ID HQ012653; SV 1; linear; genomic RNA; STD; VRL; 3948 BP. XX AC HQ012653; XX DT 18-OCT-2010 (Rel. 106, Created) DT 16-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Raspberry latent virus segment S1, complete sequence. XX KW . XX OS Raspberry latent virus OC Viruses; Riboviria; Reoviridae; unclassified Reoviridae. XX RN [1] RP 1-3948 RX DOI; 10.1016/j.virusres.2010.11.008. RX PUBMED; 21144872. RA Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.; RT "Complete sequence and genetic characterization of Raspberry latent virus, RT a novel member of the family Reoviridae"; RL Virus Res. 155(2):397-405(2011). XX RN [2] RP 1-3948 RA Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.; RT ; RL Submitted (03-AUG-2010) to the INSDC. RL Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av, RL Corvallis, OR 97330, USA XX DR MD5; e28ca9efd6efbdcc51a60224c602f04c. XX CC GenBank Accession Numbers HQ012653-HQ012662 represent the complete CC genome of Raspberry latent virus isolate RpLV9A. XX FH Key Location/Qualifiers FH FT source 1..3948 FT /organism="Raspberry latent virus" FT /segment="S1" FT /host="raspberry" FT /isolate="RpLV9A" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="20-Oct-2007" FT /identified_by="Diego Quito, Robert Martin, Wilhelm FT Jelkmann" FT /db_xref="taxon:907191" FT CDS 30..3860 FT /codon_start=1 FT /product="structural protein P1" FT /db_xref="InterPro:IPR008580" FT /db_xref="UniProtKB/TrEMBL:E3VL81" FT /protein_id="ADO27686.1" FT /translation="MTENHEDLLRTILANQPNYSKQIAKLTELIISQSKMLSHIQRDLY FT GIHQGDCSTADHIARNMNLIFNHQRASEALARYIGSIPHSPQVGLYSYQSLKQYNHTLT FT DSTISSFCPSLKCFQIYLGEKFTGRIEESFESRIPMRGTDRILFSEAYNIPRRQYFPIR FT NEAFTATISVKSSFLHASKVMQYDVQISALGDIYFSQTFRIPKYKIGALEYYLSSCRGN FT DGYVLNARASGDQIFDVVTPNQVQVYSEMCVIYHEVDLRFAEKVSAQSAEMRRVIVADT FT ISVSDLGGIAFDPSHRVMNPDGTTSSDDEGLKWLVNYSMVEENSNINLKNVSDTFGMRF FT CSQLETAVRQRILASLFTMSVDSLLDFSPSGGEVDLDSQSFLPESGSINLLSEAIVANT FT RSITQILSSAIMYSEVDEDMKDLPFVSRAIPCLLPRKVNFHDSWLPGPTSTNSFNAWLY FT LKDVGTTPNFRSKSDKPTFIMNCDIINECYIRRPSMVLRVHEDSDMIVEMHYVIKYLDS FT SPSPSITKATIMPSAIVHRDPGLAMDVESLRVWGNTYAPSQGGRHELFSVASSTPNLQI FT TVSEDQGICVEEIKCFVLFKNALNKIGLVEEKENLVSCESYGAGICGTSFFKAWNSTEY FT TTSDGRQYYGIFAIDEKLEANNIYGDFLLRLGPWKYHDKGLVGESSILRTSSWYRRDGE FT FEFDYGGMPTYDGVKGKIKVTLTTADGETGWNEWPYTGEYSFNLTSNLSDPTATSMFYS FT APDVEKRYSKVSGEVKRLAQKVSKAVVFSNESGSRCPWLDTITARVLSLRLSLKVPITK FT ATSGDLISCDQRFNDVEATIAGTRAIAEEALSISERNEQRINEIDSALKAMEDQANFEA FT GIQMFAFAAELSMPVMGKVLTIMAEQTAKLSSVSARVIGKGLKGSSVATPLINLNARSK FT GVEKAFNSIGKASVETRVMFKSIKKAPPKIDRPGIDLFQTDKNFVLYDPLEFQKFNVFT FT AQKKSILGDGIIEGAGSNHKVAMKSDVTSSVLTVYHRPLQFLPKKISTAVHDLSVHGLS FT SVDLTARERWLRKTLHPTHSYVTISYDYPVVKTNKTRHVITYTGIGDSNPGGLRTGDKA FT AGVGTYSLEYDIIGLSKADGYRMMELRSHVDCGYTDEQCRNIYSTMFQRDVPSHMSLQE FT AWEEIGAHSRRRTVVDTEVASTPVSLDREWRLRSMLEQKDWEYNLLFKNCQDYAHGLYY FT YAQGGPVPKWISEKAQIQSYLDVSHRLDELSTWEATRDVVQYVDHGPLVSF" XX SQ Sequence 3948 BP; 1174 A; 765 C; 919 G; 1090 T; 0 other; agttttattc tcagtacaca ccagacaaga tgacagaaaa ccatgaagat ctactgcgga 60 ctatcttagc caaccaacct aattactcaa aacaaatagc caaactcaca gaattgatca 120 tctcacaatc aaaaatgcta tctcacattc agcgcgacct ttacggaata catcaaggag 180 attgtagcac agcggatcat atagcgcgta atatgaattt aatttttaac catcagagag 240 cgtccgaagc attagctcga tatattggaa gcatccctca cagtcctcag gtcggtttgt 300 actcttacca gtccttaaaa cagtacaatc atactttgac agattctact atttcttctt 360 tttgtccaag tctaaagtgc tttcagatct acttaggtga gaagttcacg ggaagaatcg 420 aagagtcctt tgagtcaagg atcccaatga gaggtaccga ccgaatattg ttctctgaag 480 cctacaacat tcctagaaga caatatttcc cgatccgaaa tgaagctttt actgcgacga 540 tatctgttaa atcatctttc ctacacgcat ccaaagtaat gcaatatgat gttcagatat 600 ctgctttagg agacatctac ttttctcaga cctttcggat tccaaagtat aaaattggag 660 ctttagaata ttatttatcg tcatgcagag gaaatgatgg atatgttttg aatgcaagag 720 cctctggaga tcagattttc gacgttgtca ctccaaacca agtgcaagta tattccgaga 780 tgtgtgtgat atatcatgag gttgatttac gattcgccga gaaggttagc gctcaatcag 840 ctgagatgag gagggtaata gtggcagata cgatttctgt tagcgatctt ggaggaatag 900 cttttgaccc atctcataga gtgatgaatc cggacggaac gactagttct gatgatgagg 960 gattgaaatg gctagtcaat tattccatgg tggaagagaa cagcaacata aatcttaaaa 1020 acgtgtcaga tacttttgga atgaggtttt gctctcagct ggaaaccgca gttcgacaaa 1080 ggattcttgc ttctctattc accatgtctg tcgattcact tttagacttt tcgccttccg 1140 gaggagaagt ggatttagat tctcagtcgt tcctgccaga atcagggagt attaatttat 1200 tatctgaagc tattgttgca aacaccagat ccatcacaca aatcttgagc tccgctatta 1260 tgtactccga ggtggatgag gatatgaagg atttaccatt tgtttcacga gctattccgt 1320 gtctgctacc taggaaagtg aactttcacg atagctggtt acccggtcct acttctacaa 1380 atagctttaa tgcatggctg tacctaaagg acgttggaac cactcctaat tttcgaagta 1440 agtctgataa gccaacgttc attatgaatt gcgatataat caacgaatgt tatataagaa 1500 gacctagcat ggtgttaaga gtgcatgaag atagtgatat gatagttgaa atgcattatg 1560 tcattaaata tcttgacagt tcacccagcc cctcgatcac caaagctact atcatgccgt 1620 ctgctatcgt tcaccgtgat cctgggttag caatggatgt cgagagtttg agagtttggg 1680 gaaacactta cgcaccgagt caaggaggaa gacatgagct cttttccgtc gcatcatcca 1740 cgcccaacct ccaaataact gtttctgagg atcaagggat atgtgttgaa gagattaaat 1800 gttttgtgtt gtttaagaat gctttaaata agataggatt ggttgaagag aaagagaatt 1860 tggtatcgtg tgagtcatac ggcgcgggta tatgcggcac atccttcttt aaggcttgga 1920 attccactga atacacaact tctgacgggc gtcaatatta tggaatattt gcaatcgatg 1980 agaaactgga agccaacaat atctatgggg atttcttact gcgtttaggt ccatggaaat 2040 atcatgataa ggggttagtt ggagaatcat cgattttaag aacttcttct tggtatagaa 2100 gggatggaga atttgagttc gactatggtg gaatgcccac ttatgacggt gtcaaaggaa 2160 agattaaggt aacgttgact acggcagatg gggagacggg gtggaacgag tggccataca 2220 ctggggagta ttcatttaat ttgacgtcaa atttgtctga tcccacagcc acttcaatgt 2280 tctacagcgc acctgatgtt gagaagcgat atagtaaagt ttctggtgag gtgaaacgct 2340 tggcccagaa agtgtccaaa gcagtggtgt tcagtaatga aagtggttcg agatgcccat 2400 ggctagatac aattactgcg cgagtattat cgcttcgatt gtccctaaaa gtacctatca 2460 caaaagccac atcgggcgat ttaatatctt gcgatcagcg tttcaacgac gtcgaagcca 2520 ccattgctgg aacaagagcg atagcagaag aggccctatc catttcggaa aggaatgagc 2580 agagaattaa cgagatcgat agtgcattga aagcaatgga ggatcaagct aatttcgaag 2640 ctgggattca gatgttcgcg tttgctgctg agttatcaat gccagtaatg ggtaaggtgc 2700 taacgataat ggctgaacag acagctaaat tatcaagtgt gagcgcgcga gtaatcggaa 2760 agggcctgaa aggatcatca gtagcgacgc ctctaattaa tttaaatgct cgttctaaag 2820 gggttgagaa ggctttcaat agcattggga aagcgtctgt tgagacgaga gtcatgttta 2880 agtcgattaa aaaggcgcca ccaaaaattg acagaccggg catcgatttg tttcagacgg 2940 ataaaaactt tgttttgtat gaccccctag agtttcagaa attcaatgta tttacagctc 3000 agaaaaagtc tattttaggg gatgggataa tcgagggtgc agggtccaat cacaaagtgg 3060 caatgaagag cgatgttacg agcagcgtcc taaccgtcta tcatcgtcca ttgcaatttt 3120 tacctaagaa aatatcgaca gcggtacatg atctatctgt tcatggattg agctctgttg 3180 accttactgc ccgagaaagg tggcttagaa aaacactgca tcctactcat tcctacgtta 3240 ccatctcgta cgattaccca gttgtcaaga cgaataagac gagacatgtg atcacataca 3300 caggaatcgg cgattctaat ccagggggtt tgagaactgg tgataaagcg gctggagtcg 3360 gaacctattc tttagagtat gatatcatcg ggttaagcaa agctgacggt tatagaatga 3420 tggagttgag atctcacgtc gattgcggat acactgatga acaatgccgt aacatttact 3480 ccacaatgtt tcaaagagac gttccatctc atatgtcgtt gcaggaagcg tgggaagaga 3540 taggcgcaca ctccagaaga cgaacggtcg ttgatacaga agtagcatcc acaccggtga 3600 gtttagatag agaatggcgc ctaagatcaa tgttggagca gaaagactgg gagtataatc 3660 tactttttaa gaattgtcaa gactacgctc acggtctcta ttactatgcc caaggtggac 3720 ctgttcctaa gtggatttct gaaaaggccc aaatccagtc atacctcgat gtatcgcata 3780 gattagatga gctctcgacc tgggaagcca cacgagatgt cgtgcagtac gttgaccatg 3840 gacctttggt gtcattttag aggtgcactt cctccctcta gtgggtgatt ccactatggt 3900 gcgttgtgat agggcagtgg gtaagtccct cagagaataa gcgaatac 3948 //