ID HQ141673; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC HQ141673; XX DT 13-JAN-2011 (Rel. 107, Created) DT 13-JAN-2011 (Rel. 107, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus-JID27 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus-JID27 OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Haq Q.M.I., Jyothsna P., Malathi V.G.; RT "Complete nucleotide sequence of Tomato leaf curl New Delhi virus"; RL Unpublished. XX RN [2] RP 1-2739 RA Haq Q.M.I., Jyothsna P., Malathi V.G.; RT ; RL Submitted (13-AUG-2010) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Campus, New Delhi, Delhi 110012, India XX DR MD5; fd99f901482aaa717c121d01f2e4fdae. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus-JID27" FT /segment="DNA-A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="India:Pune" FT /collection_date="27-Apr-2008" FT /clone="JID27" FT /db_xref="taxon:935471" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7D6U4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7D6U4" FT /protein_id="ADT70812.1" FT /translation="MWDPLLHESPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLIRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7D6U5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E7D6U5" FT /protein_id="ADT70813.1" FT /translation="MVKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHVTVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="unknown" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:E7D6U6" FT /protein_id="ADT70818.1" FT /translation="MHVLHRCCARFIVKHIKHFPEILGRSCRTTVTNQKKHDTVSMVFC FT LDVFIHPYLSQHIDGFHTKSLPYAMCEASSSCNITNTHDFANMRDIVPGFKGLHFTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYLRCGR" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7D6U7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7D6U7" FT /protein_id="ADT70816.1" FT /translation="MITDSRTGEYITADRTESGVYTWEIKNPLYFKILKHDSRPFLTQH FT DIITIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVLRAVYHVLDNVIERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7D6U8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7D6U8" FT /protein_id="ADT70815.1" FT /translation="MQSSSHSKNHSIPVAKTTLPQKKKKIIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGVHHCGSYREWRIYLGNQKSPVFQNFETRQQALPNTARHNHDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiation protein" FT /db_xref="GOA:E7D6U9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7D6U9" FT /protein_id="ADT70814.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNVQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLNNNLDRIFQPPSEVYVSPFTISSFDRVPADLVDWVTSNVVCAAARPFRPISIVIEGN FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENNAPAEEEEDHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="PTGS suppressor" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7D6V0" FT /protein_id="ADT70817.1" FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQAGQHISIRTFRELNQR FT RTSKNTSTKMETF" XX SQ Sequence 2739 BP; 748 A; 580 C; 607 G; 804 T; 0 other; accgaatggc cgcgcaaatt ttttggtggg ccctcaacca atgaaattca cgctacatgg 60 cttatttagt gcgtggggat caataaatag acttgctcac caagtttgaa tccacaaaca 120 tgtgggatcc attattgcat gaatctccag aaagcgttca tggtctaagg tgcatgttag 180 ctgtaaaata tctccaagag atagaaaaga actattcacc agacacagtc ggctacgatc 240 ttatccgaga tctcattctt gttctccgag caaagaacta tggtgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaagt gcagtccttt gaatccaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacacga ggaactggcc tcacacatcg cgtagggaag 600 cgattttgtg tgaaatccgt ctatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 tctccccagg atttcgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgt gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagca agtttgttag ggttaataat 900 tatgtagttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgcac tcatgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcaa gctttatatc atatgaagtc 1080 catacatcaa tcgttcgctc tattacatta tccaatacat gataaaccgc tcttaaaaca 1140 ttataaattc ctattacacc taacatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat cgtgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 ttgatttccc aggtatatac gccactctct gtacgatccg cagtgatgta ctcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatatagtac gaacaaccac acggtagatc 1500 aactcgcctc ctgcgaatga tcttcttctt cttctgcggg agcgttgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct atttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttt gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcgacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggcttaga tcaagatgtc 1860 cgcacaagta attgtgtgga cctaagcaac gagcccacat tgttttgcca gttctactat 1920 tcccctctat gactatgctt atgggcctga aaggccgcgc agcggcacac acaacatttg 1980 acgtaaccca atcgacgagg tctgccggaa ctctgtcgaa ggatgaaatt gtaaatggag 2040 aaacataaac ctcggacgga ggttgaaaaa tgcgatctaa attgttattt aaattgtgaa 2100 attgcagaac gtaatccttt ggggctaatt cctttaatac tttcaaagca tcatctttat 2160 ttcccgtgtt aatcgcctgg gcatatgcat cgttcgccgt ttgttgacca ccacgggcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccatctttg tcgatgtatt 2280 ttttgacgtc cgacgctgat ttagctccct gaacgttcgg atggaaatgt gctgaccggc 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatctt cgtgaagctc tctacagatc ttgatgaatt 2460 tcttcttcgt cggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttac tctaaaacga cgtggcgaag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaactta tctatgtgat tggtgtctgg 2640 agtcctatat ataggtaaga caccatatgg cattattgta attttgaaaa gaaaattact 2700 ttaattcaaa ttccctaaag cggccattcg tataatatt 2739 //