ID HQ012657; SV 1; linear; genomic RNA; STD; VRL; 2563 BP. XX AC HQ012657; XX DT 18-OCT-2010 (Rel. 106, Created) DT 16-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Raspberry latent virus segment S5, complete sequence. XX KW . XX OS Raspberry latent virus OC Viruses; Riboviria; Reoviridae; unclassified Reoviridae. XX RN [1] RP 1-2563 RX DOI; 10.1016/j.virusres.2010.11.008. RX PUBMED; 21144872. RA Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.; RT "Complete sequence and genetic characterization of Raspberry latent virus, RT a novel member of the family Reoviridae"; RL Virus Res. 155(2):397-405(2011). XX RN [2] RP 1-2563 RA Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.; RT ; RL Submitted (03-AUG-2010) to the INSDC. RL Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av, RL Corvallis, OR 97330, USA XX DR MD5; e0d6648d2131cc8f32af0fa87a2808d3. XX CC GenBank Accession Numbers HQ012653-HQ012662 represent the complete CC genome of Raspberry latent virus isolate RpLV9A. XX FH Key Location/Qualifiers FH FT source 1..2563 FT /organism="Raspberry latent virus" FT /segment="S5" FT /host="raspberry" FT /isolate="RpLV9A" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="20-Oct-2007" FT /identified_by="Diego Quito, Robert Martin, Wilhelm FT Jelkmann" FT /db_xref="taxon:907191" FT CDS 109..2265 FT /codon_start=1 FT /product="non-structural protein NSP5" FT /note="putative capping enzyme" FT /db_xref="UniProtKB/TrEMBL:E3VL86" FT /protein_id="ADO27691.1" FT /translation="MNNQLSSNGTNGGILFGTFTGSTSSAVPVQTAPFSEPSFSFSPPT FT KEVKGSLSDLVTWLSMNDSLYCLKMITNHPVEATVLRGLPAYSNIKGEPWFDELFMCVG FT LTSAAYRAEVKKEASVPRKPELIRGMGPIDIFSCCIISMLHHRNFLVISGNTCEYYFFQ FT SDPNQMETCVICVQEVGLKTGKYRFARVNATEVGLSSVCRRVLVPCTVLLDQPVDMTLS FT TCEIMSIHPFEDDETGKITFIKTPIYALDLAKNILEQLFAKGMTNVPTLDKGAAVEECE FT AGEAKRRRFLSDEVAKVRADMVTEALQKGMKLNIDGASSRFTIPKPTQSLVTSKVNRDL FT LKKTKMPVNTEANRQEWLLEGARLSDQIRIGVKPKEVKMTGLRHWYSCIVMNYKKKAMV FT KEGYNVATYLPGGLLIGTGLGNSVCCEIVWTPCAIIARYEIFNIGNERTRSIISINETS FT SCNVPGRPFLGYCHIKGKWFTSDLFTRYFEVDLQKKELAVLVQILTSMTATVLSPSLTY FT NEGMRIKQAIEMTNRDRPFRMRNKQANAHPLRLVPIIHTKVKAMVQTRGDVELSALSSV FT WPSVSGEDYSKDNDVFIEGERVPGPGVQPDDLRRHSFLSNCAWREHFQVLPDRYLMPCG FT TTEPKINHRLYDHQCMYSYLGEMSENCDERGFTHEQIPSCDRCNRYYPHPAMAGLCAIF FT GCPGGEGDILNYGVQINHLLPQRL" XX SQ Sequence 2563 BP; 780 A; 454 C; 606 G; 723 T; 0 other; agtttttttt ccacgcgatc taagaccttt gcattcacca accattcagc tatcagattt 60 tgttcaaaca gcaatcacac caaccaacca agaaatccat aaccaagcat gaataaccag 120 ttaagctcaa acggcaccaa cgggggaatc ctttttggaa catttactgg atctacttcc 180 tcagcagtac cagttcaaac cgcgcctttt tccgagccat cattttcgtt ctcaccacca 240 actaaagaag tgaaagggtc tctgtctgat ttggtcactt ggttatcgat gaatgattct 300 ttatactgct tgaagatgat taccaaccat cctgttgaag caaccgttct gcgaggattg 360 ccggcatatt ccaatatcaa aggggagccc tggtttgacg aattattcat gtgtgtcggt 420 ttaacatctg ccgcgtaccg tgctgaagtc aagaaagaag cgtcagtacc aaggaaacct 480 gaactgatta gaggcatggg accaattgat atcttttctt gctgcatcat atcaatgcta 540 catcacagga atttcttggt catcagcgga aatacgtgtg agtactactt ctttcagtca 600 gatcccaacc aaatggaaac ctgtgtgata tgtgttcaag aagtcgggtt gaagactgga 660 aaatatcgtt tcgcaagggt taatgcaact gaagttgggt tatcatccgt gtgtcgtcga 720 gtgctggtac catgtactgt attattagac caaccagttg atatgacatt gagcacttgt 780 gaaataatgt cgatccaccc tttcgaggat gatgaaacag ggaagataac gtttattaaa 840 acaccaattt atgcacttga tctggctaag aacattctcg agcaattgtt cgcgaaaggt 900 atgaccaacg tcccaacttt ggataagggt gcggccgttg aagagtgtga agcaggagag 960 gcgaaaagaa ggaggttctt atctgatgaa gtggccaaag ttcgtgctga tatggttact 1020 gaggctttac aaaagggtat gaagttaaac atcgacggcg cttcatcgcg tttcaccatt 1080 cctaagccga cccagagtct tgtgacttcc aaggttaatc gtgatttgct taagaagacg 1140 aagatgccag taaatactga agcgaacaga caagagtggc ttttagaagg agctagactt 1200 tctgatcaga taaggattgg agtgaaaccc aaagaggtaa aaatgacagg attaaggcat 1260 tggtattcgt gtatcgttat gaattataag aagaaagcaa tggtcaagga ggggtacaat 1320 gtagctacct atttgccagg aggattattg ataggaactg gactaggtaa ttctgtgtgt 1380 tgtgagattg tctggacccc ttgtgctata atagctaggt atgaaatttt taatatcgga 1440 aatgaaagaa caaggtctat cattagcatt aatgaaacat caagttgtaa tgttccaggg 1500 aggccattct taggttattg tcatatcaaa ggaaaatggt tcacaagtga cttgtttaca 1560 cgatattttg aagtggatct tcagaagaag gaattggcag tgttggtcca aattttaact 1620 agtatgacgg caactgtgtt gtcaccgtct ctgacgtata atgaagggat gcggattaag 1680 caggctatcg aaatgacaaa cagggatcgg ccattcagaa tgcggaataa acaggctaac 1740 gctcatccct tgagattggt tccaatcatt cacacgaagg tgaaggcaat ggttcaaacc 1800 aggggagatg tagaattgag cgctttatct tctgtatggc cttctgtaag cggagaagat 1860 tatagcaagg ataatgacgt gtttattgaa ggagagaggg ttcctggtcc tggggttcag 1920 ccggatgatt tgagaaggca ctcttttcta agtaactgcg cctggcgtga gcatttccaa 1980 gtgcttcctg atagatatct tatgccatgt ggaacgacag aaccaaagat caaccataga 2040 ttatacgatc accaatgtat gtactcctat cttggagaga tgagcgagaa ttgtgatgag 2100 agaggcttta ctcacgaaca aattccatca tgtgatagat gcaaccggta ttatcctcat 2160 cctgcgatgg ctggtttatg tgctatattt ggatgtcctg gaggtgaggg tgatattcta 2220 aactatggag tacagattaa ccatttgcta ccacagaggc tttaagactg aatgcattta 2280 taagactgtt agtgataaca atactaagaa caataataat aatagtcata ataataataa 2340 taataataat aataataata ataatgataa tactaataat actaatgata ataataggaa 2400 cattataacg tggcgctgtt tacttctttt ggtatgtctc gtttggttgc gtatgggtgt 2460 acgggttttg gagagggagt gacgcacctg gaaggcttct gggattaggt tctacttgta 2520 gaatgtgatc tgggaggctg gaaacgtggg aaaaagtgaa tac 2563 //