ID   HQ012662; SV 1; linear; genomic RNA; STD; VRL; 1141 BP.
XX
AC   HQ012662;
XX
DT   18-OCT-2010 (Rel. 106, Created)
DT   16-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Raspberry latent virus segment S10, complete sequence.
XX
KW   .
XX
OS   Raspberry latent virus
OC   Viruses; Riboviria; Reoviridae; unclassified Reoviridae.
XX
RN   [1]
RP   1-1141
RX   DOI; 10.1016/j.virusres.2010.11.008.
RX   PUBMED; 21144872.
RA   Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.;
RT   "Complete sequence and genetic characterization of Raspberry latent virus,
RT   a novel member of the family Reoviridae";
RL   Virus Res. 155(2):397-405(2011).
XX
RN   [2]
RP   1-1141
RA   Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.;
RT   ;
RL   Submitted (03-AUG-2010) to the INSDC.
RL   Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av,
RL   Corvallis, OR 97330, USA
XX
DR   MD5; ff52fc8461ed7722d6acb950a1c7f391.
XX
CC   GenBank Accession Numbers HQ012653-HQ012662 represent the complete
CC   genome of Raspberry latent virus isolate RpLV9A.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1141
FT                   /organism="Raspberry latent virus"
FT                   /segment="S10"
FT                   /host="raspberry"
FT                   /isolate="RpLV9A"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="20-Oct-2007"
FT                   /identified_by="Diego Quito, Robert Martin, Wilhelm
FT                   Jelkmann"
FT                   /db_xref="taxon:907191"
FT   CDS             12..1040
FT                   /codon_start=1
FT                   /product="putative spike protein p10a"
FT                   /db_xref="UniProtKB/TrEMBL:E3VL91"
FT                   /protein_id="ADO27696.1"
FT                   /translation="MMANTLTIDSLTPTLETAYGATSQTPRNPTNILAILFDIFKHPAR
FT                   PQPRRAGHAGNPGNKSTSLALLVTLEQSTSLHQALLQYASRWPNALLAELTSLLRETNR
FT                   LAQKDGRCFITPIFMGKLRNLVQNQLANELSAIQYRRALDLFVMRSAPPEFTYNPAQNR
FT                   IALTDTSMKLIYQEPARRRIADTAFNWFGMDYGVVPYRCGNQTYAEDGANILHPKAHLL
FT                   KQAYAVQNAALAELMVQSSPFQTIPQSIPEGQFTLAACPMTNRILKDSHLWYRKTWDQD
FT                   TRQRVNPGIWNVDLDDQSWNTAPHSFGFPDSMTSDKLKWQYAQYFVMDYINTYTALYVV
FT                   NV"
FT   CDS             269..871
FT                   /codon_start=1
FT                   /product="protein P10b"
FT                   /db_xref="UniProtKB/TrEMBL:E3VL92"
FT                   /protein_id="ADO27697.1"
FT                   /translation="MAKCPACRINLIASRNKPFGTERWTMFHNSNIYGEIAQFGSESVG
FT                   QRAISNTVSESVRSIRHAFSSPGIYIQSSSESDRSNRHIDEANLSRASETENSGHCFQL
FT                   VWNGLWSRALQMWQPNIRRRRSEHSTSEGSSVKAGLRSSKRSSRRAHGSVLPVSDDPSI
FT                   HPGRTVYSCCLSYDQSHPEGFSPVVSEDLGSGYETKG"
XX
SQ   Sequence 1141 BP; 324 A; 300 C; 233 G; 284 T; 0 other;
     agttaaattc catgatggca aatactctga ctatcgactc cctcacaccc acattagaaa        60
     cagcatacgg agctacctca caaacaccac gcaatcctac taacatctta gctatcctct       120
     tcgatatctt caaacatcca gctagacccc aaccgcgcag agccggacac gccggaaatc       180
     caggaaataa atcgacttct ttagcattac tggtaacact cgaacaatcc accagtctac       240
     accaggcatt acttcaatac gcttcacgat ggccaaatgc cctgcttgca gaattaacct       300
     cattgcttcg agaaacaaac cgtttggcac agaaagatgg acgatgtttc ataactccaa       360
     tatttatggg gaaattgcgc aatttggttc agaatcagtt ggccaacgag ctatcagcaa       420
     tacagtatcg gagagcgtta gatctattcg tcatgcgttc agctcccccg gaatttacat       480
     acaatccagc tcagaatcgg atcgctctaa cagacacatc gatgaagcta atttatcaag       540
     agccagcgag acggagaata gcggacactg ctttcaattg gtttggaatg gattatggag       600
     tcgtgcctta cagatgtggc aaccaaacat acgccgaaga cggagcgaac attctacatc       660
     cgaaggctca tctgttaaag caggcttacg cagttcaaaa cgcagctctc gccgagctca       720
     tggttcagtc ctccccgttt cagacgatcc ctcaatccat cccggaagga cagtttactc       780
     ttgctgcttg tcctatgacc aatcgcatcc tgaaggattc tcacctgtgg tatcggaaga       840
     cttgggatca ggatacgaga caaagggtta accctggaat ttggaacgtt gacttagatg       900
     accaaagttg gaacacggca cctcactcat ttggatttcc tgacagcatg acaagtgata       960
     aactcaagtg gcagtacgct caatatttcg ttatggacta cattaatacc tacaccgctc      1020
     tgtacgttgt caacgtgtga ctttgggttt catagtcccg cacttccagc ctgtcaacct      1080
     ggcggtccgg agcgatattt gcccctaggt ccttcccttt gaatctggaa tttgtgaata      1140
     c                                                                      1141
//