Dbfetch
ID HQ130292; SV 1; linear; genomic RNA; STD; VRL; 4711 BP. XX AC HQ130292; XX DT 24-NOV-2010 (Rel. 106, Created) DT 24-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 3 isolate 3-17 coat protein, divergent DE coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa DE protein, and 7 kDa protein genes, complete cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-4711 RX DOI; 10.1094/PHYTO-07-10-0173. RX PUBMED; 21391825. RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT "Genetic diversity in the 3' terminal 4.7-kb region of grapevine RT leafroll-associated virus 3"; RL Phytopathology 101(4):445-450(2011). XX RN [2] RP 1-4711 RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT ; RL Submitted (12-AUG-2010) to the INSDC. RL Department of Environmental Science, Policy and Management, University of RL California, Berkeley, Berkeley, CA 94720, USA XX DR MD5; 42547594dcd585cda349b312e7ec034c. XX FH Key Location/Qualifiers FH FT source 1..4711 FT /organism="Grapevine leafroll-associated virus 3" FT /host="Vitis vinifera cv. Merlot" FT /isolate="3-17" FT /mol_type="genomic RNA" FT /country="USA:California, Napa Valley" FT /collection_date="16-Jun-2009" FT /db_xref="taxon:55951" FT CDS 117..1058 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF6" FT /db_xref="GOA:E2CV40" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E2CV40" FT /protein_id="ADQ57531.1" FT /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ FT AELTGIAVVPEKYVFATAALATAAQEPPKQPTTQVVEPPEADIGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDD FT TTTKTKFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYE FT NPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAI FT LAWNLARQQAFRNKTVTADNTLHNVFQLLQKK" FT CDS 1121..2554 FT /codon_start=1 FT /product="divergent coat protein" FT /note="CPm; ORF7" FT /db_xref="GOA:E5KGK9" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E5KGK9" FT /protein_id="ADQ57532.1" FT /translation="MGAYTHIDFHESRLLVDKQDYLSFKSAGEAPPDPPGYVRPDSYTR FT AYLIQRADFPRIENLSVTLSIASNKLASGLMGSDAVSSSFMLMNDGGDYFECGVCHNKP FT YLGREVVFCKKYIGGRGVEITTGKNYSSNNWNESSYVLHVNIVGGTAQTSVNSTYTQTD FT VSGLPKNWTRIYKITKIVSVDQNLYPGCFSSSKLNVMLIRSLVVSPVRTFFRDVLLKPL FT RKSFNARVEDVLSIDDATLLAPSPVAPAPTEGVGPSEQLDVVALTSDVTELINTRGQGK FT ISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQL FT FVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFT FT HTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAVAI FT KAANLRRKGSETYNILESI" FT CDS 2565..3122 FT /codon_start=1 FT /product="21 kDa protein" FT /note="p21; ORF8" FT /db_xref="UniProtKB/TrEMBL:B2C4G7" FT /protein_id="ADQ57533.1" FT /translation="MEFRPVLITVRRDPGVNTGSLKVMAYDLHYDNIFDNCVVKSFRDT FT DTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEI FT SEIQRAGYLETYLGDGQADTDIFFDVLTNNKTKIRWLVNKDHSAWCGILNDLKWEESNK FT EKFKGRDILDTYILSSDYPGFK" FT CDS 3119..3652 FT /codon_start=1 FT /product="19.6 kDa protein" FT /note="p20a; ORF9" FT /db_xref="UniProtKB/TrEMBL:E5KGE8" FT /protein_id="ADQ57534.1" FT /translation="MRLLSLRYLILRLSKSLKTNDHLVLILIKEALINYYNASFTDESA FT VLSDSRESIGNFLIARCSSQNSCRVMKALITNIVCKATIETARSFIGDLILVADSSISA FT LEEAKSIRDNFRLRKRRGKYFYSGDCGSDVAKVRYILSGENRGLGYTDSLKLACVGREG FT GGNILQHLLISSLG" FT CDS 3659..4198 FT /codon_start=1 FT /product="19.7 kDa protein" FT /note="p20b; ORF10" FT /db_xref="UniProtKB/TrEMBL:E5KGE9" FT /protein_id="ADQ57535.1" FT /translation="MDLSFIIVQILSALYNNDVTALYILINAYKNVDDTTRWAAMGDPR FT AEVDVVKAYVTTTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKS FT MELFEVCRGKRGSKKYLGYLSDQCSGKHIMLTQTGLTAVEEADILRTNYLVSGNGYISN FT CGIARMLILTLCCGVL" FT CDS 4201..4311 FT /codon_start=1 FT /product="4 kDa protein" FT /note="p4; ORF11" FT /db_xref="GOA:E5KGF0" FT /db_xref="UniProtKB/TrEMBL:E5KGF0" FT /protein_id="ADQ57536.1" FT /translation="MLCCSAVVKSSIGLQLTLLICAFLLAVLVVSFCRRR" FT CDS 4308..4490 FT /codon_start=1 FT /product="7 kDa protein" FT /note="p7; ORF12" FT /db_xref="GOA:E5KGF1" FT /db_xref="UniProtKB/TrEMBL:E5KGF1" FT /protein_id="ADQ57537.1" FT /translation="MRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIAMFISYYLYAL FT IGICRKREGLTTSNG" XX SQ Sequence 4711 BP; 1415 A; 880 C; 1149 G; 1267 T; 0 other; gggactactc taccacacca gctttaaagc tgcgtgtagt atgcgacgat gtttctcgta 60 ttagtttcat aaaaattttt tattgctttg agtgtggttt ttgttgagtg gacgcgatgg 120 cgtttgaact gaaattaggg cagatatatg aagttgtccc cgaaaacaat ctgagagtta 180 gagtagggga tgcggcacaa ggaaagttta gtaaggcgag tttcttaaaa tacgttaagg 240 acgggacgca ggcggagtta acaggaatcg ctgtagtgcc ggaaaagtac gtattcgcca 300 cagcagcttt agctacagcg gcacaggagc cacctaagca gccgacaacg caagtggtgg 360 aaccaccaga agccgatata ggggtggtgc cggaatctga gactcttaca ccaaataagc 420 tggtttttga gaaagatcca gacaagttct taaagactat gggtaagggg atagctttgg 480 acttaacggg ggttacccat aaaccgaaag ttattaacga gccgggaaaa gtatcagtag 540 aggtagcaat gaagattaat accgcattgg tagagctgtg taagaaggtt atgggctccg 600 atgacacaac aaccaagaca aaattcttct tgtacgtgat gcagatcgct tgcacgttct 660 ttacatcgtc ttcgacggag ttcaaagagt tcgactacat agaaacggac gatggaaaga 720 agatatatgc ggtgtgggta tacgattgca ttaaacaagc tgccgcttca acgggttacg 780 aaaacccggt aaggcagtat ctagcatact tcacgccaac cttgatcacg gcgaccctga 840 atggtaaact ggtgatgaat gaaaaggtca tggcacagca tggagtacca ccgaaattct 900 ttccgtacgc gattgactgc gttcgtccga cgtacgatct gttcaataac gacgcaatac 960 tagcatggaa tttagctaga cagcaggcgt ttagaaataa gacggtgacg gccgataaca 1020 ccttacacaa cgtcttccaa ctattgcaga agaaatagtt acgatcgatg tccataaatc 1080 ggtgaaaaat ttagaaatat ttacctttta ttgataattc atgggggctt atacacacat 1140 agactttcat gagtcgcgat tgctggtaga caagcaagac tatctttctt tcaagtcagc 1200 aggtgaagct cctcctgatc ctcccgggta cgttcgccca gatagttata cgagggctta 1260 tttgatacaa agagctgact ttcctcgaat tgaaaactta tcagttacgt tatcgatagc 1320 cagtaataag ttagcttcag gtcttatggg aagcgacgca gtatcgtcgt cgtttatgct 1380 gatgaatgac gggggagatt acttcgagtg cggtgtgtgt cataacaaac cgtacttagg 1440 acgggaagtc gtcttctgta agaaatacat aggtgggaga ggagtggaga tcaccactgg 1500 taagaactac tcgtcgaaca actggaacga gtcgtcgtac gtattacatg tgaatatagt 1560 cggtgggacg gcacagacct cagttaattc tacttatacg caaacggacg ttagtggtct 1620 acccaaaaac tggacgcgta tctacaagat aacgaagata gtgtccgtag atcagaacct 1680 ctaccctggt tgtttctcaa gctcgaaact gaatgtaatg cttataaggt cactggtagt 1740 ttccccagta cgcaccttct ttagggacgt cttattgaaa cctttgagga aatcgttcaa 1800 cgctagagtc gaggatgtgt taagcatcga cgatgcgacg ttgttagcgc caagtccagt 1860 agcaccagcg cctacggaag gtgtaggtcc atcagagcaa ctagacgtag tggctttaac 1920 gtctgacgta acggaattga tcaacaccag ggggcagggc aagataagtt ttcccgactc 1980 agtgttatcg atcaatgaag cggatatcta cgacgagcgg tatttaccga ttacggaagc 2040 tctacagata aacgcaaggc tacgcagact cgttctttcg aaaggcggga gtcaaacacc 2100 acgagatatg gggaacatga tagtggccat gatacaactt ttcgtactct actctactgt 2160 aaagaatata agcgtcaaag atgggtatag ggtggagacc gaattaggtc aaaagaaggt 2220 ctacttgagt tattcggaag taagggaagc tatattagga gggaaatacg acgcgtctcc 2280 aaccaacact gtgcgatcct ttatgaggta ttttactcac accactatta cgctacttat 2340 agagaagaaa attcagccag cgtacactgc cctagctaag cacggcgtcc cgaagaggtt 2400 cactccgtac tgcttcgact tcgcactact ggataataga tattacccgg cagacgtgtt 2460 gaaggctaac gcaatggctt gcgctgtagc gattaaagcg gctaatttga ggcgtaaagg 2520 ttcggagacg tataacatct tagaaagtat ttgataatct agagatggaa ttcagaccag 2580 ttttaattac ggttcgtcgt gatcccggtg taaacactgg tagtttgaaa gtgatggctt 2640 atgacttaca ctacgacaac atattcgaca attgtgtggt aaagtcattt cgagacactg 2700 acactggatt caccgttatg aaagagtatt cgacgaattc agcgtttata ctaagtcctt 2760 ataaactgtt ttccgcggtt tttaataagg aaggtgagat gataagtaac gatgtaggat 2820 cgagtttcag ggtttacaac atcttttcgc aaatgtgtaa agatatcaac gagatcagcg 2880 agatacaacg tgctggttac ctagaaacat acttaggaga cgggcaagcc gacaccgaca 2940 tatttttcga cgtcttaacc aataacaaaa cgaagataag gtggttagtt aataaagacc 3000 atagcgcgtg gtgcgggata ttgaatgatt tgaagtggga agagagcaac aaggaaaaat 3060 ttaaggggag agacatatta gatacctaca tcttatcgtc tgattaccca gggtttaaat 3120 gaggttactt tcgctccgct atcttatctt gaggttgtca aagtcgctta aaacgaacga 3180 tcacctggtt ttgatactta taaaggaagc gcttataaac tattacaacg cctcttttac 3240 cgatgagagt gccgtactaa gcgactctcg cgaaagtata gggaattttc tcatagccag 3300 gtgtagttcg caaaactcct gccgcgtcat gaaggccttg atcactaata tagtctgtaa 3360 ggcgacgata gaaacagcta gaagctttat cggagactta atactcgtcg ctgactcttc 3420 tatctcagcg ttggaggaag cgaaatcaat tagagataat ttccgcttaa gaaaaaggag 3480 aggcaagtat ttttatagtg gtgattgtgg atccgacgtt gcgaaagtta ggtatatttt 3540 gtcaggggag aatcgaggat tagggtacac agattccttg aaactagcct gcgtaggtag 3600 agaaggaggt ggaaacatac tacagcactt actaatctca tctctaggtt aaagcatcat 3660 ggacctatcg tttattatcg tgcagatcct ttccgccttg tacaataatg acgtgacagc 3720 cctgtacatc ttgatcaacg cgtacaaaaa cgttgacgat acgacgcgct gggcagcgat 3780 gggcgatccg cgagctgagg ttgacgttgt aaaggcttac gtaactacta cagcgacgac 3840 tgagctgcat agaacaattc ttattgacag tatagactcc gccttcgctt acgaccaagt 3900 ggggtgtttg gtgggcatag ctagaggttt gcttaaacat tcagaagatg ttctggaagt 3960 catcaagtcg atggagttat tcgaagtgtg tcgtggaaag aggggaagta aaaaatatct 4020 tggatactta agtgatcaat gctctggcaa acatataatg ctaactcaga ccggactgac 4080 cgcagttgag gaagcagaca tactacgaac gaattatcta gtcagtggta atgggtatat 4140 ttcaaactgt gggatcgcta ggatgttgat cttgacgctt tgttgcggag tgctgtagaa 4200 atgttgtgtt gttcagccgt tgtcaaatct tcaatcgggt tacagttaac gttacttatt 4260 tgcgcatttt tgttagcggt gctagttgtc agcttttgta gaaggcgatg aggcacttag 4320 aaaaacccat aagagtagcg gtacactatt gcgtcgtgcg aagtgacgtt tgtgacgggt 4380 gggatgtatt tataggcgta acgttaatcg ctatgtttat tagttactat ttgtacgctc 4440 taattggcat atgtagaaaa agagaaggtt taacaaccag taatgggtaa aattccttca 4500 ataaatttaa aataaagaaa agtaagaaaa atgaaataat taggctagtc tttttgttcg 4560 tttttcgttt ttgtagaata ggttttattt cgaggtaaga tgactaaact ctacctcacg 4620 gtttaatact ctgatatttg taaaattagt ccgtaaagtc gatagtgata ttatattagt 4680 atagtataat aaacgccaaa atccaatcaa a 4711 //