ID   HQ012661; SV 1; linear; genomic RNA; STD; VRL; 1205 BP.
XX
AC   HQ012661;
XX
DT   18-OCT-2010 (Rel. 106, Created)
DT   16-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Raspberry latent virus segment S9, complete sequence.
XX
KW   .
XX
OS   Raspberry latent virus
OC   Viruses; Riboviria; Reoviridae; unclassified Reoviridae.
XX
RN   [1]
RP   1-1205
RX   DOI; 10.1016/j.virusres.2010.11.008.
RX   PUBMED; 21144872.
RA   Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.;
RT   "Complete sequence and genetic characterization of Raspberry latent virus,
RT   a novel member of the family Reoviridae";
RL   Virus Res. 155(2):397-405(2011).
XX
RN   [2]
RP   1-1205
RA   Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.;
RT   ;
RL   Submitted (03-AUG-2010) to the INSDC.
RL   Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av,
RL   Corvallis, OR 97330, USA
XX
DR   MD5; 09c2c06c8200718fbfef202c1d5a7bab.
XX
CC   GenBank Accession Numbers HQ012653-HQ012662 represent the complete
CC   genome of Raspberry latent virus isolate RpLV9A.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1205
FT                   /organism="Raspberry latent virus"
FT                   /segment="S9"
FT                   /host="raspberry"
FT                   /isolate="RpLV9A"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="20-Oct-2007"
FT                   /identified_by="Diego Quito, Robert Martin, Wilhelm
FT                   Jelkmann"
FT                   /db_xref="taxon:907191"
FT   CDS             121..1125
FT                   /codon_start=1
FT                   /product="non-structural protein NSP9"
FT                   /db_xref="UniProtKB/TrEMBL:E3VL90"
FT                   /protein_id="ADO27695.1"
FT                   /translation="MNPITVTEQTLGGRKVKVGTSPVWEGVLEWLKTGKVPLVVQQYTQ
FT                   AHSLPSFEPMNHSLSEDENICVLPTKQGILLYLPADLDKMAVKVTVVDGKEKKLPNYDG
FT                   TDLGLAKKSGGGRTMCHQMSWNSQSLMTLVAIIPKILLEIEDLFQGWDGATNEGMRTAK
FT                   SLMTRYIDVNLNFLPRMCQFGVACIYLSGTFNVFEHSMLRYINGQFTAFELIRNRRADG
FT                   MDIRDRLKMLKNGANPDIEVVLYHLKLTPSGHTVISQLGDDFTMATEVKQGCALKLMGN
FT                   RAGKISVGDVDLDAFTASVSLGKKPNPVPHSTIGPVGASRHVQGEQPRFTVPK"
XX
SQ   Sequence 1205 BP; 362 A; 217 C; 300 G; 326 T; 0 other;
     agttaaaacc ttttgtcttg gcgtgactag actccagaga tacccatatt tctatttagt        60
     tcaataccga gcgacatctc atttcttcac aactgacacc cgacataaaa tagaagaatc       120
     atgaatccga ttacggtaac tgaacagacg ttggggggaa gaaaggttaa ggtcggcaca       180
     tcaccggtgt gggaaggagt attagaatgg ttaaaaacag gaaaggttcc tcttgttgtt       240
     caacagtaca ctcaggcgca ttcgctgccc tctttcgagc ctatgaatca ttcgctgtct       300
     gaggatgaga acatctgtgt attaccaacc aaacaaggaa tcttgcttta tctacccgct       360
     gatctagata agatggctgt gaaagtgacc gttgtggatg gaaaagaaaa gaagctgccc       420
     aattatgatg gtaccgattt aggcttggct aagaaaagtg gaggaggtag aacaatgtgt       480
     catcaaatgt cttggaattc gcaatcactg atgaccctag tggccataat acctaagatc       540
     ctactggaaa ttgaagatct atttcaagga tgggatggtg caacgaacga gggaatgcgt       600
     actgcaaaga gcctaatgac tagatacatt gatgttaact tgaactttct tcccagaatg       660
     tgtcaatttg gcgttgcttg tatttatttg agcggaactt tcaatgtttt cgagcattcc       720
     atgttacggt acattaatgg tcagtttaca gcattcgagc tgattaggaa cagaagggct       780
     gatggaatgg acatccgtga tcggttaaaa atgttgaaga acggggccaa tcctgatatt       840
     gaagtcgttt tgtaccatct aaaactgact ccaagtggac atactgtgat atcacagttg       900
     ggagatgact ttacaatggc aactgaagta aaacagggtt gtgctttgaa attgatgggt       960
     aacagagcag gaaagattag tgtgggagat gttgacctgg atgctttcac ggctagtgtt      1020
     agtttgggaa agaagcctaa cccagtaccc catagtacaa tcggacctgt tggcgcatct      1080
     cgacatgttc aaggagaaca accaagattt actgtaccga agtaataagt tgtttaacgg      1140
     ggtccgacgg taggaatgtg ggataaatag gctctctgct ggtcgaaaga gggttttgcg      1200
     aatac                                                                  1205
//