ID   HQ012658; SV 1; linear; genomic RNA; STD; VRL; 1996 BP.
XX
AC   HQ012658;
XX
DT   18-OCT-2010 (Rel. 106, Created)
DT   16-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Raspberry latent virus segment S6, complete sequence.
XX
KW   .
XX
OS   Raspberry latent virus
OC   Viruses; Riboviria; Reoviridae; unclassified Reoviridae.
XX
RN   [1]
RP   1-1996
RX   DOI; 10.1016/j.virusres.2010.11.008.
RX   PUBMED; 21144872.
RA   Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.;
RT   "Complete sequence and genetic characterization of Raspberry latent virus,
RT   a novel member of the family Reoviridae";
RL   Virus Res. 155(2):397-405(2011).
XX
RN   [2]
RP   1-1996
RA   Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.;
RT   ;
RL   Submitted (03-AUG-2010) to the INSDC.
RL   Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av,
RL   Corvallis, OR 97330, USA
XX
DR   MD5; 48b2087a76ab062740a801c88ad9e9ef.
XX
CC   GenBank Accession Numbers HQ012653-HQ012662 represent the complete
CC   genome of Raspberry latent virus isolate RpLV9A.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1996
FT                   /organism="Raspberry latent virus"
FT                   /segment="S6"
FT                   /host="raspberry"
FT                   /isolate="RpLV9A"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="20-Oct-2007"
FT                   /identified_by="Diego Quito, Robert Martin, Wilhelm
FT                   Jelkmann"
FT                   /db_xref="taxon:907191"
FT   CDS             21..1928
FT                   /codon_start=1
FT                   /product="putative outer capsid protein P6"
FT                   /db_xref="UniProtKB/TrEMBL:E3VL87"
FT                   /protein_id="ADO27692.1"
FT                   /translation="MASYTNYMITFLNTVQRIHDQNYSDFPPANVQVRRITFQDVEEYI
FT                   RDLPEEIKDYTTKTWNEVQGESPMVIQIPFCTTNTRQIRNYAAIVNLAYSCSMAWPTPL
FT                   PNGRFNLEDVIAEGFSSDEFLPTYRVPPAFVRDDQPPSTSDHSPRAQTPPEGNDFDPDP
FT                   DFVEPAPVLAIVPHRHLPNTDQPVLPRFGYREEVRDDDADMFDGDDASEVGEVGEEEEY
FT                   LDPLPEQDRENLALVRSRVVKSLFDRKKVGEVDSVMMRPRFNPGVVPRYGTVKHYEYKE
FT                   EPDSGWLSEAGDSLVVMNGLVQGDPIPITDIDGIIIWNAREDADVNQRDFTVLEGDVFS
FT                   MNPRILSGEFYQERVNVERNLRLILLGNCLDKRLVEETDRACSNYLIGTQDDIVNEANT
FT                   DQDRNERVCVMTSTGLICSSYYSCPAKHRNKIIPIEIGRRVATRLRRIIAMMVEGDQRS
FT                   VEVLLMYWMRIIYPDTYSPVRNHITVGDFTWARSPVTRDFEIITPYLEGTNDDDGAVQN
FT                   PERWYPSIFNPHNLFQALNSFPLFLLILDQCSAEPSLEFEVLSERLNELQLAYFKVIFH
FT                   CTTLNYVLSNNPCSNMNLAIGPYPMVYQKMRDYAYMVCKSSVQAEKAFIYLILGLLGFA
FT                   "
XX
SQ   Sequence 1996 BP; 601 A; 373 C; 455 G; 567 T; 0 other;
     agttttaatc ctacccgaaa atggcgagct atacaaacta catgatcact ttcttaaaca        60
     cggtgcaacg aattcacgac caaaattatt cagacttccc tccagcaaac gttcaagtaa       120
     gaagaatcac attccaggat gttgaggaat atattaggga tcttcccgag gaaatcaaag       180
     attacacaac aaagacatgg aatgaagtcc aaggagagag tccaatggta atacagattc       240
     cattctgtac aacgaacacc agacagataa gaaattatgc tgcgatagtc aaccttgctt       300
     attcttgttc tatggcatgg cctacgcctt tacccaacgg acgattcaat ttagaagatg       360
     ttattgcaga agggttttca tcagacgagt ttctaccaac gtatcgcgta cctccagcat       420
     ttgtccgaga tgatcagcca cccagtacgt ctgaccattc accaagagcg caaactcctc       480
     cggaagggaa tgatttcgat ccagaccctg attttgttga acctgctcct gtattagcta       540
     tcgtaccaca tcgtcactta cctaatactg atcaacctgt tctacctagg tttggatatc       600
     gcgaagaagt acgggatgac gatgctgaca tgttcgatgg agacgatgct tcagaagtag       660
     gtgaagttgg agaggaggaa gaatatctag acccgttacc tgaacaagac cgtgaaaatt       720
     tagctcttgt acgtagtaga gtggttaaat cgttgtttga taggaagaaa gtaggagaag       780
     tagattctgt gatgatgcgt cctcgattca atcccggtgt tgtgcccagg tatggaactg       840
     tgaaacatta tgaatacaag gaagagcccg actcaggatg gttatcagaa gcaggagatt       900
     ctttggtggt tatgaatgga ttagttcaag gggacccgat tccaataacc gatattgatg       960
     gaattattat atggaatgcg agggaagatg ctgatgtaaa ccagagagac tttactgttt      1020
     tagaaggcga cgtgttttca atgaacccta ggattctaag tggagagttt tatcaagaaa      1080
     gggtgaatgt tgaaaggaat ctaaggttga tattgttagg aaattgtttg gataaaagat      1140
     tggttgaaga aacagatagg gcgtgttcaa attatcttat tggcacccaa gatgacattg      1200
     tgaatgaggc taacactgat caagatagga atgaaagggt gtgcgttatg acttccactg      1260
     gtcttatttg ttctagttac tattcatgtc cagcaaagca taggaataaa atcattccaa      1320
     ttgagatagg aaggagagtc gcgacccgat tgcgaaggat catagctatg atggttgagg      1380
     gagatcagcg gtcagtagag gttttattaa tgtattggat gcgtattatc tatccagata      1440
     cttacagtcc agtacgtaat catataacag ttggagattt cacatgggct cgttcccctg      1500
     ttacccgtga ttttgaaatt attacacctt acttagaggg aaccaacgat gatgacgggg      1560
     ccgttcaaaa tccagaaaga tggtatccct caattttcaa tcctcataat ctattccaag      1620
     cattaaactc ctttcctctt tttctactaa tattggatca atgcagcgct gaaccatcgt      1680
     tagagttcga ggtcttgtcg gaacggttaa acgaacttca acttgcttat tttaaagtaa      1740
     tttttcattg taccactctg aattacgtcc tttctaacaa cccgtgtagt aatatgaatc      1800
     tcgcgatagg accttatcct atggtgtacc agaagatgag agactacgcg tacatggttt      1860
     gtaagtcaag tgtgcaagca gaaaaggcat tcatctacct aatactaggg ttgcttggat      1920
     ttgcttgacg tgttctttga atttgatgtg tagggccacg tagttttggg acgcgcccct      1980
     aggattaagc gaatac                                                      1996
//