ID HQ130311; SV 1; linear; genomic RNA; STD; VRL; 4711 BP. XX AC HQ130311; XX DT 24-NOV-2010 (Rel. 106, Created) DT 24-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 3 isolate 7-123 coat protein, divergent DE coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, and 7 kDa DE protein genes, complete cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-4711 RX DOI; 10.1094/PHYTO-07-10-0173. RX PUBMED; 21391825. RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT "Genetic diversity in the 3' terminal 4.7-kb region of grapevine RT leafroll-associated virus 3"; RL Phytopathology 101(4):445-450(2011). XX RN [2] RP 1-4711 RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT ; RL Submitted (12-AUG-2010) to the INSDC. RL Department of Environmental Science, Policy and Management, University of RL California, Berkeley, Berkeley, CA 94720, USA XX DR MD5; 410e83b1b64697ff71585aca40d7fbe7. XX FH Key Location/Qualifiers FH FT source 1..4711 FT /organism="Grapevine leafroll-associated virus 3" FT /host="Vitis vinifera cv. Merlot" FT /isolate="7-123" FT /mol_type="genomic RNA" FT /country="USA:California, Napa Valley" FT /collection_date="03-Aug-2009" FT /db_xref="taxon:55951" FT CDS 117..1058 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF6" FT /db_xref="GOA:E5KGX7" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E5KGX7" FT /protein_id="ADQ57662.1" FT /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ FT AELTGIAVVPEKYVFATAALATAAQEPPRQPTAQVVEPPETEVGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADD FT AATKTKFFLYVMQIACTFFTSSSTEFKEFDYIETEDGKKIYAVWVYDCIKQAAASTGYE FT NPVRQYLAYFTPTFITATLNGKLMMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAI FT LAWNLARQQAFRNKTVTADNTLHNVFQLLQKK" FT CDS 1121..2554 FT /codon_start=1 FT /product="divergent coat protein" FT /note="CPm; ORF7" FT /db_xref="GOA:E5KGZ0" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E5KGZ0" FT /protein_id="ADQ57663.1" FT /translation="MGAYTHIDFHESQLLKDKQDYLSFKSAVEAPPDPPGYVRPDSYTR FT AYQIQRADFPRTGDLSITLSIASNKLASGLMGSDAVSSSFMLMNNGGDYFECGVCHNKP FT YLGREVVFCKKYLGGRGVEITAGKNYSSNNWNQSSYVIQVDIVNGLARTTVNSNYTQTD FT VSGLPRDWTRIYKITKIVSVDQNLYPGCFSSSKLNVMLIRSLAVSPVRTFFRNVLLKPL FT KKSFNARIEDVLSIDDASLLVPSPVVPVSTDGAGPSEQLDVVALTSDITELINARGQGK FT ISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQL FT FVLYSTVKNISVKDGYRVETELGGKNVSLSYSEVREAILGGKYDASPTNTIRSFMRYFT FT HTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAI FT KSANLRRKGSETYNILENI" FT CDS 2565..3122 FT /codon_start=1 FT /product="21 kDa protein" FT /note="p21; ORF8" FT /db_xref="UniProtKB/TrEMBL:E5KGX9" FT /protein_id="ADQ57664.1" FT /translation="MEFRPVLITVRRDPGVNAGSLKVIAYDLHYDNIFDNCAVKSFRDA FT DTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMSKDVSEI FT SEIQRAGYLETYLGDGQADTDIFFDVLTNNKARIRWLVNKDHSAWCGLLNDLKWEESNK FT EKFKGRDLLDTYVLSSDYPGFK" FT CDS 3119..3652 FT /codon_start=1 FT /product="19.6 kDa protein" FT /note="p20a; ORF9" FT /db_xref="UniProtKB/TrEMBL:E5KGY0" FT /protein_id="ADQ57665.1" FT /translation="MKLLSLRYLILRLSKSLKTNDHLVLILIKEALINYYNTSFTDEDA FT VLRDSRESIENFLVARCGSQNSCRVMKALITGIVCKMSIETARNFVGDLILVADSSVSA FT LEEAKSIRDNFRLRRRRGKYHYSGVCGSDIAKVRYILSGERRGLKCVDSLELVCIGREG FT SGNVLQHLLISSLG" FT CDS 3659..4198 FT /codon_start=1 FT /product="19.7 kDa protein" FT /note="p20b; ORF10" FT /db_xref="UniProtKB/TrEMBL:E5KGY7" FT /protein_id="ADQ57666.1" FT /translation="MDLSFIIVQILSALYNNDATALYILINAYKSVADTVGETAIGNPQ FT AEVDVVKAYVTTTATTELHRTILIDSIDSAFAYDGIGCLVGIARGLVKHSENVLEIIKS FT MELFEVCRGKRGSRKYLGCLSDYCSSKHMMLTQAGLAAVDEADVLRTNYLVSTNGFVSN FT CGIARMLLLTLCNGAL" FT CDS 4308..4490 FT /codon_start=1 FT /product="7 kDa protein" FT /note="p7; ORF12" FT /db_xref="GOA:E5KGZ4" FT /db_xref="UniProtKB/TrEMBL:E5KGZ4" FT /protein_id="ADQ57667.1" FT /translation="MRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYNLYAL FT ISICRRKEDLITGNG" XX SQ Sequence 4711 BP; 1425 A; 839 C; 1145 G; 1302 T; 0 other; gggactactc taccacacca gctttagcgc cgagtgcggt atgcgacgat gtttctcgta 60 ttagttttat aaatttttta aattactttg cgagtgggtt ttgttgattt gacgtgatgg 120 catttgaact gaaattaggg cagatatatg aagttgtccc cgaaaataat ttgagggtta 180 gagtggggga tgcggcacaa ggaaagttta gtaaggcgag tttcttaaaa tacgttaagg 240 atgggacgca ggcggagtta acgggaattg ctgtggtgcc ggaaaagtac gtgtttgcca 300 cggcagcttt agctacagca gcacaggagc cacctaggca gccaacagcg caagtggtgg 360 aaccacctga aaccgaagta ggggtggtac cggaatcgga gactcttaca ccaaataagt 420 tggttttcga gaaagatcca gacaagttct tgaagaccat gggcaaggga atagctttgg 480 acttaacggg agttacccat aaaccgaaag ttattaacga gccagggaaa gtatcagtag 540 aggtggcgat gaagattaat gcggcattga tggagctgtg taagaaggtt atgggcgccg 600 atgacgcagc aactaagacg aaattcttct tgtacgtgat gcagatcgct tgcacgttct 660 tcacatcgtc ttcgacagag ttcaaagagt tcgactacat tgagaccgaa gatggaaaga 720 agatatacgc ggtatgggtg tacgattgca ttaaacaagc tgcggcttcg acgggctatg 780 aaaaccctgt aaggcagtat ctagcttact ttacaccaac ctttatcacg gcgaccttga 840 atggtaagct gatgatgaat gaaaaggtta tggcacagca cggagtacca ccgaaattct 900 ttccgtacac gatagattgc gttcgtccga cgtatgatct gttcaataac gacgcaatat 960 tagcgtggaa tttagctaga caacaggcgt ttagaaataa gacagtgacg gctgacaaca 1020 ccttacacaa cgtcttccaa ctattgcaaa agaaatagtt acgatcgatg tctataaatc 1080 ggtaaaagat tttaaagtat ttacctttta ttgataattc atgggggctt acacacacat 1140 agactttcat gaatcacaat tgctgaaaga caaacaagat tatctttctt ttaagtcagc 1200 ggttgaagct cctcctgatc ctcccgggta cgttcgccca gatagttaca cgagggctta 1260 tcagatacaa agagcagact ttcctcgaac tggagattta tcgattacgt tatcgatagc 1320 cagtaataag ttggcttcgg gtcttatggg aagtgacgca gtatcgtcgt cgtttatgct 1380 aatgaacaac gggggagatt acttcgagtg cggcgtgtgt cacaacaaac cgtatttagg 1440 acgagaagta gtcttctgta agaaatactt aggtgggagg ggagtggaga tcaccgctgg 1500 taagaattac tcgtcgaata attggaacca gtcgtcgtac gtaatacagg tggatatagt 1560 aaatgggtta gcacggacca ctgttaattc caactatacg caaacggacg ttagtggcct 1620 accccgagac tggacacgta tctacaagat aacaaagata gtatctgtag atcaaaacct 1680 ctaccctggt tgtttctcaa gctcgaaact gaacgtaatg cttataaggt cactggcggt 1740 ttccccagta cgtaccttct ttaggaatgt cttattaaaa cctttgaaga aatcgttcaa 1800 cgcaagaatc gaggatgtgc taagtatcga cgatgcgtca ttattagtac caagtccagt 1860 cgtaccagtg tctacggatg gtgcaggtcc ttcggagcaa ctagatgtag tagctttgac 1920 gtctgacata acagaattga tcaacgctag ggggcaaggt aagataagtt ttccagactc 1980 agtgttgtca atcaatgaag cagatatcta cgacgagcgg tacttaccga ttacggaagc 2040 tctacaaata aatgcgaggc tgcgcagact cgttctttcg aaaggcggga gtcaaacgcc 2100 acgagatatg gggaatatga tagtggctat gattcaactc ttcgtactct actctacagt 2160 aaagaacata agcgttaaag atgggtacag ggtggagacc gagttaggtg gaaagaacgt 2220 tagcttaagt tactcggaag taagggaagc tatactagga gggaaatacg acgcgtctcc 2280 aaccaatact atacgttcct ttatgaggta ttttactcat accactatca cgctacttat 2340 agagaagaag atacagccag cgtacactgc cttagctaag cacggcgtcc cgaagaggtt 2400 cactccgtac tgcttcgatt tcgcactgct ggataacaga tattacccgg cagacgtgct 2460 gaaggctaac gcaatggctt gcgctatagc gattaaatcg gctaatttga ggcgtaaagg 2520 ttcggagacg tataacatct tagaaaatat ctaataatct agagatggag ttcagaccag 2580 ttttaatcac agttcgtcgt gatcccggtg taaatgctgg tagtttaaaa gtgatagctt 2640 atgacttaca ctatgacaac atattcgata attgtgcggt aaagtcgttt cgagacgctg 2700 acactggatt cactgtcatg aaagaatatt cgacgaattc agcgtttata ctaagtcctt 2760 ataaattgtt ttccgcagtt tttaataagg aaggtgagat gataagcaac gatgtaggat 2820 cgagtttcag ggtctacaac atcttttcgc agatgagtaa ggatgtcagc gagattagcg 2880 agatacaacg tgctggttat ctagaaacgt acttaggaga cgggcaggcc gacacggata 2940 tatttttcga tgtcttaact aacaacaagg cgaggataag gtggttagtt aataaagacc 3000 atagcgcgtg gtgcgggtta ttgaatgatt tgaagtggga agaaagtaac aaggagaaat 3060 ttaaggggag agacttacta gatacttacg ttctatcatc tgactatccg ggatttaaat 3120 gaagttgctt tcactccgct atcttatctt gcgtttatca aagtcgctta aaacgaacga 3180 tcacttggtt ttgatactca taaaggaggc gcttataaat tattataaca cctctttcac 3240 tgatgaggat gccgtactaa gagactctcg cgaaagtata gagaattttc tcgtagctag 3300 gtgtggttca caaaattcct gccgtgtcat gaaggctttg atcactggta tagtttgtaa 3360 gatgtcgata gaaacagcta gaaactttgt cggagacttg atactcgtcg ccgactcctc 3420 tgtttcagcg ttagaagaag cgaaatcaat tagagataac ttccgcttga gaagaaggag 3480 aggcaagtat cattatagtg gtgtttgtgg atccgacatt gcgaaagtta ggtatatttt 3540 atcaggggag agacgagggt taaagtgtgt agactcctta gagctggttt gtataggtag 3600 agaaggaagt ggaaacgtac tacagcactt actaatctca tctctaggtt aaagtataat 3660 ggacctatca tttattatcg tgcaaatcct ttctgcctta tacaataatg acgcaacagc 3720 gctgtatatc ctgattaacg cgtataaaag tgttgctgat acagtaggcg agacagcgat 3780 aggcaatcca caagctgagg ttgatgttgt gaaggcttac gtaactacta ctgcgacgac 3840 tgagctgcat aggacgattc ttattgacag tatagactcc gccttcgctt atgacggaat 3900 agggtgttta gtgggcatag ctaggggttt agttaaacat tcagaaaatg ttctggaaat 3960 cataaagtca atggagttat tcgaagtgtg tcgtggaaag aggggaagca gaaaatatct 4020 tgggtgttta agcgattact gctctagtaa acacatgatg ctaactcaag ccggattagc 4080 tgcggttgat gaagcagatg tactacgaac gaattatcta gttagtacta atggatttgt 4140 ttcaaattgc ggaatcgcta ggatgttgct gttgacactt tgtaacggag cactgtgaaa 4200 acgttgtgtt gttcaaccag tctcaaatat tcgaacgcgt tacagttagc actacttgtt 4260 tgtgcgtgtt tgctagcggt gataatcact cttcgttgta gaaagcgatg aggcacttag 4320 aaaaacccat cagagtagca atacattatt gcgtagtgcg aagcgatgtt tgcgacgggt 4380 gggatgtatt tataggcgta acgttaatcg gtatgtttat ttcttacaat ttatacgctc 4440 taattagtat atgtagaaga aaggaagatc tgataaccgg gaatgggtaa agattcttca 4500 ataaaataaa attaaggaaa agtatgaaag atgaaataac taggctagtc tttttgttcg 4560 tttttcgttt ttgtagaata ggttatattt cgaggtaaga tgactaaact ctacctcacg 4620 gtttaatact ctgatatttg taaaattagt ccgtaaagtc gatagtgata ttatattagt 4680 atagtataat aaacgccaaa atccaactaa a 4711 //