ID HQ012654; SV 1; linear; genomic RNA; STD; VRL; 3914 BP. XX AC HQ012654; XX DT 18-OCT-2010 (Rel. 106, Created) DT 16-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Raspberry latent virus segment S2, complete sequence. XX KW . XX OS Raspberry latent virus OC Viruses; Riboviria; Reoviridae; unclassified Reoviridae. XX RN [1] RP 1-3914 RX DOI; 10.1016/j.virusres.2010.11.008. RX PUBMED; 21144872. RA Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.; RT "Complete sequence and genetic characterization of Raspberry latent virus, RT a novel member of the family Reoviridae"; RL Virus Res. 155(2):397-405(2011). XX RN [2] RP 1-3914 RA Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.; RT ; RL Submitted (03-AUG-2010) to the INSDC. RL Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av, RL Corvallis, OR 97330, USA XX DR MD5; 1f9f72b36ef5aa80333b89aa0961dffa. XX CC GenBank Accession Numbers HQ012653-HQ012662 represent the complete CC genome of Raspberry latent virus isolate RpLV9A. XX FH Key Location/Qualifiers FH FT source 1..3914 FT /organism="Raspberry latent virus" FT /segment="S2" FT /host="raspberry" FT /isolate="RpLV9A" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="20-Oct-2007" FT /identified_by="Diego Quito, Robert Martin, Wilhelm FT Jelkmann" FT /db_xref="taxon:907191" FT CDS 65..3820 FT /codon_start=1 FT /product="structural protein P2" FT /db_xref="UniProtKB/TrEMBL:E3VL82" FT /protein_id="ADO27687.1" FT /translation="MAANRKSTVQQHALLMKEEEEKRKRFTQANPPTLTPLLQEFQKPK FT TGEATSSEKPKVEEPKPEAIPKSVTSETLKIIPQAKTSVPDLDTLLKDPNLVKELLAKI FT TALKPTEVHVPTLKAESNEGVVKVETTAEVDKIVTAEKVSAEAMNIRKASAAIGVGTNS FT RTPFQTTFVTIPPRSQDVGSTTKVANWRSQKIKLTTSEPTVREIIPAFLQVPVTLEDEI FT LTLKKREEYGDHSTIEDVSQLRSGSDEVFNKNVAYVICEVNPAFVAGSGVTMECGVPMA FT KSVFKSLTSVLATPVTSADKFSIVSGALAWALNFARKTEVVLQYGKISGEKSNVTTFHT FT NFLPTNLLSTVLARKIMLPLYPSIVLSTISRRLPYMPHVAREILDETPYRIGEVRAIRR FT SVRLAKDVVVTQALNIDTPTAMALNRTARVFLDEDFTQDMAQPALSAYSMSDVQTTVLG FT SWDELKFGRLLSEDFELSGLLIAAAGSKSLFESILTVNEQAFLQLGTVSPELSTPTLDS FT IPPNRLDTVLVDLVKTRLAQSSFEDAVQTLMLQVTPQLVFPSVIPEIFNIKHVKLIVSL FT FEILMMFVFTPGVAKLAGAGLARTLKSIISLLWNTEFQNFIQACGWVNNEAGTINDPTD FT IEYWANQHIPTIYLPHIVIPHNCPAIRSIHALLRPLVHPSPHTKAHLARFPRMRGEMTT FT FLPYPLMQVATAETSQFKLRINAIVEQCKTWVETTNVNADKGFKSKATYLFDAINGAMI FT SHGLGMSREVGVPLRWMVNRKTFFVDFYDGQLGTPFPPQMVLVAHDRVTYPQKIPVEIR FT AYRELVIRPQMVWSIIFHMRFKGAHYEPLLEDSHQCSFNAPNPGDHLSDDNAIVEASTR FT LLEPFYLTNMIISDNINVAGVEIMRDLIGRDRLAASDYNSVRSFVGEILKGTTFGTEYV FT RFNDINAIQASWKVPDTQVRYTNALGQVVEPQEGDPNIMLQGLTMIREDFLDRFNIGME FT CILSPRSAYSRLNKGLIIHRTLVSLDSPYLEDPPGFANIEEGYDRVAHTVHIREPHGIS FT SYYQDNGQHYQEPRDYPHRTFILRDLTTLFPEDIVILVEGIFAGRFRVELPDLYYIYEI FT KHCSRSSPMYQPDDVQKLLTLSDGEIPRIIFYDTELPIYIYHSQLVQSRRSPRFLFPMQ FT SITRHVIARGLFCEDNVPDERYWREPPPHLCDTGEVTNAGILTYHNGTPKRLNSICFSN FT QVIVMSKEADFTGEVYFNEKLVRYLE" XX SQ Sequence 3914 BP; 1124 A; 835 C; 884 G; 1071 T; 0 other; agttttttac gttgtagtca ccaaccacat cagccaaatc ataaaccgat cattcatagt 60 caccatggca gccaaccgca aatcaacagt ccaacaacac gcattactaa tgaaagaaga 120 ggaagagaag cgaaaacgtt ttacccaagc aaatcctccc acccttacac ctttattgca 180 agaattccag aaaccgaaga caggagaggc cacatccagc gagaaaccaa aagttgagga 240 accaaagcca gaagcgattc ctaagtcagt gacatcagaa actctcaaaa tcataccgca 300 agcgaaaacc agtgtgcctg atctggacac tttgcttaaa gatcctaatt tagtgaaaga 360 gcttctcgcg aagatcacag ctttaaagcc aactgaggtg catgtgccaa cattgaaagc 420 ggagtctaat gaaggagtgg tgaaggtgga gactactgcc gaagttgata agatagtgac 480 agccgagaag gtaagcgccg aagccatgaa tatcaggaaa gcctctgcag caataggtgt 540 tggtacgaat tctcgaacgc cgtttcaaac cactttcgta acaataccac cccgctctca 600 ggatgtcgga tcaaccacca aagttgcaaa ttggagatcc caaaagatca agctaactac 660 gagcgagcca acggtgcgag agattattcc tgctttttta caagttccag tcactctgga 720 ggatgagatt ctaacactca agaagcgcga ggaatacggt gatcattcaa cgatcgaaga 780 tgtctcccag ttaagatctg gttccgacga ggtatttaac aaaaatgtag cttatgtgat 840 atgtgaagtt aacccagcgt ttgtagccgg atcaggagtg actatggagt gtggtgtacc 900 aatggctaaa tctgttttta aaagtttaac atccgttctg gcgacacctg tgactagtgc 960 tgataaattt tcaatcgtat caggagcgtt agcctgggcc ctaaactttg cgaggaagac 1020 tgaggtagtt ttgcaatatg gaaagatttc aggagagaag agtaatgtca cgactttcca 1080 taccaatttc ctacctacta atctgctcag cacggtgttg gcaaggaaaa tcatgctgcc 1140 cttgtaccct tcaatcgtcc tgtcaacaat aagtcgcaga cttccttaca tgccgcacgt 1200 tgctcgcgaa attctagacg aaactccata caggataggt gaagtcaggg cgattagaag 1260 atcagttcga ttggcaaaag atgttgtggt gacccaagct ctaaacattg atacaccaac 1320 ggcgatggct ctgaatcgta cggcacgagt ttttctagat gaagacttta ctcaggacat 1380 ggctcaacct gctttatcgg cttactcgat gagtgacgtt caaacaactg ttttaggttc 1440 gtgggatgaa ttaaagtttg gaagattact ttctgaagac ttcgagttat cagggctttt 1500 gattgccgcc gctggatcta aatctttgtt tgagagtatt ttgaccgtga atgaacaagc 1560 tttccttcag ttaggcactg tttctccgga gctgtctacc cctactcttg actctatccc 1620 tcctaataga ttagatacgg tgttggtaga cttagttaaa acgaggttgg cccaatcaag 1680 tttcgaagat gcagttcaga ctttaatgct tcaagttact cctcaattag tgtttcctag 1740 tgtcatccct gaaatcttca acatcaagca tgttaaactg attgtgtccc tttttgaaat 1800 actgatgatg ttcgtcttta ctcctggtgt tgcgaagttg gcaggtgctg gactggctag 1860 aactctaaaa tcgatcatca gtcttctttg gaacactgag tttcagaact ttatacaagc 1920 atgtggttgg gtgaataatg aagctggaac aatcaacgat cctactgaca ttgaatattg 1980 ggcgaatcaa cacatcccca cgatttatct tccccatatt gtcatccctc ataattgtcc 2040 agcgatccga tcgattcacg ctctgttacg ccctttggtc catccatctc cacataccaa 2100 agcccatttg gctaggtttc cgaggatgag aggtgaaatg acgacatttc tgccataccc 2160 tttgatgcaa gtagcgaccg cagaaacatc ccagtttaaa ctgagaatca acgcaatcgt 2220 tgagcagtgt aagacgtggg tcgagaccac caatgtgaac gctgataagg gatttaaatc 2280 gaaagctact tatttgtttg atgctatcaa tggagccatg atttctcacg gactaggaat 2340 gagtagagag gttggtgtac ctttgcgctg gatggttaac aggaagacat tcttcgtcga 2400 tttctatgat ggtcagctgg gaactccttt tcctccacaa atggtcttgg tagcacatga 2460 tagggtaacg taccctcaga agatacccgt ggagatccga gcgtatagag agctagttat 2520 cagaccccag atggtttggt ctattatttt ccatatgaga tttaaaggag cgcattatga 2580 gccgctactc gaagattcac accaatgctc ttttaatgct ccaaacccgg gagatcatct 2640 atcagatgac aatgccattg tcgaagctag tacacgtctt ctggaaccct tttatttaac 2700 caacatgatc atctctgata atattaatgt agctggagtg gaaattatgc gggatttgat 2760 cgggagagat agattggcag cgtccgatta taattctgtg agatcatttg ttggggagat 2820 ccttaaaggc acaacattcg ggacggagta cgtgcgattt aacgatatca atgctattca 2880 ggcttcgtgg aaagtgcccg atacacaagt gaggtatacc aatgctttag gtcaggtagt 2940 cgagccacaa gagggagatc ctaatataat gcttcaaggt ctcacaatga tccgagaaga 3000 ctttttagac cgattcaaca ttgggatgga gtgcatcttg tcgcctagaa gcgcgtatag 3060 tagattgaat aaagggttga tcattcatag aacactagtt tcactagatt ctccttactt 3120 ggaagatcct ccaggatttg caaatataga agaaggatat gacagagtag ctcataccgt 3180 acacattcga gagcctcatg gcattagttc ttactaccag gataatggtc aacactacca 3240 agagccccgt gattatcctc atcgaacttt catccttcga gacttaacca cgctattccc 3300 tgaggacata gtgattttag tggaaggaat ctttgccgga agatttagag tggagctccc 3360 tgatctgtac tatatttatg agattaaaca ttgtagcagg tctagtccaa tgtatcaacc 3420 cgatgatgta caaaagttgt tgactttatc cgatggtgag atcccgcgaa tcatctttta 3480 tgatacggag ttaccaattt acatttacca ttcccaattg gtccaatctc gtcggtcgcc 3540 tagatttctg tttcctatgc aatcgattac caggcacgtg atcgctcgag ggctgttttg 3600 tgaagataac gttccagatg agcggtactg gagagaacca ccaccacact tatgcgacac 3660 tggagaggta acgaatgctg gaattttgac gtatcacaat ggtaccccaa agcgcttgaa 3720 ctcaatatgc ttctctaatc aggtgatcgt catgtctaag gaggccgatt ttacaggtga 3780 agtatacttt aatgagaagt tggtccgata cctagaatga acaggttgtt tcatgttgcg 3840 ttgggtcagt aggtctggtt tggatacccg gtgtcggttg gtgcctattg ggctataggc 3900 gtaaaagcga atac 3914 //