ID HQ012656; SV 1; linear; genomic RNA; STD; VRL; 3650 BP. XX AC HQ012656; XX DT 18-OCT-2010 (Rel. 106, Created) DT 16-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Raspberry latent virus segment S4, complete sequence. XX KW . XX OS Raspberry latent virus OC Viruses; Riboviria; Reoviridae; unclassified Reoviridae. XX RN [1] RP 1-3650 RX DOI; 10.1016/j.virusres.2010.11.008. RX PUBMED; 21144872. RA Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.; RT "Complete sequence and genetic characterization of Raspberry latent virus, RT a novel member of the family Reoviridae"; RL Virus Res. 155(2):397-405(2011). XX RN [2] RP 1-3650 RA Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.; RT ; RL Submitted (03-AUG-2010) to the INSDC. RL Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av, RL Corvallis, OR 97330, USA XX DR MD5; 0c072ddc8f4ecf05271cb8c7455a7675. XX CC GenBank Accession Numbers HQ012653-HQ012662 represent the complete CC genome of Raspberry latent virus isolate RpLV9A. XX FH Key Location/Qualifiers FH FT source 1..3650 FT /organism="Raspberry latent virus" FT /segment="S4" FT /host="raspberry" FT /isolate="RpLV9A" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="20-Oct-2007" FT /identified_by="Diego Quito, Robert Martin, Wilhelm FT Jelkmann" FT /db_xref="taxon:907191" FT CDS 22..3585 FT /codon_start=1 FT /product="structural protein P4" FT /db_xref="UniProtKB/TrEMBL:E3VL85" FT /protein_id="ADO27690.1" FT /translation="MEYNAPKFLIDQRLLKDPHPNQVSQLLKNPIQYDYSYHEITNQHS FT LRLRGIWGGYYPTTLDLRSNLFETLRSENSEIPRERMIQMLRELQLSIKLPLPKIKDAS FT FSSMKYCYLLGWIARAFEYHGPVWGRIGSDPTIVCYRTASNVHPLQRFMELCDREASSV FT QLYGCRAYYLPGEQSPDLAQYQSINQVMADRYVAWMHPEDWRRNFSYLHVPPTALCAIH FT HTWMYDLPHMTFFSNRIKMVEYLLVKVSENHKCFRKFNDGQGEEIDRVSEAVGTFRKND FT TPFLILHLLQNDQLLADSFLQNYPKITADEFLQMWPQFGIDTSKRKIEPHFIQITSTMK FT RCIAQSRRAHWCYESLLNDEEVIPILDGIPTVGGAVVSDDLVIWSDIPLGPPLQLLSGR FT TFSAHEPLSSLLYTMSTVPSQSGQIHLQVGRGICELPTLANRQRSENEIASARNTFLTP FT LPDVIWQLLQTGRINPMMFHAVKKMRQQFTNGGFGRVEVYSTLHLLQNLLFDDPDLTFG FT EVIPKPSVKAKPTRLNQNSLKLMSVFAYICRSILDLNQDHFDLTQQDKIPIVSKIVIAG FT AVDDPFASCLRKTYPNINVIGFGTDAVSPNLRMSVEGASSRNMSCNILISEIGQENKGT FT FEQMIEGVCEHVVAFVSWASLGAIRLSYPSTFLFNSIRERLDAMDQNVHVFPFQVTYQD FT LFTPDCYLMFHRTNRFRNGTTAKYFDNSINMFEKKHSNLYKPSNDYVLCKPVRMSTVFT FT KRQLDLDTVPNCGYFALTTPWGNAAEVVNLLLESCEQVSTWKGERSGTLVNVVGRISKF FT RMALTQRNSADLGLTDGARMLSYNSFGVSNRRMEFSSLLSIPWYTIVAEASRLMMVDII FT EKVLPNVITQYCAIGSRNLTECYAVRKYPLRCFDEYYANGPQIQEAYGIEYLQRAYRYG FT EEALLAGEAVMANFSLMSSLQPDVTTQDAEADDQYNKILGMINSIKTRNDPTACFIASV FT YVNGLRNELDYGSDNLPLGMTFTAPNKLTFGGYVPVSTIDMDALVDTLREDCEFVRYAM FT VSLDWILKACNTHGWVPSASGSSAIATVERVVMILIISSDFPNTPEAKRRNLVMPLPGS FT ERFARAVDPPPPADQLLYRAVNVPAPPEIIQPVINTTIRNPENPNPESSSSNERPKRSL FT GLAFHPSVQLRNEHELRSSEV" XX SQ Sequence 3650 BP; 1068 A; 720 C; 801 G; 1061 T; 0 other; agtttattct tttcaacaac catggagtac aatgcaccta agtttttaat tgatcagagg 60 cttttaaaag atccacatcc taaccaagta tcccagctgc taaagaaccc tattcaatat 120 gattattctt atcacgagat aaccaaccag cactcgctac gcctgcgcgg aatatgggga 180 gggtattatc caacaactct cgatttaaga agtaatctgt ttgaaacgct acgatcagaa 240 aattctgaga taccaaggga acggatgatc cagatgttgc gggaattaca gctgtcaatc 300 aagttgccgt tgccaaaaat taaagatgct tctttctcat caatgaaata ttgttattta 360 ctaggatgga tagcacgcgc atttgaatat cacggacctg tatggggaag aatcggatct 420 gatccaacca tagtttgcta tcgaactgca tctaacgttc atccacttca acggtttatg 480 gaattatgtg atcgcgaagc ttctagtgta cagttgtatg gatgtagagc gtactatctg 540 ccgggagaac agtcacctga cttagctcag tatcaatcga taaaccaagt gatggctgac 600 aggtacgtgg catggatgca ccctgaagat tggcggcgta acttttcgta tctacacgta 660 ccacctacgg ctttatgcgc tatccaccat acttggatgt acgacttacc tcatatgact 720 ttcttttcga acaggattaa gatggtagaa tatttgttgg tcaaagtttc tgaaaatcac 780 aagtgttttc gaaaattcaa tgatggacaa ggtgaggaga tagatagagt gagcgaagcc 840 gtgggaactt ttaggaagaa tgacacgccc tttcttattt tacatttgct acagaatgac 900 cagctactgg ctgattcttt tcttcagaat tacccaaaga ttactgccga tgaatttcta 960 cagatgtggc ctcaattcgg aattgacacc tcaaagagaa agatcgagcc gcatttcatc 1020 caaataacct caacaatgaa acgttgcatc gctcaatcaa ggagagccca ttggtgttat 1080 gaatcattgc taaatgatga agaagttata ccaattttgg atggaatacc gactgttgga 1140 ggagccgtgg tgagtgacga tctagtaata tggtcagaca tacctcttgg accacctttg 1200 caactattat ctgggagaac cttttctgcg catgagccat taagttcact tctatatacc 1260 atgtcaacag ttccaagtca aagcggacag atccacctgc aagtcgggag aggaatatgt 1320 gagttaccaa cattggcaaa tcggcagaga agcgagaatg agatcgcgag cgccagaaat 1380 actttcttaa cccccttacc tgacgtaata tggcaactgc ttcaaacagg aagaattaac 1440 ccaatgatgt ttcacgctgt aaagaaaatg cgtcagcagt ttacaaatgg tggattcggg 1500 agagttgagg tctattctac gctacatcta ctccaaaatt tattgtttga tgatcctgat 1560 ctaacatttg gagaggtgat tccaaagccc agtgttaagg ctaagccaac gcgcttgaac 1620 cagaactctt taaaattgat gtctgttttt gcatatattt gcagatcaat tttggattta 1680 aatcaagacc atttcgatct tacccagcag gataagattc ccatcgtttc aaaaatagta 1740 attgctggag ccgttgatga tccttttgct tcatgcttgc ggaaaacata cccaaatatt 1800 aacgtgattg gatttggtac cgatgctgtc tctcctaatt taagaatgtc ggtggaagga 1860 gctagttctc gtaacatgtc atgtaatatt cttatttctg aaatcgggca ggagaataag 1920 ggtacttttg agcagatgat tgagggtgta tgtgagcatg tggtcgcctt tgtctcatgg 1980 gcctctttgg gagcaattcg tttgtcatac ccaagtactt tcttatttaa tagcatacga 2040 gagaggttag atgctatgga tcaaaatgtg catgtttttc cttttcaagt gacatatcaa 2100 gatctattca cccctgattg ctatcttatg ttccatagga cgaatagatt cagaaatggt 2160 actacagcaa agtattttga taacagcatt aatatgttcg agaagaaaca ctctaatttg 2220 tataagcctt ctaatgatta cgtgttgtgt aagcctgtga ggatgagtac agtatttact 2280 aagagacagt tagatctgga tacagttcca aattgtggat atttcgctct aaccactcct 2340 tgggggaacg ctgctgaagt cgtaaaccta ttgcttgagt cgtgcgaaca agtctcaaca 2400 tggaagggag aaaggtctgg aacgttagtc aacgtcgttg gaagaatctc aaagtttagg 2460 atggccctca ctcagaggaa ttctgctgat ctcggtttga ctgatggggc aaggatgcta 2520 tcatataatt cttttggagt ttcgaatcgg aggatggaat tttcaagttt attgtcgatt 2580 ccttggtata caattgtagc tgaagcttca cgcttgatga tggttgatat tattgagaaa 2640 gtccttccta acgtgattac tcagtattgt gctattggat ctagaaattt aacggagtgc 2700 tatgcagtaa ggaagtatcc attacgatgt ttcgatgaat actacgctaa tggaccccag 2760 attcaagagg cttatggtat cgaatatttg cagcgagctt atagatatgg ggaggaagca 2820 ctgctagcgg gagaggcagt tatggcaaat ttcagtctga tgtcttcact ccagcccgat 2880 gttacaactc aagatgctga ggccgatgat caatataaca aaattcttgg catgattaac 2940 tctattaaaa cgcgtaatga tccaacagca tgttttatcg cttcagtgta tgtcaatggc 3000 ttgcgaaatg agctggacta tggttccgac aacctaccac taggcatgac tttcaccgca 3060 ccaaataagc ttaccttcgg aggatacgtt cctgtatcaa caatagacat ggacgcttta 3120 gtcgatacct taagagaaga ttgtgaattt gtaagatatg cgatggtctc acttgattgg 3180 atattgaaag cgtgcaacac tcatgggtgg gttccatctg cttccggaag ctctgcaata 3240 gcaactgttg aaagagttgt gatgattcta ataatctcat ctgactttcc aaatactcca 3300 gaagcaaaga gacgtaactt agtgatgcct ttacctggtt ctgagagatt tgctagagcc 3360 gtcgatccac cgccgccagc cgaccagtta ttgtatagag ccgtgaatgt tccagctcct 3420 cctgaaatta ttcagcctgt gataaatact acaatccgta acccagaaaa tcccaatcct 3480 gagagctcat catcaaatga aaggccaaag agatctttag gtttagcatt tcatccttcc 3540 gtccagttgc gcaatgaaca cgagctgaga tcatctgaag tttaggttaa gctactgtgc 3600 aacgttgttg ttggcgtgcg gcccacacgc agtgaaagaa tagcgaatac 3650 //