ID HQ012655; SV 1; linear; genomic RNA; STD; VRL; 3818 BP. XX AC HQ012655; XX DT 18-OCT-2010 (Rel. 106, Created) DT 16-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Raspberry latent virus segment S3, complete sequence. XX KW . XX OS Raspberry latent virus OC Viruses; Riboviria; Reoviridae; unclassified Reoviridae. XX RN [1] RP 1-3818 RX DOI; 10.1016/j.virusres.2010.11.008. RX PUBMED; 21144872. RA Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.; RT "Complete sequence and genetic characterization of Raspberry latent virus, RT a novel member of the family Reoviridae"; RL Virus Res. 155(2):397-405(2011). XX RN [2] RP 1-3818 RA Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.; RT ; RL Submitted (03-AUG-2010) to the INSDC. RL Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av, RL Corvallis, OR 97330, USA XX DR MD5; 3172f214e4e514a5a2498cec4760dbc6. XX CC GenBank Accession Numbers HQ012653-HQ012662 represent the complete CC genome of Raspberry latent virus isolate RpLV9A. XX FH Key Location/Qualifiers FH FT source 1..3818 FT /organism="Raspberry latent virus" FT /segment="S3" FT /host="raspberry" FT /isolate="RpLV9A" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="20-Oct-2007" FT /identified_by="Diego Quito, Robert Martin, Wilhelm FT Jelkmann" FT /db_xref="taxon:907191" FT CDS 45..3761 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P3a" FT /db_xref="GOA:E3VL83" FT /db_xref="UniProtKB/TrEMBL:E3VL83" FT /protein_id="ADO27688.1" FT /translation="MFPTIVDILTNLTYKPELHHDYLSELKIIDDPQKIYDYLRLGEPL FT RTGELITGIATGGFEFSFRFTLPTEITNPPPFDVDTYKAAVTSDGFSDPTQPNYLVTCD FT IRSIFDQLDKFTKKEEIPVGLQVVRHMITRSVYQSRISSIWRQLLSVKLACEARAGARE FT SKDPISRCIATLLERHLHPPFWESKKEVHWLKIKTLSILPLLLHAVANLGTQLLVDNLT FT EMEVLLCFQIYLQMARRQYQDTKLSMQKKIRSWLREGLQSLGVVKVPRWSPGGMLAETR FT MYMTREYPSTQEAMDKARKTREEILLPLINQYIRECLLRVRDVQLMLNSWIVTRIMSND FT GTYFASQPALTLDKAVKPKLCSTITPALRPVIMLGDSITLEADPIPNSPFARAISFTDR FT YVETTVQRLQGTNWEESFIQFLTSSSSGRDFQPEILISYSQVVQKVIRSRVFAAGIESE FT TYYSLEDLEHLARQPSKLVGRDQISRRQRAVAGVNNGGTLLGFPALRILEAMLKQTKHA FT SSGKQTGTFLDLLKPLSCFSSDYFCFNSSDVEGMDASVQANVQQMMWNFVLRVASKLPR FT TKYFAYNYGETQVTKYEYAPNGVVPINVFHMLKQVTGLELACARASTSLQPQNCQIKDD FT ILGIISTREPTFPSGLPFTGAHHSFTLISAAQADKWMEERAGGYSSTQIFHEVQGDDEL FT FIYHGLEKQVEGDIVKDMNATRRWGFSVDPETSKNTCEFLQQRVALGRFIGYPDRVSLF FT TAERPREGKSIKEKMSEIVGLGTDLGPRSRNPQGLVRLYYAIGICCTSRITFKVSTENA FT KKMVASSFGKDCGANLYERTVVGDKPSPFEYVRMYYPICALWHEDGGGLAPLRCFRKDG FT SCTVFPSYYFMRGDLNRRWLWDISNNLAQWKEHAEICKVDNIHGVSPGRYLDCALIERF FT LWPQANHLVITSKAQIVEDFRTSDLFTMDSINRLARKVDSMRDSKKIDSSILAQAKLAE FT KGFDIPDGIVTGHQIRSRMLDSVQKAELTESEDVQIGDMYVDKLLRFKPRIQIKKTDVC FT MLYYLTENKDDPIPTSEFHRVIDQVSLSLEVTPYSDAATLLKYCGIRASHYTKLSVFGE FT GIQGRYGKGRMNQKIFDIGYNIARKNASMLPTFYNAVGIPQRQRPEFEEALRMYQEYQC FT LQFKVIRTPRQFFFCDDSGERLLNSCNIIHHQSSNPAVLALGKTILIAELAARASSLCG FT KRVTLTMVGSKLS" FT CDS 506..1468 FT /codon_start=1 FT /product="protein P3b" FT /db_xref="UniProtKB/TrEMBL:E3VL84" FT /protein_id="ADO27689.1" FT /translation="MRSTSRGARVEGPNFEMYSNATRKASAPTLLGIEEGSSLVKNQDV FT VNSSITTTRSGESWNPIVGRQSYRDGSTIVFSDIPTNGSSAISGYQAVNAEKDKVMVKR FT GTSESRSSQGAEMVSRRYASRDANVYDERIPFYPGSNGQSSEDEGRDSTPTYQPIYPRV FT FVTGEGRAVNAEFMDRDQDNVQRRDVFRFSASADARQSSQTEVMFNDYTGVKTSDHAWR FT FHNIRGRPHPELSIRASNLLYRSLCRNDSAAFTGNELGREFHPISDVVELGEGFSTGDS FT DIIFPSCPESNKISGICCWNRIGDLLFPRRSGTSCETAV" XX SQ Sequence 3818 BP; 1151 A; 745 C; 882 G; 1040 T; 0 other; agttttaatc catatatctt agtttgacac ccaagcagca atccatgttt cctactatcg 60 ttgacatcct gaccaactta acatataaac cagaactcca tcacgattat ctgtcggaac 120 ttaaaatcat cgacgaccct cagaagattt acgactactt acgcctaggg gaaccgcttc 180 gaacaggtga attgataacg ggcatagcaa caggcggatt tgagttttcc tttagattca 240 ctctaccaac tgagatcacc aaccctcctc ctttcgacgt tgatacatac aaagcagcag 300 tgacatcaga cggtttctct gaccctactc aaccaaatta tttagtgaca tgcgatatcc 360 ggtctatatt cgaccagtta gataaattta ctaagaagga ggagattcct gttggattac 420 aagtagtacg tcatatgatt accagatctg tatatcagtc tcgaatttct agtatctggc 480 gacagctttt aagtgtgaaa ttagcatgcg aagcacgagc aggggcgcga gagtcgaagg 540 acccaatttc gagatgtata gcaacgctac tagaaaggca tctgcaccca cccttttggg 600 aatcgaagaa ggaagttcat tggttaaaaa tcaagacgtt gtcaattctt ccattactac 660 tacacgcagt ggcgaatctt ggaacccaat tgttggtaga caatcttaca gagatggaag 720 tactattgtg ttttcagata tacctacaaa tggctcgtcg gcaatatcag gataccaagc 780 tgtcaatgca gaaaaagata aggtcatggt taagagaggg acttcagagt ctaggagtag 840 tcaaggtgcc gagatggtct ccaggaggta tgctagcaga gacgcgaatg tatatgacga 900 gagaataccc ttctacccag gaagcaatgg acaaagctcg gaagacgagg gaagagattc 960 tactcccact tatcaaccaa tatatccgag agtgtttgtt acgggtgagg gacgtgcagt 1020 taatgctgaa ttcatggatc gtgaccagga taatgtccaa cgacgggacg tatttcgctt 1080 ctcagccagc gctgacgcta gacaaagcag tcaaaccgaa gttatgttca acgattacac 1140 cggcgttaag accagtgatc atgcttggag attccataac attagaggca gaccccatcc 1200 cgaactctcc attcgcgcga gcaatctcct ttaccgatcg ctatgtagaa acgacagtgc 1260 agcgtttaca gggaacgaat tgggaagaga gtttcatcca atttctgacg tcgtcgagct 1320 cggggaggga ttttcaaccg gagattctga tatcatattc ccaagttgtc cagaaagtaa 1380 taagatctcg ggtatttgct gctggaatag aatcggagac ttattattcc ctagaagatc 1440 tggaacatct tgcgagacag ccgtctaagt tagttgggag agatcaaata agcagacgtc 1500 aaagggctgt agcaggagtt aataatggtg gcactctgtt aggttttcca gctcttagaa 1560 ttttagaagc aatgttaaaa cagacaaaac acgcgtcttc gggcaagcag actggcacat 1620 ttttggattt gttgaaacct ctgagttgtt ttagctctga ttacttttgt tttaattcat 1680 cggacgttga aggaatggat gcaagtgtac aagctaacgt gcagcagatg atgtggaatt 1740 ttgtattaag agtggcttca aaacttccga ggacaaaata tttcgcttat aattacggag 1800 agacccaagt tactaaatat gagtatgctc ccaacggtgt agtaccgatc aacgtgtttc 1860 acatgttaaa gcaagtcacg ggattagaat tagcgtgcgc acgagcatca acttctctcc 1920 agcctcagaa ctgtcagatt aaagatgaca tcttaggtat aataagcact agagaaccga 1980 cttttccttc tggcttacca tttactgggg ctcatcacag tttcactctg atatctgcag 2040 ctcaagccga taagtggatg gaagaacgag cagggggata ttcgagcacg cagatatttc 2100 atgaagttca aggagacgac gaattattca tctatcatgg gctagagaaa caagtggagg 2160 gagatattgt gaaggacatg aatgctacta gaagatgggg attttctgtt gatccagaaa 2220 cgtcaaagaa tacttgtgaa tttctacagc aaagagtggc attgggaaga ttcattggat 2280 accctgatcg agtgagttta tttactgcag aacgtcctcg tgaaggtaag tccataaaag 2340 aaaagatgag tgaaattgtt gggctgggta ctgatcttgg accaagaagt agaaatccac 2400 aaggtttagt ccgattatat tacgcgatag gaatatgctg tacctccaga attaccttca 2460 aagtctcaac ggagaatgca aagaagatgg tggcatcatc attcgggaaa gattgtggcg 2520 cgaaccttta cgagcgaaca gtagttggag acaagcctag tccttttgaa tacgttagaa 2580 tgtactaccc tatatgcgct ttatggcacg aagatggcgg gggattagca ccactacgat 2640 gttttcggaa agatggatct tgcactgttt tcccttccta ctattttatg cgtggtgact 2700 taaatcgtcg atggttatgg gacatttcaa ataatctcgc tcagtggaaa gaacatgcgg 2760 agatttgtaa ggtcgataac attcacggag tgagccctgg acgatacttg gattgtgctt 2820 taatcgagag atttctatgg cctcaggcta atcatttagt aatcacgtca aaagcgcaga 2880 ttgttgagga ttttcggaca tctgatttat tcactatgga ttctatcaat agattagcca 2940 ggaaagttga tagtatgcgt gactctaaga agattgattc atccatttta gcccaagcaa 3000 agctagcaga gaaaggtttt gacattccag acgggatagt tactggtcat caaattcgct 3060 ctagaatgct ggactctgtt caaaaagctg agctgactga aagtgaggat gttcaaatag 3120 gagacatgta tgtcgacaaa ttattgagat ttaagcctcg gattcaaatt aagaagacag 3180 atgtgtgcat gttgtattat ctaactgaaa ataaagatga tcctattccc acttctgaat 3240 ttcatcgagt tatcgaccaa gttagtctat ctttagaagt gacaccctac agcgacgccg 3300 cgactctcct aaaatattgc ggaattagag catctcatta cactaaattg agtgtctttg 3360 gtgagggaat ccaaggtaga tatgggaaag ggcgaatgaa tcaaaagatc tttgatatcg 3420 gatacaatat tgcgaggaaa aatgcaagca tgcttccgac tttctacaac gctgttggaa 3480 ttccccaaag acaaagacct gaatttgaag aagctttgcg catgtaccaa gagtatcagt 3540 gtttacagtt taaggttatc agaactcctc gacaattctt cttttgtgat gattccggtg 3600 agcgactcct aaattcttgt aatattattc accaccagtc ttctaaccca gctgtacttg 3660 ctttgggcaa aaccattctg atagccgaat tagcagctag agcgtcatct ttgtgcggca 3720 aacgagtaac gttaaccatg gtggggtcta aattgtcttg atttgtggtc gatgactaag 3780 agcccttggc gctgagggat taaggattaa gcgaatac 3818 //