ID   HQ012660; SV 1; linear; genomic RNA; STD; VRL; 1936 BP.
XX
AC   HQ012660;
XX
DT   18-OCT-2010 (Rel. 106, Created)
DT   16-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Raspberry latent virus segment S8, complete sequence.
XX
KW   .
XX
OS   Raspberry latent virus
OC   Viruses; Riboviria; Reoviridae; unclassified Reoviridae.
XX
RN   [1]
RP   1-1936
RX   DOI; 10.1016/j.virusres.2010.11.008.
RX   PUBMED; 21144872.
RA   Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.;
RT   "Complete sequence and genetic characterization of Raspberry latent virus,
RT   a novel member of the family Reoviridae";
RL   Virus Res. 155(2):397-405(2011).
XX
RN   [2]
RP   1-1936
RA   Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.;
RT   ;
RL   Submitted (03-AUG-2010) to the INSDC.
RL   Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av,
RL   Corvallis, OR 97330, USA
XX
DR   MD5; a761987fa68c53889ca310e41836bb36.
XX
CC   GenBank Accession Numbers HQ012653-HQ012662 represent the complete
CC   genome of Raspberry latent virus isolate RpLV9A.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1936
FT                   /organism="Raspberry latent virus"
FT                   /segment="S8"
FT                   /host="raspberry"
FT                   /isolate="RpLV9A"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="20-Oct-2007"
FT                   /identified_by="Diego Quito, Robert Martin, Wilhelm
FT                   Jelkmann"
FT                   /db_xref="taxon:907191"
FT   CDS             53..1858
FT                   /codon_start=1
FT                   /product="non-structural protein NSP8"
FT                   /db_xref="UniProtKB/TrEMBL:E3VL89"
FT                   /protein_id="ADO27694.1"
FT                   /translation="MDELTLSQGIFNYKLIHHTIVQKNVFEQSCTLTPAERATLRSRIV
FT                   PRNGELTILPLKTQAAIGKWITSAYERAGNSFKRPRAIACLFQPTEKVTYYYTKKDQSD
FT                   NKKVFEKILKCSWINFKQVKVLPEVEPDSPIILPNGTLAQDQAIDTIPPTQISEIIELL
FT                   KYEGERARGTVLFQFGVDGLDQFVHPAIKILASHLFSIRIASPGFGLNYSHPYCQAVFL
FT                   RPFTNGMLSRLSEDDLLKELKPWKDKCVVIGNELSPSVVNVMSMLDIPRVPNVSSQSGS
FT                   EISLYSRLLGHKLIARYYTYLDHSTVRELLSVDDEERLRKNMAGLLFCSRALIPNPEPI
FT                   VRLDTLNDYEFGVVPTVNPYPLHTAGADLLKSWVDAVSDPKASRTPVILIVCAPKGSMK
FT                   STLTKRMVDYFTSNVKGQEALRFGRVDSDAWGKWLANPKLFSTWVEFDSFQNNDTLKSQ
FT                   IEIDMELLLEQNKVSDINSVERDVMEGLQADFCVYMQGMLVNQENGLEKFVNLLLQIPD
FT                   LPRAVIWEVHTHSEIGLLPPTHFICNLMPSWNTAYAVQSRPRPTSSPMVQLALHYLYKS
FT                   VSQYMIYMNLHLGDCARSIGYVPGI"
XX
SQ   Sequence 1936 BP; 602 A; 367 C; 404 G; 563 T; 0 other;
     agtaaaatct ctagagctat caccgcccaa ccacaacttc tcaagtcgag caatggatga        60
     actcacgtta tcacaaggaa tttttaacta caaactcata caccacacca tcgttcaaaa       120
     gaatgttttc gaacaaagct gcaccctaac cccggccgaa cgtgctacac tgcgatcaag       180
     aattgttcca aggaatggag agttaacgat attgcccttg aagacccaag ctgcaattgg       240
     aaaatggatt acatcagcgt atgagagagc cggaaacagc ttcaaaagac caagagctat       300
     agcatgttta tttcaaccaa ctgaaaaagt gacttattat tatacaaaga aagatcaaag       360
     tgataataag aaagtttttg aaaagatact caaatgttca tggattaatt tcaagcaagt       420
     gaaggtacta ccggaagtag agcccgattc tccaattatt ttaccaaacg gcacactggc       480
     tcaagatcaa gccatcgaca ctattcctcc cactcagatc agtgagatta ttgagcttct       540
     aaaatatgaa ggagagcgag cacgaggaac ggtattattt caatttggtg tagacggact       600
     cgaccaattc gttcatcccg ctataaagat tttagcttct catttgtttt cgattaggat       660
     cgcttcaccc ggcttcggat tgaactattc ccatccatat tgtcaggctg tatttcttag       720
     accttttact aacggaatgt tgtcaaggct gtctgaagat gatttgttga aagagttaaa       780
     accttggaag gataagtgtg tagtaattgg caatgaacta tccccatctg tggttaatgt       840
     tatgagcatg ttggacattc caagagtacc aaatgtttcc tcacaatcgg gaagtgaaat       900
     atctctttat tcgcgattac ttggacataa attaatagca cgttattaca catatttaga       960
     tcattctacg gtaagggaat tattgtctgt tgatgatgag gaacgtttgc gaaagaatat      1020
     ggctggactt ctcttttgta gtcgagcttt aataccaaat cctgagccaa ttgtacgtct      1080
     tgatacttta aatgattatg aatttggggt tgtgccaaca gtgaatcctt atcctttaca      1140
     caccgccgga gctgacttat taaaatcgtg ggttgatgct gtttctgatc ccaaggcttc      1200
     tagaactcct gtaatcttaa tagtgtgtgc gcctaaagga agtatgaaat ctacattaac      1260
     aaaaaggatg gtggattatt ttacctctaa tgttaaaggt caagaagcgt taagatttgg      1320
     aagagtagat tcagatgcat ggggcaagtg gttagctaat ccgaaattat tctcaacttg      1380
     ggtagaattt gacagctttc aaaataacga cactctgaaa tcacaaattg aaattgacat      1440
     ggaattacta ttggaacaaa ataaagtaag tgatatcaac tctgtcgaaa gggatgtgat      1500
     ggaaggattg caagctgatt tttgcgttta catgcaggga atgttggtga accaagagaa      1560
     tggattagaa aagtttgtta accttcttct tcaaatacca gacctaccta gagctgttat      1620
     ttgggaggta catactcatt ctgaaatagg cctcttacct ccaacacatt tcatttgtaa      1680
     tttaatgcca tcgtggaata ccgcctatgc cgtccaatca aggccaagac caacgagttc      1740
     tccaatggtg cagttagcct tacactatct ttataaatca gtcagtcagt atatgatcta      1800
     catgaatttg catttgggtg attgcgcgcg ctccattggc tatgttcctg ggatttaatg      1860
     tgggtaagta aggggtagcc gtggcgaggg acttatcacc ccaagtgacg gagcgacgat      1920
     agaggtttgc gattac                                                      1936
//