Dbfetch
ID HQ130329; SV 1; linear; genomic RNA; STD; VRL; 4711 BP. XX AC HQ130329; XX DT 24-NOV-2010 (Rel. 106, Created) DT 24-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 3 isolate 9-33 coat protein, divergent DE coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa DE protein, and 7 kDa protein genes, complete cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-4711 RX DOI; 10.1094/PHYTO-07-10-0173. RX PUBMED; 21391825. RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT "Genetic diversity in the 3' terminal 4.7-kb region of grapevine RT leafroll-associated virus 3"; RL Phytopathology 101(4):445-450(2011). XX RN [2] RP 1-4711 RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT ; RL Submitted (12-AUG-2010) to the INSDC. RL Department of Environmental Science, Policy and Management, University of RL California, Berkeley, Berkeley, CA 94720, USA XX DR MD5; 83fc8a9d8814e52bacba4a27b73abbde. XX FH Key Location/Qualifiers FH FT source 1..4711 FT /organism="Grapevine leafroll-associated virus 3" FT /host="Vitis vinifera cv. Merlot" FT /isolate="9-33" FT /mol_type="genomic RNA" FT /country="USA:California, Napa Valley" FT /collection_date="03-Aug-2009" FT /db_xref="taxon:55951" FT CDS 117..1058 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF6" FT /db_xref="GOA:E5KGM9" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E5KGM9" FT /protein_id="ADQ57786.1" FT /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ FT AELTGIAVVPEKYVFATAALATAAQEPPRQPPAQVVEPQETDIGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADD FT AATKTKFFLHVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYE FT NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAI FT LAWNLARQQAFRNKTVTADNTLHNVFQLLQKK" FT CDS 1121..2554 FT /codon_start=1 FT /product="divergent coat protein" FT /note="CPm; ORF7" FT /db_xref="GOA:E5KHA7" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E5KHA7" FT /protein_id="ADQ57787.1" FT /translation="MGAYTHVDFHESRLLKDKQDYLSFKSANEAPPDPPGYVRPDSYVR FT AYLIQRADFPDTQSLSVTLSIASNKLASGLMGSDAVSSSFMLMNDAGDYFECGVCHNKP FT YLGREVIFCRKYLGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTD FT VSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPL FT KKSFNARIEDVLNIDDASLLVPSPVVPESTGGVGPSEQLDVVALTSDVTELINTRGQGK FT ICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQL FT FVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFT FT HTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAI FT KSANLRRKGSETYNILESI" FT CDS 2565..3122 FT /codon_start=1 FT /product="21 kDa protein" FT /note="p21; ORF8" FT /db_xref="UniProtKB/TrEMBL:E5KGN1" FT /protein_id="ADQ57788.1" FT /translation="MEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNCAVKSFRDT FT DTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEI FT SEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNK FT EKFKGRDILDTYVLSSDYPGFK" FT CDS 3119..3652 FT /codon_start=1 FT /product="19.6 kDa protein" FT /note="p20a; ORF9" FT /db_xref="UniProtKB/TrEMBL:E5KHA9" FT /protein_id="ADQ57789.1" FT /translation="MKLLSLRYLILRLSKSLRTNDHLVLILIKEALINYYNASFTDEGA FT VLRDSRESIENFLVARCGSQNSCRVMKALITNTVCRMSIETARSFIGDLILVADSSVSA FT LEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQG FT GGNVLQHLLISSLG" FT CDS 3659..4198 FT /codon_start=1 FT /product="19.7 kDa protein" FT /note="p20b; ORF10" FT /db_xref="UniProtKB/TrEMBL:E5KHB0" FT /protein_id="ADQ57790.1" FT /translation="MDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAMNDPQ FT AEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKS FT MELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEEADILRTNHLVSGNKFSSN FT FGIARMLLLTLCCGAL" FT CDS 4201..4311 FT /codon_start=1 FT /product="4 kDa protein" FT /note="p4; ORF11" FT /db_xref="GOA:E5KHB1" FT /db_xref="UniProtKB/TrEMBL:E5KHB1" FT /protein_id="ADQ57791.1" FT /translation="MLCCSASVKFSNGLQLSLLICACLLAMLIVSCCRRR" FT CDS 4308..4490 FT /codon_start=1 FT /product="7 kDa protein" FT /note="p7; ORF12" FT /db_xref="GOA:B3FQ76" FT /db_xref="UniProtKB/TrEMBL:B3FQ76" FT /protein_id="ADQ57792.1" FT /translation="MRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYAL FT ISICRKREGLGTINR" XX SQ Sequence 4711 BP; 1425 A; 866 C; 1136 G; 1284 T; 0 other; ggaactactc taccacacca gctttaaagc tgcgtgtagt atgcgacgat gtttctcgta 60 ttagttttat aaaaattttt aattgctttg tgtgtggttt ttgttgagtg aacgcgatgg 120 catttgaact gaaattaggg cagatatatg aagtcgtccc cgaaaataat ttgagagtta 180 gagtagggga tgcggcacaa ggaaaattta gtaaggcgag tttcttaaag tacgttaagg 240 acgggacaca ggcggaatta acgggaatcg ccgtagtgcc cgaaaaatac gtattcgcca 300 cagcagcttt ggctacagcg gcgcaggagc cacctaggca gccaccagcg caagtggtgg 360 aaccacagga aaccgatata ggggtagtgc cggaatctga gactctcaca ccaaataagt 420 tggttttcga gaaagatcca gacaagttct tgaagactat gggcaaggga atagctttgg 480 acttgacggg agttacccac aaaccgaaag ttattaacga gccagggaaa gtatcagtag 540 aggtggcaat gaagattaat gctgcattga tggagctgtg taagaaggtt atgggcgccg 600 atgacgcagc aactaagaca aaattcttct tgcacgtgat gcagattgct tgcacgttct 660 ttacatcgtc ttcgacggag ttcaaagagt ttgactacat agaaaccgat gatggaaaga 720 agatatatgc ggtgtgggta tatgattgca ttaaacaagc tgctgcttcg acgggttatg 780 aaaacccggt aaggcagtat ctagcgtact tcacaccaac cttcatcacg gcgaccctga 840 atggtaaact agtgatgaac gagaaggtta tggcacagca tggagtacca ccgaaattct 900 ttccgtacac gatagactgc gttcgtccga cgtacgatct gttcaacaac gacgcaatac 960 tagcatggaa tttagctaga cagcaggcgt ttagaaacaa gacggtaacg gccgataaca 1020 ccttacacaa cgtcttccaa ctattgcaaa agaagtagct acgatcgatg tctataaatt 1080 ggtgaaaaat ttagaaatat ttacctttta ttgataattc atgggggctt atacacatgt 1140 agactttcat gagtcgcggt tgctgaaaga caaacaagac tatctttctt tcaagtcagc 1200 gaatgaagct cctcctgatc ctcccggata cgttcgccca gatagttatg tgagggctta 1260 tttgatacaa agagcagact ttcccgatac tcaaagctta tcagttacgt tatcgatagc 1320 cagtaataag ttagcttcag gtcttatggg aagcgacgca gtatcatcgt cgtttatgct 1380 gatgaacgac gcgggagatt acttcgagtg cggcgtgtgt cacaacaaac cctacttagg 1440 acgggaagtt atcttctgta ggaaatactt aggtgggaga ggagtggaga tcaccactgg 1500 taagaactac acgtcgaaca attggaacga ggcgtcgtac gtaatacaag tgaacgtagt 1560 cgatgggtta gcacagacca ctgttaattc tacttatacg caaacggacg ttagtggtct 1620 acccaaaaat tggacgcgta tctacaaaat aacaaagata gtgtccgtag atcagaacct 1680 ctaccctggt tgtttctcag actcgaaact gggtgtaatg cgtataaggt cactgttagt 1740 ttccccagtg cgcatcttct ttagggatat cttattgaaa cctttgaaga aatcgttcaa 1800 cgcaagaatc gaggatgtgc tgaatattga cgacgcgtcg ttgttagtac cgagtcctgt 1860 cgtaccagag tctacgggag gtgtaggtcc atcagagcag ctggatgtag tggctttaac 1920 gtccgacgta acggaattga tcaacactag ggggcaaggt aagatatgtt ttccagactc 1980 agtgttatcg atcaatgaag cggatatcta cgatgagcgg tatttgccga taacagaagc 2040 tctacagata aacgcaagac tacgcagact cgttctttcg aaaggcggga gtcaaacacc 2100 acgagatatg gggaatatga tagtggccat gatacaactt ttcgtactct actctaccgt 2160 aaagaatata agcgtcaaag acgggtatag ggtggagacc gaattaggtc aaaagaaagt 2220 ctacttaagt tattcggaag taagggaagc tatattagga gggaaatacg atgcgtctcc 2280 aaccaacact gtgcgatcct tcatgaggta ttttactcac accaccatta ctctacttat 2340 agagaagaaa attcagccag cgtatactgc cctagctaag cacggcgtcc cgaagaggtt 2400 cactccgtac tgcttcgact tcgcactact ggataacaga tattacccgg cggacgtgtt 2460 gaaggctaac gcaatggctt gcgctatagc gattaaatca gctaatttaa ggcgtaaagg 2520 ttcggagacg tataacatct tagaaagcat ttgattatct aaagatggaa ttcagaccag 2580 ttttaattac agttcgccgt gatcccggcg taaacactgg tagtttgaaa gtgatagctt 2640 atgacttaca ctacgacaat atattcgata actgcgcggt aaagtcgttt cgagacaccg 2700 acactggatt cactgttatg aaagaatatt cgacgaattc agcgtttata ctaagtcctt 2760 ataaactgtt ttccgcggtc tttaataagg aaggtgagat gataagtaac gatgtaggat 2820 cgagtttcag ggtttacaat atcttttcgc aaatgtgtaa agatatcaac gagatcagcg 2880 agatacaacg tgccggttac ctagaaacat atttaggaga cgggcaggct gacactgata 2940 tattttttga tgtcttaacc aacaacaaag caaaggtaag gtggttagtt aataaagacc 3000 atagcgcgtg gtgtgggata ttgaatgatt tgaagtggga agagagcaac aaggagaaat 3060 ttaaggggag agacatacta gatacttacg ttttatcgtc tgattatcca gggtttaaat 3120 gaagttgctt tcgctccgct atcttatctt aaggttgtca aagtcgctta gaacgaacga 3180 tcacttggtt ttaatactta taaaggaggc gcttataaac tattacaacg cctctttcac 3240 cgatgagggt gccgtattaa gagactctcg cgaaagcata gagaattttc tcgtagccag 3300 gtgcggttcg caaaattcct gccgagtcat gaaggctttg atcactaaca cagtctgtag 3360 gatgtcgata gaaacagcca gaagttttat cggagactta atactcgtcg ccgactcctc 3420 tgtttcagcg ttggaagaag cgaaatcgat taaagataat ttccgcttaa gaaaaaggag 3480 aggcaagtat tattatagtg gtgattgtgg atccgacgtt gcgaaagtta agtatatttt 3540 gtctggggag aatcgaggat tggggtgcgt agattccttg aagctagttt gcgtaggtag 3600 acaaggaggt ggaaacgtac tacagcactt actaatctca tctctgggtt aaagcatcat 3660 ggacctatcg tttattatag tgcagatcct ttccgccttg tacaataatg acgtgacagc 3720 actttacatt ttgattaacg cgtataatag cgttgatgat acgacgcgct gggcagcgat 3780 gaacgatccg caagctgagg ttaacgtcgt gaaggcttac gtagctacta cagcgacgac 3840 tgagctgcat agaacaattc tcattgacag tatagactcc gccttcgctt atgaccaagt 3900 ggggtgtttg gtgggcatag ctagaggttt gcttaaacat tcggaagatg ttctggaggt 3960 catcaagtcg atggaattat tcgaagtgtg tcgtggaaag aggggaagca aaagatatct 4020 tggatactta agtgatcaat gcactaacaa atacatgatg ctaacccagg ccggactggc 4080 cgcagttgaa gaagcagaca tactacgaac gaatcatcta gtcagtggta ataagttctc 4140 ttcaaatttc gggatcgcta ggatgttgct cttgacgctt tgttgcggag cactataaaa 4200 atgttatgtt gttcagccag tgtcaaattt tcaaacgggt tacaattatc gctacttatt 4260 tgcgcatgtt tgttagcgat gctaattgtt agttgttgta gaaggcgatg aggcacttag 4320 agaaacccat cagagtagcg atacactatt gcgtcgtgcg aagtgacgtt tgtgatgggt 4380 gggatgtatt tataggcgta acgttaatcg gtatgtttat tagttactat ttatatgctc 4440 taattagcat atgtagaaaa agggaaggtc tgggaactat taataggtaa agactcttca 4500 ataaatttca aataaacaaa agtaagaaaa atgaaataat taggctagtc tttttgttcg 4560 tttttcgttt ttgtagaata ggttatattt cgaggtaaga tgactaaact ctacctcacg 4620 gtttaatact ctgatatttg taaaattagt ccgtaaagtc gatagtgata ttatattagt 4680 atagtataat aaacgccaaa atccaattaa a 4711 //