ID HQ130298; SV 1; linear; genomic RNA; STD; VRL; 4711 BP. XX AC HQ130298; XX DT 24-NOV-2010 (Rel. 106, Created) DT 24-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 3 isolate 6-12 coat protein, divergent DE coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa DE protein, and 7 kDa protein genes, complete cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-4711 RX DOI; 10.1094/PHYTO-07-10-0173. RX PUBMED; 21391825. RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT "Genetic diversity in the 3' terminal 4.7-kb region of grapevine RT leafroll-associated virus 3"; RL Phytopathology 101(4):445-450(2011). XX RN [2] RP 1-4711 RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT ; RL Submitted (12-AUG-2010) to the INSDC. RL Department of Environmental Science, Policy and Management, University of RL California, Berkeley, Berkeley, CA 94720, USA XX DR MD5; 9e748056c7c9eb83ce4d396db9d008bd. XX FH Key Location/Qualifiers FH FT source 1..4711 FT /organism="Grapevine leafroll-associated virus 3" FT /host="Vitis vinifera cv. Merlot" FT /isolate="6-12" FT /mol_type="genomic RNA" FT /country="USA:California, Napa Valley" FT /collection_date="08-Jul-2009" FT /db_xref="taxon:55951" FT CDS 117..1058 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF6" FT /db_xref="GOA:E5KGQ0" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E5KGQ0" FT /protein_id="ADQ57573.1" FT /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ FT AELTGIVVVPEKYVFATAALATAAQEPPKLPQAQVAEPPEAEIGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADD FT AATKTKFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYE FT NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAI FT LAWNLARQQAFRNKTVTADNTLHNVFQLLQKN" FT CDS 1121..2554 FT /codon_start=1 FT /product="divergent coat protein" FT /note="CPm; ORF7" FT /db_xref="GOA:E5KGQ1" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E5KGQ1" FT /protein_id="ADQ57574.1" FT /translation="MGAYTHIDFHESQLLKDKQDYLSFKSADKAPPDPPGYVRPDNYTR FT AYLIQRADFPRTGDLSVTLSIASNKLASGLMGSDAVSSSFMLMNDGGDYFECGVCHNKP FT YLGREVVFCKKYISGRGVEITSGKNYSSNNWNESSYLIQVDIVNGLARTTVNSNYTQTD FT VSGLPRNWTRIYKITKIVSVDQNLYPGCFSSSKLNVMLIRSLTVSPVRTFFRDVLLKPL FT RKSFNARIEDVLSIDEAALLIPSPVVPVSTDGTGPSEQLDVVALTSDITELINARGQGR FT IGFPDSVLSISEADIYDERYLPITEALQINARLRRLVLSKGGSQTPQDMGNMIVAMIQL FT FVLYSTVKNISVKDSYRVETELGRKNVSLSYSEVREAILGGKYDASPTNTVRSFMRYFT FT HTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAVAI FT KSANLRRKGSETYNILESI" FT CDS 2565..3122 FT /codon_start=1 FT /product="21 kDa protein" FT /note="p21; ORF8" FT /db_xref="UniProtKB/TrEMBL:E2CV55" FT /protein_id="ADQ57575.1" FT /translation="MEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNCAVKSFRDA FT DTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGDMISNDVGSSFRVYNIFSQMSKDISEI FT SEIRRAGYLETYLGDGQADTDLFFDVLTNNKARIRWLVNKDHSAWCGLLNDLKWEESNK FT EKFKGRDLLDTYVLSSDYPGFK" FT CDS 3119..3652 FT /codon_start=1 FT /product="19.6 kDa protein" FT /note="p20a; ORF9" FT /db_xref="UniProtKB/TrEMBL:E5KGQ3" FT /protein_id="ADQ57576.1" FT /translation="MKLLSLRYLILRLSKSLKTNDHLVLILIKEALINYYNTSFTDEGA FT VLKDSRESIENFLIARSSSQNSCSIMKALIANIVCNMSIETARSFVGDLILVADSSVSA FT LEEAKSIRDNFRLRKRRGKYYYSGVCGSDVAKVRYILSGERRGLGCVDSLKLVCVGREG FT GGNALQHLLISSLG" FT CDS 3659..4198 FT /codon_start=1 FT /product="19.7 kDa protein" FT /note="p20b; ORF10" FT /db_xref="UniProtKB/TrEMBL:E5KGQ4" FT /protein_id="ADQ57577.1" FT /translation="MDLSFIIVQILSALYNNDVTALYILINAYKNITDTISEAAIGDPQ FT AEVGVVKAYVTTTATTELHRTILIDSIDSAFAYDGIGCLVGIARGLVKHSENVLEIIKS FT MELFEVCRGKRGSKKYLGYLSDQCSSRHIMLTQAGLAAVDEAEALRTNYLVSSNGFVSN FT CGIARMLLLTLCNGAL" FT CDS 4201..4311 FT /codon_start=1 FT /product="4 kDa protein" FT /note="p4; ORF11" FT /db_xref="GOA:E5KGP1" FT /db_xref="UniProtKB/TrEMBL:E5KGP1" FT /protein_id="ADQ57578.1" FT /translation="MLCCSTSLEHSNALQLALLVCACLLAVTIALCCRRR" FT CDS 4308..4490 FT /codon_start=1 FT /product="7 kDa protein" FT /note="p7; ORF12" FT /db_xref="GOA:E5KGQ6" FT /db_xref="UniProtKB/TrEMBL:E5KGQ6" FT /protein_id="ADQ57579.1" FT /translation="MRHLEKPIRVAIHYCLVRSDVCDGWDVFIGVTLIGMFVTYYLYII FT INMCKRREVLTTGNG" XX SQ Sequence 4711 BP; 1425 A; 837 C; 1154 G; 1295 T; 0 other; gggactactc taccacacca gctttaacgc cgagtgtagt atgcgacgat gtttctcgta 60 ttaggtttat aaatttttaa aattgctttt tgagtgggtt ttgttgagtc gacgtgatgg 120 cattcgaact gaaattaggg cagatatacg aagttgtccc cgaaaataat ttgagggtta 180 gagtagggga tgcagcacaa gggaaattta gtaaggcgag tttcttaaaa tacgttaagg 240 acgggacgca ggcggagtta acgggaatcg tcgtagtgcc ggaaaagtat gtattcgcca 300 cggcagcatt agctacagcg gcacaggagc cacctaagct gccacaagcg caagtggcgg 360 aaccacctga agctgaaata ggggtagtac cggaatcaga gactcttacg ccaaataagt 420 tggttttcga gaaagatcca gacaagttct tgaagaccat gggcaaggga atagctttgg 480 atttaacggg agttacccat aaaccgaaag ttattaacga gccagggaaa gtatcggtag 540 aggtggcaat gaagattaac gccgcattga tggagttgtg taagaaggtt atgggcgctg 600 atgacgcagc aactaagacg aagttcttct tgtacgtgat gcagatcgct tgcacgttct 660 tcacatcgtc ttcgacagag ttcaaagagt tcgactatat agagactgat gatggaaaga 720 agatatacgc ggtatgggtg tatgattgca ttaaacaagc tgcggcttcg acgggctacg 780 aaaacccggt aaggcagtat ctagcttact ttacaccaac ctttatcacg gcgacattga 840 atggtaagct agtgatgaat gaaaaggtta tggcacagca cggagtacca ccgaaattct 900 tcccgtacac gatagattgc gttcgtccga cgtatgatct gttcaataac gacgcaatat 960 tagcgtggaa tttagctaga caacaggcgt ttagaaataa gacggtgacg gctgacaaca 1020 cattacataa tgtctttcaa ctattgcaaa agaactagtt acgatcgaag tccataaatc 1080 ggttaaaatt tttaaagcat ttacctttaa ttgataattc atgggggctt atacacacat 1140 agactttcat gaatcacaat tgctgaaaga caaacaagat tatctttctt tcaagtcggc 1200 ggataaagct cctcctgatc ctcccgggta cgttcgccca gataattaca cgagggctta 1260 tctgatacaa agagcagact ttcctcgaac tggagattta tcggttacgt tatcgatagc 1320 cagtaataag ctagcttcgg gtcttatggg aagtgatgca gtatcatcgt cgtttatgtt 1380 aatgaacgac gggggagatt acttcgagtg tggcgtgtgt cacaacaaac cgtatttagg 1440 gcgagaagta gtcttctgta agaaatacat aagtggtagg ggagtggaga tcacctctgg 1500 taagaattac tcgtcgaaca attggaacga gtcgtcgtac ttaatacagg tggatatagt 1560 aaatgggtta gcacggacta ctgttaattc aaactatacg caaacggacg ttagtggtct 1620 accccggaac tggacgcgta tctataagat aacaaagata gtgtctgtgg atcagaacct 1680 ctaccctggt tgtttctcaa gctcaaaact gaacgtaatg cttataaggt cgctgacggt 1740 ttccccagtg cgcacctttt ttagggacgt cttattgaaa cctttgagga aatcgttcaa 1800 cgcaagaatc gaggatgtgc taagtatcga cgaagcggca ttattaatac caagtccagt 1860 cgtaccagtg tctacggacg gcacaggtcc atcggagcaa ctagatgtag tggctttgac 1920 atctgatata acagaattga tcaacgctag ggggcaaggt aggataggtt ttccggactc 1980 agtgttgtca atcagtgaag cggatatcta cgatgagcgg tacttaccga ttacggaagc 2040 tctacaaata aatgcgaggc tacgcagact cgttctttcg aaaggcggga gtcaaacacc 2100 acaagatatg gggaatatga tagtggctat gattcaactt ttcgtactct actctactgt 2160 gaagaatata agcgttaaag atagttatag ggtggagact gagttaggta gaaagaacgt 2220 tagcctaagt tactcggaag taagggaagc tatattagga gggaaatatg acgcgtctcc 2280 aaccaatact gtgcgatcct ttatgaggta ttttactcat accactatta cgctacttat 2340 agagaagaaa atacagccgg cgtatactgc tttagctaag cacggcgtcc cgaagaggtt 2400 cactccgtac tgcttcgatt tcgcgctgct ggacaacaga tattacccgg cagacgtgct 2460 gaaggctaac gcaatggctt gcgctgtagc gattaaatcg gctaatttga ggcgtaaagg 2520 ttcggagacg tataacatct tagaaagtat ctaataatct agagatggaa ttcagaccag 2580 ttttaatcac agttcgtcgt gatcccggcg taaatactgg tagtttgaaa gtgatagcat 2640 atgacttaca ctatgacaac attttcgata attgcgcggt aaagtcgttt cgagatgctg 2700 acactggatt caccgttatg aaagaatatt cgacgaattc agcgtttata ctaagtcctt 2760 ataaactgtt ttccgcggtt tttaataagg aaggtgatat gataagcaac gatgtaggat 2820 cgagtttcag ggtctacaac atcttttcgc agatgagtaa ggatatcagc gagatcagcg 2880 agatacgacg tgctggttat ctagaaacat acttagggga cgggcaagcc gacacagatt 2940 tatttttcga cgtgttgact aacaacaagg cgaggataag gtggttagtt aataaagacc 3000 atagcgcgtg gtgcgggtta ctgaacgatt tgaagtggga agaaagtaac aaggagaagt 3060 ttaaggggag agacctacta gatacttacg ttctatcgtc cgactatccg gggtttaaat 3120 gaagctactt tcgctccgct atcttatttt gaggttgtca aagtcgctta aaacgaacga 3180 tcacttggtt ttgatactta taaaggaggc gcttataaat tattacaaca cctctttcac 3240 cgatgagggc gccgtactaa aagactctcg cgaaagtata gagaattttc tcatagctag 3300 aagcagttcg caaaattcct gcagtattat gaaggctttg atcgccaata tagtctgtaa 3360 tatgtcgata gaaacagcta gaagcttcgt cggagactta atactcgtcg ccgactcatc 3420 tgtttcagcg ttggaggaag cgaaatcaat tagagataac ttccgcttaa gaaaaaggag 3480 aggcaagtat tattatagtg gtgtttgtgg atccgacgtt gcgaaagtta ggtatatttt 3540 gtcaggggag agacgaggat tagggtgtgt agactccttg aaattagttt gtgtgggtag 3600 agaaggaggt ggaaacgcac tacagcactt actaatctca tctctaggct aaagcgctat 3660 ggacctatca tttattatcg tgcagatcct ttccgcctta tataataatg atgtgacagc 3720 actgtacatc ctgatcaacg cgtataaaaa cattaccgat acaataagcg aagctgcgat 3780 aggtgatccg caagccgagg ttggtgttgt gaaggcttac gtaactacta cagcgacgac 3840 tgagttgcat agaactattc ttattgatag tatagactcc gcctttgctt acgacggaat 3900 agggtgtttg gtgggcatag ctagaggttt agttaaacat tcagaaaatg ttctggaaat 3960 tatcaagtca atggagttat tcgaagtgtg tcgtggaaag aggggaagca aaaaatatct 4020 cgggtattta agcgatcaat gctctagtag acacataatg ctaactcagg ccgggctagc 4080 cgcggttgat gaagcggaag cactacgaac gaattatcta gttagtagta acgggtttgt 4140 ttcaaattgc gggatcgcta ggatgttgct cttgacactt tgtaacggag cactgtgaaa 4200 atgttgtgtt gttcaaccag tctcgaacat tcgaacgcgt tacaattagc actactagtt 4260 tgtgcgtgtt tgttagcggt gacaatcgct ctttgttgta ggagacgatg aggcacttag 4320 aaaaacctat cagggtagcg atacattatt gcttagtgcg aagcgatgtt tgcgacgggt 4380 gggatgtatt tataggcgta acgttaatcg gtatgtttgt tacgtattat ttatatatta 4440 taattaacat gtgtaaaaga agggaagttc tgacaactgg aaacgggtaa agattcttca 4500 ataaaattaa agaaaacaaa agtaagaaag atgaaataat taggctagtc tttttgttcg 4560 tttttcgttt ttgtagaata ggttatattt cgaggtaaga tgactaaact ctacctcacg 4620 gtttaatact ctgatatttg taaaattagt ccgtaaagtc gatagtgata ttatattaat 4680 atagtataat aaacgccaaa atccaattaa a 4711 //