ID HQ128706; SV 1; linear; genomic RNA; STD; VRL; 3427 BP. XX AC HQ128706; XX DT 07-SEP-2010 (Rel. 106, Created) DT 22-NOV-2010 (Rel. 106, Last updated, Version 3) XX DE Rhododendron virus A isolate GSMNP-Sugld-1, complete genome. XX KW . XX OS Rhododendron virus A OC Viruses; Riboviria; Amalgaviridae; Amalgavirus. XX RN [1] RP 1-3427 RX DOI; 10.1007/s00705-010-0770-5. RX PUBMED; 20721591. RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N., Valverde R.A.; RT "A novel monopartite dsRNA virus from rhododendron"; RL Arch. Virol. 155(11):1859-1863(2010). XX RN [2] RP 1-3427 RA Sabanadzovic S.; RT ; RL Submitted (12-AUG-2010) to the INSDC. RL Entomology & Plant Pathology, Mississippi State University, 100 Twelve Lane RL - Box 9775, Mississippi State, MS 39762, USA XX DR MD5; 15443c9496c4d7f0eaea73058a9764e0. XX FH Key Location/Qualifiers FH FT source 1..3427 FT /organism="Rhododendron virus A" FT /host="Rhododendron maximum" FT /isolate="GSMNP-Sugld-1" FT /mol_type="genomic RNA" FT /country="USA:Great Smoky Mountains National Park" FT /db_xref="taxon:878260" FT CDS join(95..1180,1182..3329) FT /codon_start=1 FT /ribosomal_slippage FT /product="putative fusion protein" FT /note="p121; putative ORF1/RdRp fusion protein" FT /db_xref="GOA:E1B260" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E1B260" FT /protein_id="ADM36020.1" FT /translation="MEDRRAEDRLDDDLPAGGGAPPPLRGLPPLPRAEPTDAELQAAID FT EAVAVVYEAGMPAGRFTVQRVHEIGLTVEVFVKQARAVFGGKNVDQADLIFTTGIKMGV FT CGSLRTMEPAGFWEVIRWARSNVGRQALETGQKVKKVEDKRAGTQTPNEVALCQIFTMQ FT QGIMAEEVKEARASTQQEIDELTRLLRLKRAEQVKVLAEIKDKYFPANIWEEPAEAERN FT ARCWEVYSAALVTAGRPAPIKTEAAFKLAIDAYKNFVDTEFKTRFIRSDEHQVALRKFA FT DERIHFLDGIGEPKKAGTFRSLLAVLGVEPSAQTTTHTEERNDEDDSGGESDVARGEEP FT EPEAGGGTSRPGASGRGAGRGKGNARLSRNVEVSAQVRLGELQTYRFRVHREMVEHRVR FT SIAVARSRFEAGIRRIIGGGEMRSWYTDSRMYRGGGNSNDAMKLLSAASVVTPGKFLDQ FT CYRVSSARKALRLPSGLRVPDSLAECQCKTFNDQASAGPFLRAFGIKKKYGLRRMLEEF FT MWGIYDRYGDGRGDERSLPFITGRIGFRTKLLEEGEALRKIRNGEPLGRAVMMLDALEQ FT ISSSPLYNILSGYCGRNRNKGWCEFRNTTVRASSDWGLLYSEVERAKCIVELDWSKFDR FT ERPSRDILFVIKVIISCFEPRNGRERRLLEAYEIMLERALVHRLLLTDAGGVLEMEGMV FT PSGSLWTGWLDTAMNILYIRAACLGAGIASDLYSSRCAGDDNLTLFWEDQSDGILGLVK FT QHLNNWFRAGIKDEDFIICRGPYYVERYQATFPIGTDLSEGTSRLMDSAIWVRLEGGPI FT IDANRGLSHRWEYRFHGKPKFLSCYWLPDGRPIRPAHDCLEKLLWPEGIHGDLETYEAA FT VISMIVDNPFNHHNVNHMLVRYVLIQQIKRQVVSPMTAEDIVYLCKFRDREGGSVPYPM FT IGPWRRGQKQGRMEDYPEVGRDIKNLKGFVAGISTLYARKGGGGIDAWRFMDIIRGDAD FT LGQGQFGNEVLEWARWLGRHEVTKFLRPIKRMRAEHGEVIIEGEGRRQAEAALRALREI FT LNEGTHRSCLDFSFFLSDRLRASCEDPRR" FT CDS 95..1309 FT /codon_start=1 FT /product="putative coat protein" FT /note="p44" FT /db_xref="GOA:E1B261" FT /db_xref="UniProtKB/TrEMBL:E1B261" FT /protein_id="ADM36021.1" FT /translation="MEDRRAEDRLDDDLPAGGGAPPPLRGLPPLPRAEPTDAELQAAID FT EAVAVVYEAGMPAGRFTVQRVHEIGLTVEVFVKQARAVFGGKNVDQADLIFTTGIKMGV FT CGSLRTMEPAGFWEVIRWARSNVGRQALETGQKVKKVEDKRAGTQTPNEVALCQIFTMQ FT QGIMAEEVKEARASTQQEIDELTRLLRLKRAEQVKVLAEIKDKYFPANIWEEPAEAERN FT ARCWEVYSAALVTAGRPAPIKTEAAFKLAIDAYKNFVDTEFKTRFIRSDEHQVALRKFA FT DERIHFLDGIGEPKKAGTFRSLLAVLGVEPSAQTTTHTEERNDEDDSGGESDVARGEEP FT EPEAGGGTSRPGASGRGAGRGKGKRKVVPERRSLRSSKTGRVTDVSVQGAQGDGGASRP FT KHRRR" XX SQ Sequence 3427 BP; 844 A; 662 C; 1076 G; 845 T; 0 other; gtattaattt atatcaaata caaaagactg caggtgactg atctgcgatc aaatcaccat 60 tctgcagttt gtaattctta tttgcaggtt tacgatggaa gatcgacgag ctgaagaccg 120 ccttgatgat gaccttcccg ctggaggggg agctccgccg ccactacgtg gccttccgcc 180 actgccacgt gctgaaccaa cagatgctga gctgcaagcc gctattgatg aggcagtcgc 240 cgtcgtttac gaagctggga tgccagctgg gcgcttcacc gttcagcgtg tccatgagat 300 tggattgact gtggaggtct tcgtcaagca ggcgcgggct gtgtttgggg gaaagaatgt 360 tgatcaggct gacttgattt tcactactgg cataaagatg ggggtgtgtg gctccctgcg 420 gaccatggag ccggctggtt tttgggaggt tattcgatgg gctcggagta atgttggacg 480 ccaggctctt gagacagggc agaaggtcaa gaaggttgag gacaagcgcg ccggcacgca 540 gacgccaaat gaagtagcac tctgtcagat tttcacaatg cagcagggta tcatggccga 600 agaagtgaaa gaggctaggg catcaacaca gcaggagatt gatgagttga caaggctcct 660 gcgtctgaaa agggctgagc aggtgaaagt attagctgag attaaggaca agtattttcc 720 tgctaatatc tgggaggaac cggcggaggc agaaaggaac gcccgctgtt gggaagtata 780 cagtgctgct ctggttactg cggggcgccc ggcccccatt aagactgagg cagccttcaa 840 gttggcgatc gacgcttaca agaatttcgt cgatacagag ttcaaaactc gtttcatccg 900 gtcagatgag catcaggttg ctcttaggaa gtttgcggat gagagaatcc attttctgga 960 cggcattgga gaacccaaga aggcagggac ttttcgcagc ctcttggcag tcctcggtgt 1020 tgaaccttct gctcagacaa ccactcatac ggaggagaga aatgatgagg atgattccgg 1080 tggggaaagt gatgttgccc ggggagagga gccagaacct gaggctggag gaggtactag 1140 tcgacccggt gcttctggaa ggggtgcagg caggggtaaa gggaaacgca aggttgtccc 1200 ggaacgtaga agtctccgct caagtaagac tgggcgagtt acagacgtat cggttcaggg 1260 tgcacaggga gatggtggag catcgcgtcc gaagcatcgc cgtcgctagg tcacggtttg 1320 aggctggaat ccgtcgcatc attggtgggg gtgagatgcg gagctggtat acggattcca 1380 ggatgtatag gggggggggg aattcgaatg atgcgatgaa attgttgagt gcggcatctg 1440 tagtgacccc tgggaagttc ttggatcaat gttacagggt atcgagtgct aggaaggcgt 1500 taaggttgcc cagtggattg cgggtccctg attcgctagc tgagtgtcaa tgcaaaacgt 1560 tcaacgatca ggcttctgct ggtccgttcc ttagggcttt cgggattaag aagaagtatg 1620 ggttaagacg catgttggag gaatttatgt gggggatcta cgatagatac ggggatggaa 1680 ggggcgacga gaggagtttg cctttcatca cggggagaat aggtttcagg acgaaattgc 1740 tggaggaagg ggaagcgttg cggaagataa ggaatgggga accattgggt agggctgtta 1800 tgatgttgga tgcccttgag cagatttcat cttcacctct ttataatatt ctctcagggt 1860 actgtgggcg taatcgcaat aaaggttggt gtgagttcag gaatactacc gtgcgagctt 1920 cttcagattg gggactattg tattctgaag ttgaaagggc taaatgtatt gtggagttgg 1980 attggtctaa gtttgaccgg gagcgacctt cgagggacat tcttttcgta atcaaggtta 2040 taatctcttg cttcgagcca aggaatgggc gggagagacg cttattagag gcttatgaga 2100 tcatgcttga gcgggcattg gtgcacaggt tgttactaac tgatgcgggg ggggtgcttg 2160 aaatggaagg gatggtaccg agtggttctc tctggaccgg gtggttagat accgcaatga 2220 atatcctcta tattcgcgca gcttgtttgg gtgccggtat agctagtgat ctctattcat 2280 ctaggtgcgc aggcgacgat aatttaacgc tgttttggga ggaccagtct gatggtatct 2340 taggtttggt gaagcagcac ctcaacaact ggtttagagc tgggatcaaa gatgaggact 2400 tcattatatg taggggccca tactatgtcg agcgttatca ggcgactttt ccgataggga 2460 ctgatctgag tgagggcacc tctaggttga tggattcggc catttgggtc aggttagaag 2520 ggggacctat tatcgacgcc aatcgaggtt tatctcacag atgggaatat agatttcatg 2580 gcaagcctaa gttcttatcg tgctactggc tgcccgatgg ccgtccaatc cggcctgctc 2640 acgactgcct cgagaagtta ctgtggccag aaggcattca tggagacttg gagacttatg 2700 aggctgcggt tatctctatg atagtggata accccttcaa ccaccataac gtaaatcata 2760 tgctggttag gtatgtgctt attcagcaaa tcaaacgaca ggtagtcagc ccaatgacag 2820 cggaggacat tgtgtatcta tgtaaattca gggataggga agggggaagt gttccctatc 2880 cgatgatcgg accatggaga aggggacaaa agcagggaag gatggaggat tacccagagg 2940 tggggaggga catcaagaat ctaaaagggt ttgtggcggg gattagcacg ctttacgcta 3000 ggaagggtgg tggtggcatt gatgcctgga gattcatgga catcatacgt ggggacgcgg 3060 atttggggca agggcaattc ggaaatgagg tgctagagtg ggccagatgg ttggggaggc 3120 atgaggtcac caagttcttg aggcctatca agaggatgag agcagaacat ggagaagtaa 3180 tcattgaagg tgaagggagg cggcaagcgg aagcagctct tagggctcta agagaaatcc 3240 ttaatgaagg cacacatagg tcatgcttag acttttcctt cttcctctca gaccgacttc 3300 gggcttcatg tgaggacccc agacgctgat gtcgcctggt agacacccac atgtcccatt 3360 aataagattt atacattaac tgcctgatta cgtttacgta actacctttt gtatttgtac 3420 acaggtc 3427 //