MD5; 57752a940ed0527928ca9845660007c1. XX FH Key Location/Qualifiers FH FT source 1..2748 FT /organism="Tomato leaf curl Hainan virus" FT /host="papaya" FT /isolate="Vietnam/Hungyen/papaya/2010" FT /mol_type="genomic DNA" FT /country="Viet Nam:Hung Yen province" FT /collection_date="2010" FT /note="sample 31" FT /db_xref="taxon:664980" FT gene 132..482 FT /gene="AV2" FT CDS 132..482 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:E9LZN6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E9LZN6" FT /protein_id="ADW24224.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLLRDL FT ISVIRAKDYAEASRRYSHSHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHV FT PKAQDVQNVQKP" FT gene 292..1065 FT /gene="AV1" FT CDS 292..1065 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:E9LZN7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E9LZN7" FT /protein_id="ADW24223.1" FT /translation="MPKRPADIVIPTPASKVPRRLNFDSPYASRAAAPTVLVTNKRRSW FT VNRPMYRKPRMYRTYKSPDVPRGCEGPCKVQSYEQRHDVEHVGKVICVSDVTRGNGLTH FT RVGKRFCVKSVYVLGKIWMDEKIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE FT PSTATVKNDNRDRFQVLRRFQATATGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1062..1466) FT /gene="AC3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:E9LZN8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E9LZN8" FT /protein_id="ADW24227.1" FT /translation="MDSRTGEAITATQAESGVYIWTVKNPLYFKITNHDERPFLMNHDI FT ITIQVQFNYNLRKALGIHQCFLIFQIWTRLRPQTWRFLRVFRVQCMKYLDNLGVISIYN FT VIRACDHVLWDVLEKTEYVTHSNIIKFNLY" FT gene complement(1207..1611) FT /gene="AC2" FT CDS complement(1207..1611) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:E9LZN9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E9LZN9" FT /protein_id="ADW24226.1" FT /translation="MRSSSPSKSHSTQVPIKVQHRNAEKATRRRRVDLPCGCSYFIALG FT CHNYGFSHRGSYHCNSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQP FT EESVGNTPMFSNLPDLDSFTSSDLAFLKSI" FT gene complement(1514..2599) FT /gene="AC1" FT CDS complement(1514..2599) FT /codon_start=1 FT /gene="AC1" FT /product="Rep protein" FT /db_xref="GOA:E9LZP0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E9LZP0" FT /protein_id="ADW24225.1" FT /translation="MPPPKKFLINAKNYFLTYPHCSLSKEEALSQLLALTTPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYM FT DKDGGVIDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLEEEKNSALKNWAIKNAIFVTLQVAL FT YSGSYQGATPQRRESNEETES" FT gene complement(2149..2442) FT /gene="AC4" FT CDS complement(2149..2442) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E9LZP1" FT /protein_id="ADW24228.1" FT /translation="MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQ FT QMSKPIWTKTEALLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2748 BP; 744 A; 557 C; 605 G; 842 T; 0 other; accggatggc cgcgattttt tttacatggt ccccaccact aataaatgtt ctccacttag 60 atcgctccct caaagcctat ttaattcaaa tccattatat atacttggtc cccaagtact 120 cactttaaaa tatgtgggat cctttactga atgagtttcc cgaaaccgta cacggtttta 180 ggtgtatgtt agcgattaaa tatttgcaat tagtagaaaa tacatactct cctgatacat 240 tagggtacga tttgcttcgt gatttaattt cagttattcg tgctaaggac tatgccgaag 300 cgtcccgcag atatagtcat tcccactccc gcatccaagg tgcctcgccg gctgaatttc 360 gacagcccgt atgccagccg tgctgctgcc cccactgtcc tcgtcacaaa caaaaggagg 420 tcatgggtga atcggcccat gtaccgaaag cccaggatgt acagaacgta caaaagccct 480 gatgttcctc gaggatgtga aggcccatgt aaggttcagt cctatgaaca gcgtcatgat 540 gtagagcacg taggtaaagt catttgtgtg tcggatgtta ctcgtggtaa cgggttgact 600 catcgagtgg gaaagaggtt ttgtgttaag tctgtttatg ttttgggcaa gatatggatg 660 gatgagaaaa ttaagaccaa gaatcacact aatactgtaa tgtttttttt agttcgtgat 720 aggagaccat ttgggactcc acaggatttt ggtcaggtgt ttaacatgta tgataacgag 780 ccaagtacag ccactgtgaa gaacgacaac agagatcgct ttcaagttct acggcgtttt 840 caggcgactg ctactggtgg tcagtatgca agtaaggagc aagcaatagt taggaagttt 900 atgaaggtga acaaccatgt gacgtataat catcaagaag ctgcgaagta tgacaatcac 960 acagagaatg ctcttttgtt gtatatggca tgtactcatg ctagtaatcc tgtgtatgct 1020 actttgaaaa tcagaatcta tttctatgat tctgttcaga attaataaag attgaatttt 1080 attatatttg aatgtgttac atattctgtt ttttccaata catcccataa tacatgatca 1140 catgctctaa ttacattgta aatactaatt acacccaaat tatctaaata tttcatacat 1200 tgaaccctaa atactcttaa gaaacgccaa gtctgaggac gtaaacgagt ccagatctgg 1260 aagattagaa aacattggtg tattcccaac gctttcctca ggttgtaatt gaattggact 1320 tgtattgtga tgatgtcgtg gttcatcaga aatggtctct cgtcgtggtt ggttatcttg 1380 aaatataggg gatttttgac cgtccagata tatacgccac tctctgcttg agttgcagtg 1440 atagcttccc ctgtgcgaga atccataatt gtgacagcct agtgcaatga agtatgaaca 1500 gccacaaggg agatcaactc tccgtctcct cgttgctttc tcggcgttgc ggtgttgcac 1560 cttgatagga acctgagtag agtgcgactt ggagggtgac gaagatcgca ttttttattg 1620 cccagttttt aagcgcgctg ttcttctctt cctccaagaa ttctttatag cttgaattgg 1680 ggccgggatt gcagaggaag atagtgggaa ttcccccttt aatttgaacg ggttttccgt 1740 actttgtgtt gctttgccag tccctttggg cccccatgaa ttctttaaaa tgctttaggt 1800 agtgcggatc aacgtcatca atgacgttgt accaggcatc attactatac acttttggac 1860 tcaaatcaag atgaccacac aggtaattat gtggtcctaa tgacctagcc cacatcgtct 1920 tacccgtcct gctatcaccc tctatgacta tacttaccgg tcgtaatggc cgcgcagcgg 1980 cactgacaac gttctctgca gcccactctt cgagttcctc tgggactcga tcaaacgaag 2040 aagaagaaaa aggggaaacg taaacctcca ttggaggagt aaagatccta tctaaattac 2100 tatttaaatt atgaaactgt aaaacaaaat ctttgggagc tttctccctt aatatattga 2160 gggccgtagc tttggaccct gaattgattg cctcggcata tgcgtcgttt gcagactggc 2220 aacctcctct agccgatctt ccatcgatct ggaaaactcc atgatcaata acgcctccgt 2280 ctttgtccat ataggctttg acatctgttg agcttttagc gctctgaatg ttcggatgga 2340 aatgtgctga cctggttggg gatacgagat cgaagaatct gttgttttgg catttgaatt 2400 ttccttcgaa ctggatgagg acatgcaggt gaggagaccc atcttcgtgt aattccctgc 2460 agattcgaat gaataattta tttgttggtg tcgttagagc taacaattgg gaaagtgcct 2520 cttctttgct tagtgagcaa tgtgggtatg tgaggaaata gtttttggca tttattagaa 2580 attttttggg cggaggcatg ttgacttggt caatcgggtc ctctcaaact tagctatgca 2640 atcggggaat gggtccttat ttatatgtga ggacctaaat ggcacaattg taaataatca 2700 tattaaatcc aaaattcaaa ttggtaaagc ggccatccgt ataatatt 2748 //